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Volumn 181, Issue 16, 1999, Pages 4937-4948

Excision of IS492 requires flanking target sequences and results in circle formation in Pseudoalteromonas atlantica

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL POLYSACCHARIDE; BACTERIAL PROTEIN; CIRCULAR DNA; TRANSPOSASE;

EID: 0032816640     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.16.4937-4948.1999     Document Type: Article
Times cited : (50)

References (37)
  • 2
    • 0001589397 scopus 로고
    • Variable expression of extracellular polysaccharide in the marine bacterium Pseudomonas atlantica is controlled by genome rearrangement
    • Bartlett, D. H., M. E. Wright, and M. Silverman. 1988. Variable expression of extracellular polysaccharide in the marine bacterium Pseudomonas atlantica is controlled by genome rearrangement. Proc. Natl. Acad. Sci. USA 85:3923-3927.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 3923-3927
    • Bartlett, D.H.1    Wright, M.E.2    Silverman, M.3
  • 3
    • 0024636539 scopus 로고
    • Nucleotide sequence of IS492, a novel insertion sequence causing variation in extracellular polysaccharide production in the marine bacterium Pseudomonas atlantica
    • Bartlett, D. H., and M. Silverman. 1989. Nucleotide sequence of IS492, a novel insertion sequence causing variation in extracellular polysaccharide production in the marine bacterium Pseudomonas atlantica. J. Bacteriol. 171:1763-1766.
    • (1989) J. Bacteriol. , vol.171 , pp. 1763-1766
    • Bartlett, D.H.1    Silverman, M.2
  • 4
    • 0013567429 scopus 로고
    • Cloning and gene replacement mutagenesis of a Pseudomonas atlantica agarase gene
    • Belas, R., D. Bartlett, and M. Silverman. 1988. Cloning and gene replacement mutagenesis of a Pseudomonas atlantica agarase gene. Appl. Environ. Microbiol. 54:30-37.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 30-37
    • Belas, R.1    Bartlett, D.2    Silverman, M.3
  • 5
    • 0017869759 scopus 로고
    • Two new species of Alteromonas: Alteromonas espejiana and Alteromonas undina
    • Chan, K. Y., L. Baumann, M. M. Garza, and P. Baumann. 1978. Two new species of Alteromonas: Alteromonas espejiana and Alteromonas undina. Int. J. Syst. Bacteriol. 28:217-222.
    • (1978) Int. J. Syst. Bacteriol. , vol.28 , pp. 217-222
    • Chan, K.Y.1    Baumann, L.2    Garza, M.M.3    Baumann, P.4
  • 6
    • 0002467865 scopus 로고
    • Attachment of marine bacteria to solid surfaces
    • R. S. Manley (ed.), Academic Press, New York, N.Y.
    • Corpe, W. A, 1970. Attachment of marine bacteria to solid surfaces, p. 73-87. In R. S. Manley (ed.), Adhesion in biological systems. Academic Press, New York, N.Y.
    • (1970) Adhesion in Biological Systems , pp. 73-87
    • Corpe, W.A.1
  • 7
    • 0344852868 scopus 로고
    • Microfouling: The role of primary film forming marine bacteria
    • Northwestern University Press, Evanston, III
    • Corpe, W. A. 1973. Microfouling: the role of primary film forming marine bacteria, p. 598-609. In Proceedings of the 3rd International Congress on Marine Corrosion and Fouling. Northwestern University Press, Evanston, III.
    • (1973) Proceedings of the 3rd International Congress on Marine Corrosion and Fouling , pp. 598-609
    • Corpe, W.A.1
  • 8
    • 0001908773 scopus 로고    scopus 로고
    • Transposition
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, D.C.
    • Craig, N. 1996. Transposition, p. 2339-2362. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 2339-2362
    • Craig, N.1
  • 9
    • 0024616602 scopus 로고
    • Position and density effects on repression by stationary and mobile DNA-binding proteins
    • Elledge, S. J. and R. W. Davis. 1989. Position and density effects on repression by stationary and mobile DNA-binding proteins. Genes Dev. 3:185-197.
    • (1989) Genes Dev. , vol.3 , pp. 185-197
    • Elledge, S.J.1    Davis, R.W.2
  • 10
    • 0025786599 scopus 로고
    • A single promoter-cloning vector for use in E. coli
    • Froehlich, B. J., and J. R. Scott. 1991. A single promoter-cloning vector for use in E. coli. Gene 108:99-101.
