Organization and post transcriptional processing of the psbB operon from chloroplasts of Populus deltoides

Current Genetics

Volumn 36, Issue 3, 1999, Pages 165-172

  Dixit, Rekha ^a   Trivedi, Prabodh K ^a   Nath, Pravendra ^a   Sane, Prafullachandra V ^a  

^a CSIR NATIONAL BOTANICAL RESEARCH INSTITUTE   (India)

Author keywords

Gene organization; Populus deltoides; PsbB operon; RNA processing

Indexed keywords

CHLOROPLAST RNA; CYTOCHROME B;

ARTICLE; BIOGENESIS; CHLOROPLAST; CROP; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PLANT; PRIORITY JOURNAL; PROTEIN PROCESSING; SPECIES DIFFERENCE; TREE;

AMINO ACID SEQUENCE; BASE SEQUENCE; BLOTTING, NORTHERN; CHLOROPLASTS; GENE EXPRESSION REGULATION, PLANT; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; OPERON; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PHOTOSYSTEM II PROTEIN COMPLEX; PLANT PROTEINS; RECOMBINANT PROTEINS; RNA PROCESSING, POST-TRANSCRIPTIONAL; SEQUENCE ANALYSIS, DNA; TREES;

EID: 0032823593     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002940050487     Document Type: Article

References (31)

1. Allison LA, Simon LD, Maliga P (1996) Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J 15:2802-2809
2. Barkan A (1988) Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic mRNAs. EMBO J 7:2637-2644
3. Barkan A, Miles D, Taylor W (1986) Chloroplast gene expression in nuclear photosynthetic mutants of maize. EMBO J 5:1421-1427
4. Barkan A, Walker M, Nolasco M, Johnson D (1994) A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for differential translation of alternative mRNA forms. The EMBO J 13:3170-3181
5. Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nuclei Acids Res 7:1513-1523
6. Gruissem W, Schuster G (1993) Control of mRNA degradation in organelles. In: Belasco JG, Brawerman G (eds) Control of messenger RNA stability, Academic Press, Orlando, Florida, pp 329-365
7. Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo C, Hongi Y, Sun CR, Meng B-Y, Li Y-Q, Kanno A, Nishizawa Y, Hirai A, Shinozaki K, Sugiura M (1989) The complete sequence of the rice (Oryza saliva) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals. Mol Gen Genet 217:185-194
8. Hird SM, Webber AN, Wilson RJ, Dyer TA, Gray JC (1991) Differential expression of the psbB and psbH genes encoding the 47-kDa chlorophyll a-protein and the 10-kDa phosphoprotein of photosystem II during chloroplast development in wheat. Curr Genet 19:199-206
9. Hong L, Stererson JK, Roth WB, Hallick RB (1995) Euglena gracitis chloroplast psbB, psbT, psbH and psbN gene cluster: regulation of psbB-psbT pre-mRNA processing. Mol Gen Genet 247:180-188
10. Ikeuchi M, Koike H, Inoue Y (1989) N-terminal sequencing of low-molecular-mass components in cyanobacterial photosystem-II core complex. Two components correspond to unidentified open reading frames of plant chloroplast DNA. FEBS Lett 253:178-182
11. Johnson CH, Schmidt GW (1993) The psbE gene cluster of the Chlamydomonas reinhardtii chloroplast: sequence and transcriptional analysis of psbN and psbti. Plant Mol Biol 22:645-658
12. Kohchi T, Yoshida T, Komono T, Ohyama K (1988) Divergent mRNA transcription in the chloroplast psbQ operon. EMBO J 7:885-891
13. Lipman DJ, Pearson WR (1985) Rapid and sensitive protein similarity search. Science 227:1435-1441
14. MacDonald RJ, Swift GH, Przybyla AE, Chirgwin JM (1987) Isolation of RNA using guanidinium salts. Methods Enzymol 152:219-223
15. Maier RM, Neckermann K, Igloi GI, Kossel H (1995) Complete sequence of the maize chloroplast genome: gene content, hot-spots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol 251:614-628
16. Mayfield SP, Yohn CB, Cohen A, Danon A (1995) Regulation of chloroplast gene expression. Annu Rev Plant Physiol Plant Mol Biol 46:147-166
17. Meurer J, Berger A, Westhoff P (1996) A nuclear mutant of Arabidopsis with impaired stability of distinct transcripts of the plastid psbB, psbD/C, ndhH and ndhC operon. Plant Cell 8:1193-1207
18. Nath P, Sane AP, Bijola V, Trivedi PK, Arora J, Sane PV (1993) A simple method for the purification of organelle DNA of plants. J Plant Biochem Biotechnol 2:117-120
19. Ohyama K, Fukuzawa H, Kochi T, Shirai H, Sano T, Sano S, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H (1986) Chloroplast gene organization deduced from the complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322:572-574
20. Rock CD, Barkan A, Taylor WC (1987) The maize plastid psbB-psbF-petR-petD gene cluster: spliced and unspliced petR and petD RNAs encode alternative products. Curr Genet 12:69-77
21. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbour Laboratory, Cold Spring Harbour, New York
22. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
23. Shine J, Dalgarno L (1974) The 3′-terminal sequence of E. coli 16S rRNA complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci USA 71:1342-1346
24. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohio C, Torazana K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5:2043-2049
25. Suguira M (1992) The chloroplast genome. Plant Mol Biol 19:149-168
26. Tanaka M, Obokata J, Chunwongse J, Shinozaki K, Suguira M (1987) Rapid splicing and stepwise processing of a transcript from the psbB operon in tobacco chloroplasts: determination of the intron sites in petB and petD. Curr Genet 209:427-431
27. Trivedi PK., Nath P, Sane PV (1994) Characterization of psbA from the chloroplast genome of Populus deltoides. J Plant Biochem Biotechnol 3:97-102
28. Vera A, Sugiura M (1995) Chloroplast rRNA transcription from structurally tandem promoters: an additional novel-type promoter. Curr Genet 27:280-284
29. Wakasugi T, Tsudsuki J, Ito S, Nakashima K, Tsudsuki T, Sugiura M (1994) Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proc Natl Acad Sci USA 91:9794-9798
30. Westhoff P, Herrmann RG (1988) Complex RNA maturation in the chloroplast: the psbB operon from spinach. Eur J Biochem 171:551-564
31. Wolfe KH, Morden CW, Palmer JD (1992) Function and evolution of a minimal plastid genome from a non-photosynthetic parasitic plant. Proc Natl Acad Sci USA 89:10648-10652