Selective sweep at the Drosophila melanogaster Suppressor of Hairless locus and its association with the In(2L)T inversion polymorphism

Genetics

Volumn 152, Issue 3, 1999, Pages 1017-1024

  Depaulis, Frantz ^a   Brazier, Lionel ^a   Veuille, Michel ^a,b  

^a SORBONNE UNIVERSITÉ   (France)

^b PSL RESEARCH UNIVERSITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BASE PAIRING; CHROMOSOME REARRANGEMENT; DROSOPHILA MELANOGASTER; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE MUTATION; GENETIC POLYMORPHISM; HAPLOTYPE; NATURAL SELECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ANIMALS; BASE SEQUENCE; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; HAPLOTYPES; INVERSION, CHROMOSOME; LINKAGE DISEQUILIBRIUM; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; REPRESSOR PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID; VARIATION (GENETICS);

DARWINIA; DROSOPHILA MELANOGASTER; MELANOGASTER;

EID: 0032814844     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (52)

1. AGUADÉ, M., 1998 Different forces drive the evolution of the Acp26Aa and Acp26Ab accessory gland genes in the Drosophila melanogaster species complex. Genetics 150: 1079-1089.
2. AGUADÉ, M., N. MIVASHITA and C. F. LANGLEY, 1989 Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster. Genetics 122: 607-615.
3. ARTAVANIS-TSAKONAS, S., K. MATSUNO and M. E. FORTINI, 1995 Notch signalling. Science 268: 225-232.
4. ASHBURNER, M., 1989 Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
5. BABCOCK, C. S., and W. W. ANDERSON, 1996 Molecular evolution of the Sex-Ratio inversion complex in Drosophila pseudoobscura: analysis of the Esterase-5 gene region. Mol. Biol. Evol. 13:297-308.
6. BARTON, N. H., 1998 The effect of hitch-hiking on neutral genealogies. Genet. Res. 72: 123-133.
7. BEGUN, D. J., and C. F. AQUADRO, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in Drosophila melanogaster. Nature 356: 519-520.
8. BENASSI, V., and M. VEUILLE, 1995 Comparative population structuring of molecular and allozyme variation of Drosophila melanogaster Adh between Europe, West Africa and East Africa. Genet. Res. 65: 95-103.
9. BENASSI, V., S. AULARD, S. MAZEAU and M. VEUILLE, 1993 Molecular variation of Adh and FBP2 genes in an African population of Drosophila melanogaster and its relation to chromosomal inversions. Genetics 134: 789-799.
10. BENASSI, V., F. DEPAULIS, G. K. MEGHLAOUI and M. VEUILLE, 1999 Partial sweeping of variation at the Fbp2 locus in a West African population of Drosophila melanogaster. Mol. Biol. Evol. 16:347-353.
11. CHARLESWORTH, B., 1998 Measures of divergence between populations and the effect of forces that reduce variability. Mol. Biol. Evol. 15: 538-543.
12. CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
13. CHARLESWORTH, D., B. CHARLESWORTH and M. T. MORGAN, 1995 The pattern of neutral molecular variation under the background selection model. Genetics 141: 1619-1632.
14. CHOVNIK, A., W. GELBART and M. MCCARRON, 1977 Organization of the Rosy locus in Drosophila melanogaster. Cell 11: 1-10.
15. DEPAULIS, F., and M. VEUILLE, 1998 Neutrality tests based on the distribution of haplotypes under an infinite site model. Mol. Biol. Evol. 15: 1788-1790.
16. FU, Y. X., and W. H. LI, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
17. K recombination signal sequence. J. Biol. Chem. 266: 23334-23340.
18. HASSON, E., and W. F. EANES, 1996 Contrasting histories of three gene regions associated with In(3L)Payne of Drosophila melanogaster. Genetics 144: 1565-1575.
19. HUDSON, R. R., 1987 Estimating the recombination parameter of a finite population model without selection. Genet. Res. 50: 245-250.
20. HUDSON, R. R., and N. L. KAPLAN, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
21. HUDSON, R. R., and N. L. KAPLAN, 1995 Deleterious background mutations with recombination. Genetics 141: 1605-1617.
22. HUDSON, R. R., M. KREITMAN and M. AGUAUÉ, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
23. HUDSON, R. R., M. SLATKIN and W. P. MADDISON, 1992 Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