    • (1991) Gene , vol.108 , pp. 99-101
    • Froehlich, B.J.1    Scott, J.R.2
  • 11
    • 0028799334 scopus 로고
    • Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations
    • Gauthier, G., M. Gauthier, and R. Christen. 1995. Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int. J. Sys. Bacteriol. 45:755-761.
    • (1995) Int. J. Sys. Bacteriol. , vol.45 , pp. 755-761
    • Gauthier, G.1    Gauthier, M.2    Christen, R.3
  • 12
    • 0021272019 scopus 로고
    • Regeneration of insertionally inactivated streptococcal DNA fragments after excision of transposon Tn916 in Escherichia coli: Strategy for targeting and cloning of genes from gram-positive bacteria
    • Gawron-Burke, C., and D. B. Clewell. 1984. Regeneration of insertionally inactivated streptococcal DNA fragments after excision of transposon Tn916 in Escherichia coli: strategy for targeting and cloning of genes from gram-positive bacteria. J. Bacteriol. 159:214-221.
    • (1984) J. Bacteriol. , vol.159 , pp. 214-221
    • Gawron-Burke, C.1    Clewell, D.B.2
  • 13
    • 0344761841 scopus 로고
    • Structural and functional analysis of the mini-circle, a transposable element of Streptomyces coelkolor A3(2) mini-circle to and from a cloned target site and into secondary chromosomal sites
    • Henderson, D. J., D. J. Lydiate, and D. A. Hopwood. 1989. Structural and functional analysis of the mini-circle, a transposable element of Streptomyces coelkolor A3(2) mini-circle to and from a cloned target site and into secondary chromosomal sites. Mol. Gen. Genet. 224:65-71.
    • (1989) Mol. Gen. Genet. , vol.224 , pp. 65-71
    • Henderson, D.J.1    Lydiate, D.J.2    Hopwood, D.A.3
  • 14
    • 0024059137 scopus 로고
    • Phase variation in Salmonella, analysis of Hin recombinase and hix recombination site interaction in vivo
    • Hughes, K. T., P. Youderian, and M. I. Simon. 1988. Phase variation in Salmonella, analysis of Hin recombinase and hix recombination site interaction in vivo. Genes Dev. 2:937-948.
    • (1988) Genes Dev. , vol.2 , pp. 937-948
    • Hughes, K.T.1    Youderian, P.2    Simon, M.I.3
  • 15
    • 0028361886 scopus 로고
    • Evidence that coupling sequences play a frequency-determining role in conjugative transposition of Tn916 in Enterococcus faecalis
    • Jaworski, D. D., and D. B. Clewell. 1994. Evidence that coupling sequences play a frequency-determining role in conjugative transposition of Tn916 in Enterococcus faecalis. J. Bacteriol. 176:3328-3335.
    • (1994) J. Bacteriol. , vol.176 , pp. 3328-3335
    • Jaworski, D.D.1    Clewell, D.B.2
  • 16
    • 0027435209 scopus 로고
    • Mechanistic and structural complexity in the site-specific recombination pathway of Int and Flp
    • Landy, A. 1993. Mechanistic and structural complexity in the site-specific recombination pathway of Int and Flp. Curr. Opin. Genet. Dev. 3:699-707.
    • (1993) Curr. Opin. Genet. Dev. , vol.3 , pp. 699-707
    • Landy, A.1
  • 17
    • 0028334070 scopus 로고
    • Amino acid sequence homology between Piv, an essential protein in site-specific DNA inversion in Moraxella lacunata, and transposases of an unusual family of insertion elements
    • Lenich, A. G, and A. C. Glasgow. 1994. Amino acid sequence homology between Piv, an essential protein in site-specific DNA inversion in Moraxella lacunata, and transposases of an unusual family of insertion elements. J. Bacteriol. 176:4160-4164.
    • (1994) J. Bacteriol. , vol.176 , pp. 4160-4164
    • Lenich, A.G.1    Glasgow, A.C.2
  • 18
    • 0030875734 scopus 로고    scopus 로고
    • Two abundant intramolecular transposition products, resulting from reactions initiated at a single end, suggest that IS2 transposes by an unconventional pathway
    • Lewis, L. A., and N. D. F. Grindley. 1997. Two abundant intramolecular transposition products, resulting from reactions initiated at a single end, suggest that IS2 transposes by an unconventional pathway. Mol. Microbiol. 25:517-529.
