Cloning of a cDNA encoding a sequence-specific single-stranded-DNA-binding protein from Rattus norvegicus

Gene

Volumn 237, Issue 1, 1999, Pages 201-207

  Raval Fernandes, Sujna ^a   Kickhoefer, Valerie A ^a   Rome, Leonard H ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Collagen; G21.3 monoclonal antibody; Gene regulation; Rat cDNA

Indexed keywords

COLLAGEN; COMPLEMENTARY DNA; DNA BINDING PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHICKEN; COLLAGEN SYNTHESIS; HUMAN; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; RAT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; CHICKENS; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION; HUMANS; MICE; MOLECULAR SEQUENCE DATA; RATS; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0032817320     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00289-9     Document Type: Article

References (38)

1. Bai G., Norton D.D., Prenger M.S., Kusiak J.W. Single-stranded DNA-binding proteins and neuron-restrictive silencer factor participate in cell-specific transcriptional control of the NMDAR1 gene. J. Biol. Chem. 273:1998;1086-1091.
2. Bayarsaihan D., Lukens L.N. Single-strand-DNA-binding factors specifically recognize the pyrimidine element in the chick alpha2(I) collagen gene promoter. Biochem. J. 314:1996;293-296.
3. Bayarsaihan D., Soto R.J., Lukens L.N. Cloning and characterization of a novel sequence-specific single-stranded-DNA-binding protein. Biochem. J. 331:1998;447-452.
4. Beck K.M., Seekamp A.H., Askew G.R., Mei Z., Farrell C.M., Wang S., Lukens L.N. Association of a change in chromatin structure with a tissue-specific switch in transcription start sites in the alpha 2(I) collagen gene. Nucleic Acids Res. 19:1991;4975-4982.
5. Brunel F., Alzari P.M., Ferrara P., Zakin M.M. Cloning and sequencing of PYBP, a pyrimidine-rich specific single strand DNA-binding protein. Nucleic Acids Res. 19:1991;5237-5245.
6. Carmichael E.P., Roome J.M., Wahl A.F. Binding of a sequence-specific single-stranded DNA-binding factor to the simian virus 40 core origin inverted repeat domain is cell cycle regulated. Mol. Cell. Biol. 13:1993;408-420.
7. Chase J.W., Williams K.R. Single-stranded DNA binding proteins required for DNA replication. Annu. Rev. Biochem. 55:1986;103-136.
8. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:1987;156-159.
9. Cleghon V., Klessig D.F. Characterization of the nucleic acid binding region of adenovirus DNA binding protein by partial proteolysis and photochemical cross-linking. J. Biol. Chem. 267:1992;17872-17881.
10. Edelmann W., Kroger B., Goller M., Horak I. A recombination hotspot in the LTR of a mouse retrotransposon identified in an in vitro system. Cell. 57:1989;937-946.
11. Erdile L.F., Heyer W.D., Kolodner R., Kelly T.J. Characterization of a cDNA encoding the 70-kDa single-stranded DNA-binding subunit of human replication protein A and the role of the protein in DNA replication. J. Biol. Chem. 266:1991;12090-12098. published erratum appears in J. Biol. Chem. 268, 2268.
12. Feavers I.M., McEwan I.J., Liang H., Jost J.P. An estradiol-dependent protein from chicken liver binds single-stranded DNA and RNA. J. Biol. Chem. 264:1989;9114-9117.
13. Finer M.H., Fodor E.J., Boedtker H., Doty P. Endonuclease S1-sensitive site in chicken pro-alpha 2(I) collagen 5′ flanking gene region. Proc. Natl. Acad. Sci. USA. 81:1984;1659-1663.
14. Flavin M., Strauss F. Multiple sequence-specific single-strand-binding proteins for the promoter region of the rat albumin gene. DNA Cell Biol. 10:1991;113-118.
15. Gaillard C., Strauss F. Sequence-specific single-strand-binding protein for the simian virus 40 early promoter stimulates transcription in vitro. J. Mol. Biol. 215:1990;245-255.
16. Haas S., Steplewski A., Siracusa L.D., Amini S., Khalili K. Identification of a sequence-specific single-stranded DNA binding protein that suppresses transcription of the mouse myelin basic protein gene. J. Biol. Chem. 270:1995;12503-12510.
17. Hollingsworth M.A., Closken C., Harris A., McDonald C.D., Pahwa G.S., Maher L.J. 3rd. A nuclear factor that binds purine-rich, single-stranded oligonucleotides derived from S1-sensitive elements upstream of the CFTR gene and the MUC1 gene. Nucleic Acids Res. 22:1994;1138-1146.