24. HUDSON, R. R., K. BAILEY, D. SKARECKY, J. KWIATOWSKI and F. J. AYALA, 1994 Evidence for a positive selection in the Superoxide Dismutase (Sod) region of Drosophila melanogaster. Genetics 136: 1329-1340.
25. KAPLAN, N. L., R. R. HUDSON and C. H. LANGLEY, 1989 The hitch-hiking effect revisited. Genetics 123: 887-899.
26. KIRBY, D. A., and W. STEPHAN, 1996 Multi-locus selection and the structure of variation at the white gene of Drosophila melanogaster. Genetics 114: 635-645.
27. KREITMAN, M., and R. R. HUDSON, 1991 Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from pattern of polymorphism and divergence. Genetics 127: 565-582.
28. KRIMBAS, C. B., and J. R. POWELL, 1992 Drosophila Inversion Polymorphism. CRC Press, Cleveland.
29. KUMAR, S., K. TAMURA and M. NEI, 1993 MEGA: Molecular Evolutionary Genetics Analysis version 1.01. The Pennsylvania State University, University Park, PA.
30. LEMEUNIER, F., and S. AULARD, 1992 Inversion polymorphism in Drosophila melanogaster, pp. 339-405 in Drosophila Inversion Polymorphism, edited by C. B. KRIMBAS and J. R. POWELL. CRC Press, Cleveland.
31. LEWONTIN, R. C., J. A. MOORE, W. B. PROVINE and B. WALLACE, 1981 Dobzhansky's Genetics of Natural Populations. Columbia University Press, New York.
32. MCDONALD, J. H., and M. KREITMAN, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
33. MALPICA, J. M., J. M. VASSALLO, A. FRIAS and F. FUENTE-BOL, 1987 On recombination among In(2L)t, α-Gpdh and Adh in Drosophila melanogaster. Genetics 115: 141-142.
34. MAYNARD-SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favorable gene. Genet. Res. 23: 23-35.
35. MICHALAKIS, Y., and M. VEUILLE, 1996 Length variation of CAG/ CAA trinucleotide repeats in natural populations of Drosophila melanogaster and its relation to the recombination rate. Genetics 143: 1713-1725.
36. MORIYAMA, E. N., and J. F. POWELL, 1996 Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13: 261-277.
37. NEI, M., 1987 Molecular Evolutionary Genetics. Columbia University Press, New York.
38. NEI, M., and T. GOJOBORI, 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
39. POPADIC, A., D. POPADIC and W. W. ANDERSON, 1995 Interchromosomal exchange of genetic information between gene arrangements on the third chromosome of Drosophila pseudoobscura. Mol. Biol. Evol. 12: 938-943.
40. RAYMOND, M., and F. ROUSSET, 1995 GENEPOP version 1.2: a population genetics software for exact test and ecumenicism.J. Hered. 86: 248-249.
41. ROZAS, J., and M. AGUADÉ, 1990 Evidence of genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura. Genetics 126: 417-426.
42. ROZAS, J., and M. AGUADÉ, 1993 Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proc. Natl. Acad. Sci. USA 90: 8083-8087.
43. ROZAS, J., and F. R. ROZAS, 1997 DNAsp version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Appl. Biosci. 13: 307-311.
44. SCHWEISGUTH, F., 1995 Suppressor of Hairless is required for signal reception during lateral inhibition in the Drosophila pupal notum. Development 121: 1-10.
45. SCHWEISGUTH, F., and J. W. POSAKONY, 1992 Suppressor of Hairless, the Drosophila homologue of the mouse recombination signal-binding protein gene, controls sensory organ cell fates. Cell 69: 1199-1212.
46. SLATKIN, M., and T. WIEHE, 1998 Genetic hitchhiking in a subdivided population. Genet. Res. 71: 155-160.
47. STEPHAN, W., and C. H. LANGLEY, 1989 Molecular genetic variation in the centromeric region of the X chromosome in three Drosophila ananassae populations. I. Contrasts between the vermilion and forked loci. Genetics 121: 89-99.
48. STROBECK, C., 1983 Expected linkage disequilibrium for a neutral locus linked to a chromosomal arrangement. Genetics 103: 545-555.
49. TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
50. VEUILLE, M., V. BENASSI, S. AULARD and F. DEPAULIS, 1998 Allele-specific population structure of Drosophila melanogaster Alcohol dehydrogenase at the molecular level. Genetics 149: 971-981.
51. WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
52. WRIGHT, S., and TH. DOBZHANSKY, 1946 Genetics of natural populations. XII. Experimental reproduction of the changes caused by natural selection in certain populations of Drosophila pseudo-obscura. Genetics 31: 125-156.