    • (1997) Mol. Microbiol. , vol.25 , pp. 517-529
    • Lewis, L.A.1    Grindley, N.D.F.2
  • 19
    • 0022456192 scopus 로고
    • A 2.6 kb DNA sequence of Streptomyces coelicolor A3(2) which functions as a transposable element
    • Lydiate, D. J., H. Ikeda, and D. A. Hopwood. 1986. A 2.6 kb DNA sequence of Streptomyces coelicolor A3(2) which functions as a transposable element. Mol. Gen. Genet. 203:79-88.
    • (1986) Mol. Gen. Genet. , vol.203 , pp. 79-88
    • Lydiate, D.J.1    Ikeda, H.2    Hopwood, D.A.3
  • 21
    • 0028199682 scopus 로고
    • Differential roles of the transposon termini in IS91 transposition
    • Mendiola. M. V., I. Bernales, and F. de la Cruz. 1994. Differential roles of the transposon termini in IS91 transposition. Proc. Natl. Acad. Sci. USA 91:1922-1926.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1922-1926
    • Mendiola, M.V.1    Bernales, I.2    De La Cruz, F.3
  • 22
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
    • Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 23
    • 0023649271 scopus 로고
    • Tn10 transposition and circle formation in vitro
    • Morisato, D., and N. Kleckner. 1987. Tn10 transposition and circle formation in vitro. Cell 51:101-111.
    • (1987) Cell , vol.51 , pp. 101-111
    • Morisato, D.1    Kleckner, N.2
  • 24
    • 0000078911 scopus 로고    scopus 로고
    • Site-specific recombination: Integration, excision, resolution, and inversion of defined DNA segments
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), ASM Press, Washington, D.C.
    • Nash, H. 1996. Site-specific recombination: integration, excision, resolution, and inversion of defined DNA segments, p. 2363-2376. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 2363-2376
    • Nash, H.1
  • 25
    • 0001305277 scopus 로고
    • Amplification of flanking DNA by inverse PCR
    • M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), Academic Press, Inc., San Diego, Calif
    • Ochman, H., M. M. Medhora, D. Garza, and D. L. Hartl. 1990. Amplification of flanking DNA by inverse PCR, p. 219-227. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), PCR protocols. Academic Press, Inc., San Diego, Calif.
    • (1990) PCR Protocols , pp. 219-227
    • Ochman, H.1    Medhora, M.M.2    Garza, D.3    Hartl, D.L.4
  • 26
    • 0027064858 scopus 로고
    • Transposase-induced excision and circularization of the bacterial insertion sequence IS911
    • Polard, P., M. F. Prere, O. Fayet, and M. Chandler. 1992. Transposase-induced excision and circularization of the bacterial insertion sequence IS911. EMBO J. 11:5079-5090.
    • (1992) EMBO J. , vol.11 , pp. 5079-5090
    • Polard, P.1    Prere, M.F.2    Fayet, O.3    Chandler, M.4
  • 27
    • 0015891782 scopus 로고
    • Change of the name Alteromonas marinopraesens (ZoBell and Upham) Baumann et al, to Alteromonas haloplanktis (ZoBell and Upham) comb. nov. and assignment of strain ATCC 23821 (Pseudomonas enali) and strain C-A1 of DeVoe and Oginsky to this species
    • Reichelt, J. L., and P. Baumann. 1973. Change of the name Alteromonas marinopraesens (ZoBell and Upham) Baumann et al, to Alteromonas haloplanktis (ZoBell and Upham) comb. nov. and assignment of strain ATCC 23821 (Pseudomonas enali) and strain C-A1 of DeVoe and Oginsky to this species. Int. J. Syst. Bacteriol. 23:438-441.
    • (1973) Int. J. Syst. Bacteriol. , vol.23 , pp. 438-441
    • Reichelt, J.L.1    Baumann, P.2
  • 29
    • 0022529269 scopus 로고
    • Promoter-probe vectors for the analysis of divergently arranged promoters
    • Schneider, K., and C. F. Beck. 1986. Promoter-probe vectors for the analysis of divergently arranged promoters. Gene 42:37-48.