18. Ito K., Sato K., Endo H. Cloning and characterization of a single-stranded DNA binding protein that specifically recognizes deoxycytidine stretch. Nucleic Acids Res. 22:1994;53-58.
19. Jansen-Durr P., Boshart M., Lupp B., Bosserhoff A., Frank R.W., Schutz G. The rat poly pyrimidine tract binding protein (PTB) interacts with a single-stranded DNA motif in a liver-specific enhancer. Nucleic Acids Res. 20:1992;1243-1249.
20. Kim C., Snyder R.O., Wold M.S. Binding properties of replication protein A from human and yeast cells. Mol. Cell. Biol. 12:1992;3050-3059.
21. Kolluri R., Torrey T.A., Kinniburgh A.J. A CT promoter element binding protein: definition of a double-strand and a novel single-strand DNA binding motif. Nucleic Acids Res. 20:1992;111-116.
22. Kozak M. Interpreting cDNA sequences: some insights from studies on translation. Mamm. Genome. 7:1996;563-574.
23. McKeon C., Pastan I., de Crombrugghe B. DNase I sensitivity of the alpha 2(I) collagen gene: correlation with its expression but not with its methylation pattern. Nucleic Acids Res. 12:1984;3491-3502.
24. McKeon C., Schmidt A., de Crombrugghe B. A sequence conserved in both the chicken and mouse alpha 2(I) collagen promoter contains sites sensitive to S1 nuclease. J. Biol. Chem. 259:1984;6636-6640.
25. Mukherjee R., Chambon P. A single-stranded DNA-binding protein promotes the binding of the purified oestrogen receptor to its responsive element. Nucleic Acids Res. 18:1990;5713-5716.
26. Muraiso T., Nomoto S., Yamazaki H., Mishima Y., Kominami R. A single-stranded DNA binding protein from mouse tumor cells specifically recognizes the C-rich strand of the (AGG:CCT)n repeats that can alter DNA conformation. Nucleic Acids Res. 20:1992;6631-6635.
27. Notterpek L.M., Rome L.H. Functional evidence for the role of axolemma in CNS myelination. Neuron. 13:1994;473-485.
28. Pan W.T., Liu Q.R., Bancroft C. Identification of a growth hormone gene promoter repressor element and its cognate double- and single-stranded DNA-binding proteins. J. Biol. Chem. 265:1990;7022-7028.
29. Quinn J.P., McAllister J. The preprotachykinin A promoter interacts with a sequence specific single stranded DNA binding protein. Nucleic Acids Res. 21:1993;1637-1641.
30. Raval-Fernandes S., Sawant L.A., Aebersold R.H., Ducret A., Rome L.H. Axonal proteins involved in myelination, characterization of a collagen-like protein. Dev. Neurosci. 19:1997;421-429.
31. Rehn M., Pihlajaniemi T. α1(XVIII), a collagen chain with frequent interruptions in the collagenous sequence, a distinct tissue distribution, and homology with type XV collagen. Proc. Natl. Acad. Sci. USA. 91:1994;4234-4238.
32. St. John T.P. Immunoscreening of fusion proteins produced in lambda plaques. Ausubel F.M., Brent R., et al. Current Protocols in Molecular Biology. 1990;Wiley, New York.
33. Schmidt A., Yamada Y., de Crombrugghe B. DNA sequence comparison of the regulatory signals at the 5′ end of the mouse and chick alpha 2 type I collagen genes. J. Biol. Chem. 259:1984;7411-7415.
34. Smidt M.P., Russchen B., Snippe L., Wijnholds J., Ab G. Cloning and characterisation of a nuclear, site specific ssDNA binding protein. Nucleic Acids Res. 23:1995;2389-2395.
35. Stark H.C., Weinberger O., Weinberger J. Common double- and single-stranded DNA binding factor for a sterol regulatory element. Proc. Natl. Acad. Sci. USA. 89:1992;2180-2184.
36. Wilkison W.O., Min H.Y., Claffey K.P., Satterberg B.L., Spiegelman B.M. Control of the adipsin gene in adipocyte differentiation. Identification of distinct nuclear factors binding to single- and double-stranded DNA. J. Biol. Chem. 265:1990;477-482.
37. Yamazaki H., Nomoto S., Mishima Y., Kominami R. A 35-kDa protein binding to a cytosine-rich strand of hypervariable minisatellite DNA. J. Biol. Chem. 267:1992;12311-12316.
38. Yee H.A., Wong A.K., van de Sande J.H., Rattner J.B. Identification of novel single-stranded d(TC)n binding proteins in several mammalian species. Nucleic Acids Res. 19:1991;949-953.