메뉴 건너뛰기




Volumn 180, Issue 1, 1999, Pages 77-83

Restriction site insertion-PCR (RSI-PCR) for rapid discrimination and typing of closely related microbial strains

Author keywords

3' End primer modification; Bacillus cereus group; Point mutation; Restriction analysis; Restriction site insertion PCR; Strain identification

Indexed keywords

DNA FRAGMENT; RIBOSOME DNA;

EID: 0032832394     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(99)00467-X     Document Type: Article
Times cited : (13)

References (19)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W. and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 2
    • 0027517868 scopus 로고
    • Bacillus cereus and related species
    • Drobniewski, F.A. (1993) Bacillus cereus and related species. Clin. Microbiol. Rev. 6, 324-338.
    • (1993) Clin. Microbiol. Rev. , vol.6 , pp. 324-338
    • Drobniewski, F.A.1
  • 3
    • 0025875752 scopus 로고
    • Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA
    • Ash, C., Farrow, J.A.E., Dorsch, M., Stackebrandt, E. and Collins, M.D. (1991) Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA. Int. J. Syst. Bacteriol. 41, 343-346.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 343-346
    • Ash, C.1    Farrow, J.A.E.2    Dorsch, M.3    Stackebrandt, E.4    Collins, M.D.5
  • 4
    • 0026891169 scopus 로고
    • Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing
    • Ash, C. and Collins, M.D. (1992) Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing. FEMS Microbiol. Lett. 94, 75-80.
    • (1992) FEMS Microbiol. Lett. , vol.94 , pp. 75-80
    • Ash, C.1    Collins, M.D.2
  • 5
    • 0028915478 scopus 로고
    • Comparative analysis of the 16S to 23S ribosomal intergenic spacer sequences of Bacillus thuringiensis strains and subspecies and of closely related species
    • Bourque, S.N., Valéro, J.R., Lavoie, M.C. and Levesque, R.C. (1995) Comparative analysis of the 16S to 23S ribosomal intergenic spacer sequences of Bacillus thuringiensis strains and subspecies and of closely related species. Appl. Environ. Microbiol. 61, 1623-1626.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1623-1626
    • Bourque, S.N.1    Valéro, J.R.2    Lavoie, M.C.3    Levesque, R.C.4
  • 6
    • 0029071647 scopus 로고
    • Genetic variability of Bacillus anthracis and related species
    • Harrell, L.J., Andersen, G.L. and Wilson, K.H. (1995) Genetic variability of Bacillus anthracis and related species. J. Clin. Microbiol. 33, 1847-1850.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 1847-1850
    • Harrell, L.J.1    Andersen, G.L.2    Wilson, K.H.3
  • 7
    • 0032526929 scopus 로고    scopus 로고
    • 16S-23S rRNA internal transcribed spacers as molecular markers for the species of the 16S rRNA group I of the genus Bacillus
    • Daffonchio, D., Borin, S., Consolandi, A., Mora, D., Manachini, P.L. and Sorlini, C. (1998) 16S-23S rRNA internal transcribed spacers as molecular markers for the species of the 16S rRNA group I of the genus Bacillus. FEMS Microbiol. Lett. 163, 229-236.
    • (1998) FEMS Microbiol. Lett. , vol.163 , pp. 229-236
    • Daffonchio, D.1    Borin, S.2    Consolandi, A.3    Mora, D.4    Manachini, P.L.5    Sorlini, C.6
  • 8
    • 0031424124 scopus 로고    scopus 로고
    • Single strand conformation polymorphism analysis of PCR-tDNA finger-printing to address the identification of Bacillus species
    • Borin, S., Daffonchio, D. and Sorlini, C. (1997) Single strand conformation polymorphism analysis of PCR-tDNA finger-printing to address the identification of Bacillus species. FEMS Microbiol. Lett. 157, 87-93.
    • (1997) FEMS Microbiol. Lett. , vol.157 , pp. 87-93
    • Borin, S.1    Daffonchio, D.2    Sorlini, C.3
  • 9
    • 0033025309 scopus 로고    scopus 로고
    • A randomly amplified polymorphic DNA marker specific for the Bacillus cereus group is diagnostic for Bacillus anthracis