    • (1986) Gene , vol.42 , pp. 37-48
    • Schneider, K.1    Beck, C.F.2
  • 30
    • 0028214048 scopus 로고
    • Translational control in production of transposase and in transposition of insertion sequence IS3
    • Sekine, Y., N. Eisaki, and E. Ohtsubo. 1994. Translational control in production of transposase and in transposition of insertion sequence IS3. J. Mol. Biol. 135:1406-1420.
    • (1994) J. Mol. Biol. , vol.135 , pp. 1406-1420
    • Sekine, Y.1    Eisaki, N.2    Ohtsubo, E.3
  • 31
    • 0030961895 scopus 로고    scopus 로고
    • Isolation and characterization of IS1 circles
    • Sekine, Y., N. Eisaki, K. Kobayashi, and E. Ohtsubo. 1997. Isolation and characterization of IS1 circles. Gene 191:183-190.
    • (1997) Gene , vol.191 , pp. 183-190
    • Sekine, Y.1    Eisaki, N.2    Kobayashi, K.3    Ohtsubo, E.4
  • 32
    • 0028180325 scopus 로고
    • Transposition of IS117, the 2.5 kb Streptomyces coelicolor A3(2) 'minicircle': Roles of open reading frames and origin of tandem insertions
    • Smokvina, T., D. J. Henderson, R. E. Melton, D. Brolle, T. Kieser, and D. Hopwood. 1994. Transposition of IS117, the 2.5 kb Streptomyces coelicolor A3(2) 'minicircle': roles of open reading frames and origin of tandem insertions. Mol. Microbiol. 12:459-468.
    • (1994) Mol. Microbiol. , vol.12 , pp. 459-468
    • Smokvina, T.1    Henderson, D.J.2    Melton, R.E.3    Brolle, D.4    Kieser, T.5    Hopwood, D.6
  • 33
    • 0033515602 scopus 로고    scopus 로고
    • Multiple DNA binding activities of the novel site-specific recombinase, Piv, from Moraxella lacunata
    • Tobiason, D. M., A. G. Lenich, and A. C. Glasgow. 1999. Multiple DNA binding activities of the novel site-specific recombinase, Piv, from Moraxella lacunata. J. Biol. Chem. 274:9698-9706.
    • (1999) J. Biol. Chem. , vol.274 , pp. 9698-9706
    • Tobiason, D.M.1    Lenich, A.G.2    Glasgow, A.C.3
  • 34
    • 18244413221 scopus 로고    scopus 로고
    • Assembly of a strong promoter following IS911 circularization and the role of circles in transposition
    • Ton-Hoang, B., M. Betermier., P. Polard, and M. Chandler. 1997. Assembly of a strong promoter following IS911 circularization and the role of circles in transposition. EMBO J. 16:3357-3371.
    • (1997) EMBO J. , vol.16 , pp. 3357-3371
    • Ton-Hoang, B.1    Betermier, M.2    Polard, P.3    Chandler, M.4
  • 35
    • 0032481375 scopus 로고    scopus 로고
    • Efficient transposition of IS911 circles in vitro
    • Ton-Hoang, B., P. Polard, and M. Chandler. 1998. Efficient transposition of IS911 circles in vitro. EMBO J. 17:1169-1181.
    • (1998) EMBO J. , vol.17 , pp. 1169-1181
    • Ton-Hoang, B.1    Polard, P.2    Chandler, M.3
  • 36
    • 0026754801 scopus 로고
    • Flanking host sequences can exert an inhibitory effect on the cleavage step of the in vitro Mu DNA strand transfer reaction
    • Wu, Z., and G. Chaconas. 1992. Flanking host sequences can exert an inhibitory effect on the cleavage step of the in vitro Mu DNA strand transfer reaction. J. Biol. Chem. 267:9552-9558.
    • (1992) J. Biol. Chem. , vol.267 , pp. 9552-9558
    • Wu, Z.1    Chaconas, G.2
  • 37
    • 33744481792 scopus 로고
    • The use of agarase from Pseudomonas atlantica in the identification of agar in marine algae (Rhodophycae)
    • Yaphe, W. 1957. The use of agarase from Pseudomonas atlantica in the identification of agar in marine algae (Rhodophycae). Can. J. Microbiol. 3:987-993.
    • (1957) Can. J. Microbiol. , vol.3 , pp. 987-993
    • Yaphe, W.1


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