    • Daffonchio, D., Borin, S., Frova, G., Gallo, R., Mori, E., Fani, R. and Sorlini, C. (1999) A randomly amplified polymorphic DNA marker specific for the Bacillus cereus group is diagnostic for Bacillus anthracis. Appl. Environ. Microbiol. 65, 1298-1303.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1298-1303
    • Daffonchio, D.1    Borin, S.2    Frova, G.3    Gallo, R.4    Mori, E.5    Fani, R.6    Sorlini, C.7
  • 11
    • 0031942626 scopus 로고    scopus 로고
    • PCR fingerprinting of whole genomes, the spacers between the 16S and 23S rRNA genes and of intergenic tRNA gene regions reveals a different intraspecific genomic variability of Bacillus cereus and Bacillus licheniformis
    • Daffonchio, D., Borin, S., Frova, G., Manachini, P.L. and Sorlini, C. (1998) PCR fingerprinting of whole genomes, the spacers between the 16S and 23S rRNA genes and of intergenic tRNA gene regions reveals a different intraspecific genomic variability of Bacillus cereus and Bacillus licheniformis. Int. J. Syst. Bacteriol. 48, 107-116.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 107-116
    • Daffonchio, D.1    Borin, S.2    Frova, G.3    Manachini, P.L.4    Sorlini, C.5
  • 12
    • 0026478536 scopus 로고
    • A one-step microbial DNA extraction method using 'Chelex 100' suitable for gene amplification
    • De Lamballerie, X., Zandotti, C., Vignoli, C., Bollet, C. and De Micco, P. (1992) A one-step microbial DNA extraction method using 'Chelex 100' suitable for gene amplification. Res. Microbiol. 142, 793-796.
    • (1992) Res. Microbiol. , vol.142 , pp. 793-796
    • De Lamballerie, X.1    Zandotti, C.2    Vignoli, C.3    Bollet, C.4    De Micco, P.5
  • 15
    • 0025305576 scopus 로고
    • Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies
    • Kwok, S., Kellog, D.E., McKinney, N., Goda, L., Levenson, C. and Sninsky, J.J. (1990) Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res. 18, 999-1005.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 999-1005
    • Kwok, S.1    Kellog, D.E.2    McKinney, N.3    Goda, L.4    Levenson, C.5    Sninsky, J.J.6
  • 16
    • 0029920941 scopus 로고    scopus 로고
    • Variable numbers of rRNA gene operons in Bacillus cereus strains
    • Johansen, T., Carlson, C.R. and Kolstø, A.B. (1996) Variable numbers of rRNA gene operons in Bacillus cereus strains. FEMS Microbiol. Lett. 136, 325-328.
    • (1996) FEMS Microbiol. Lett. , vol.136 , pp. 325-328
    • Johansen, T.1    Carlson, C.R.2    Kolstø, A.B.3
  • 17
    • 0345391017 scopus 로고    scopus 로고
    • Correlation of 16S ribosomal DNA signature sequences wilh temperature-dependent growth rates of mesophilic and psychrotolerant strains of the Bacillus cereus group
    • Pruss, B.M., Francis, K.P., von Stetten, F. and Scherer, S. (1999) Correlation of 16S ribosomal DNA signature sequences wilh temperature-dependent growth rates of mesophilic and psychrotolerant strains of the Bacillus cereus group. J. Bacteriol. 181, 2624-2630.
    • (1999) J. Bacteriol. , vol.181 , pp. 2624-2630
    • Pruss, B.M.1    Francis, K.P.2    Von Stetten, F.3    Scherer, S.4
  • 18
    • 0031857298 scopus 로고    scopus 로고
    • Bacillus pseudomycoides sp. nov
    • Nakamura, L.K. (1998) Bacillus pseudomycoides sp. nov.. Int. J. Syst. Bacteriol. 48, 1031-1035.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 1031-1035
    • Nakamura, L.K.1
  • 19
    • 0031740480 scopus 로고    scopus 로고
    • Rapid discrimination of psychrotoleranl and mesophilic strains of the Bacillus cereus group by PCR targeting of 16S rDNA
    • von Stetten, F., Francis, K.P., Lechner, S., Neuhaus, K. and Scherer, S. (1998) Rapid discrimination of psychrotoleranl and mesophilic strains of the Bacillus cereus group by PCR targeting of 16S rDNA. J. Microbiol. Methods 34, 99-106.
    • (1998) J. Microbiol. Methods , vol.34 , pp. 99-106
    • Stetten, F.1    Francis, K.P.2    Lechner, S.3    Neuhaus, K.4    Scherer, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.