Linkage analysis and loss of heterozygosity for chromosome arm Ip in familial breast cancer

Genes Chromosomes and Cancer

Volumn 25, Issue 4, 1999, Pages 354-361

  Millikan, Robert C ^a   Ingles, Sue A ^b   Diep, Anh T ^b   Xue, Shanyan ^b   Zhou, Nianmin ^b   Florentine, Barbara D ^c   Sparkes, Robert S ^d   Haile, Robert W ^b  

^a IL   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER;

ARTICLE; BREAST CANCER; CHROMOSOME ARM; FAMILIAL DISEASE; GENE LOCUS; GENETIC LINKAGE; GENETIC SUSCEPTIBILITY; HETEROZYGOSITY LOSS; HUMAN; PATHOGENESIS; PRIORITY JOURNAL;

BREAST NEOPLASMS; CHROMOSOMES, HUMAN, PAIR 1; FEMALE; GENETIC MARKERS; HUMANS; LINKAGE (GENETICS); LOSS OF HETEROZYGOSITY;

EID: 0032812324     PISSN: 10452257     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1098-2264(199908)25:4<354::AID-GCC7>3.0.CO;2-O     Document Type: Article

References (54)

1. Bieche I, Champeme M, Merlo G. 1990. Loss of heterozygosity of the L-myc oncogene in human breast tumors. Hum Genet 85:101-105.
2. Bleche I, Champeme M, Matifas F, Cropp C, Callahan R, Lidereau R. 1993. Two distinct regions involved in 1p deletion in human primary breast cancer. Cancer Res 53:1990-1994.
3. Bieche I, Champeme M, Lidereau R. 1994. A tumor suppressor gene on chromosome 1p32-pter controls the amplification of myc family genes in breast cancer. Cancer Res 54:4274-4276.
4. Bieche J, Lidereau R, 1995. Genetic alterations in breast cancer. Genes Chromosomes Cancer 14:227-251.
5. Borg A, Zhang Q, Olsson H, Wenngren E. 1992. Chromosome 1 alterations in breast cancer: allelic loss on 1p and 1q is related to lymphogenic metastases and poor prognosis. Genes Chromosomes Cancer 5:311-320.
6. Callahan R, Cropp C, Merlo G, Liscia D, Cappa A, Lidereau R. 1992. Somatic mutations and human breast cancer. Cancer 69(suppl 6):1582-1588.
7. Claus E, Risch N, Thompson W. 1991. Genetic analysis of breast cancer in the cancer and steroid hormone study. Am J Hum Genet 48:232-242.
8. Collins N, McManus R, Wooster R, Mangion J, Seal S, Lakhani S, Ormiston W, Daly P, Ford D, Easton D, Stratton M. 1995. Consistent loss of the wild type allele in breast cancers from a family linked to the BRCA2 gene on chromosome 13q12-13. Oncogene 10:1673-1675.
9. Cornelis R, Neuhausen S, Johansson O, Arason A, Kelsell D, Pnder B, Tonin P, Hamann U, Lindblom A, Lalle P, Longy M, Olah E, Scherneck S, Bignon Y-J, Sobol H, Chang-Claude J, Larsson C, Spurr N, Borg A, Barkardottir R, Narod S, Devilee P, the Breast Cancer Linkage Consortium. 1995. High allele loss rates at 17q12-q21 in breast and ovarian tumors from BRCA1-I inked families. Genes Chromosomes Cancer 13:203-210.
10. Cortessis V, Ingles S, Millikan R, Diep A, Gatti R, Richardson L, Thompson W, Paganini-Hill A, Sparkes R, Haile R. 1993. Linkage analysis of DRD2, a marker linked to the ataxia-telangiectasia gene, in 64 families with premenopausal bilateral breast cancer. Cancer Res 53:5083-5086.
11. Devilee P, van Vliet M, Bardoel A, Kievits T, Kuipers Dijkshorrn N, Pearson P, Cornelisse C. 1991. Frequent somatic imbalance of marker alleles for chromosome 1 in human primary breast cancer. Cancer Res 51:1020-1025.
12. Dracopoli N, Harnett P, Bale S, Stanger B, Tucker M, Housman D, Kefford R. 1989. Loss of alleles from the distal short arm of chromosome 1 occurs late in melanoma tumor progression. Proc Natl Acad Sci USA 88:4614-4618.
13. Engelstein M, Hudson T, Lane J, Lee M, Leverone B, Landes G, Peltonen L, Weber J, Dracopoli N. 1993. A PCR-based linkage map of human chromosome 1. Genomics 15:251-258.
14. Ferrell R, Anderson D, Chidambaram A, Marino T, Badzioch M. 1989. A genetic linkage study of familial breast-ovarian cancer. Cancer Genet Cytogenet 38:241-248.
15. Ford D, Easton E, Stratton M, Narod S, Goldgar D, Devilee P, Bishop D, Weber B, Lenoir G, Chang-Claude J, Sobol H, Teare M, Struewing J, Arason A, Scherneck S, Peto J, Rebbeck T, Tonin P, Neuhausen S, Barkardottir R, Eyfjord J, Lunch H, Ponder B, Gayther S, Birch J, Lindblom A, Stoppa-Lyonnet D, Bignon Y, Borg A, Hamann U, Haites N, Scott R, Maugard C, Vasen H, Seitz S, Cannon-Albright L, Schofield A, Zelada-Hedman, the Breast Cancer Linkage Consortium. 1998. Genetic heterogeneity and penetrance analysis of the BRCA1 and BRCA2 genes in breast cancer families. Am J Hum Genet 62:676-689.
16. Freimer N, Sandkuijl L, Blower S. 1993. Incorrect specification of marker allelic frequencies: effects on linkage analysis. Am J Hum Genet 52:1102-1110.
17. Futreal P, Liu Q, Shattuck-Eidens D, Cochran C, Harshmn K, Tavtigian S, Bennett L, Haugen-Strano A, Swensen J, Miki Y, Eddington K, McClure M, Frye C, Weaver-Feldhaus J, Ding W, Gholami Z, Soderkvist P, Terry L, Jhanwar S, Berchuck A, Iglehart D, Marks J, Ballinger D, Barrett J, Skolnick M, Kamb A, Wiseman R. 1994. BRCA1 mutations in primary breast and ovarian carcinomas. Science 266:120-125.
18. Genuardi M, Tsihira H, Anderson D, Saunders G. 1989. Distal deletion of chromosome 1p in ductal carcinoma of the breast. Am J Hum Genet 45:73-82.
19. Goldstein A, Haile R, Hodge S, Paganini-Hill A, Spence A. 1989. Possible heterogeneity in the segregation pattern of breast cancer in families with bilateral breast cancer. Genetic Epidem 5:121-133.
20. Goldstein A, Dracopoli N, Ho E, Fraser M, Kearns K, Bale S, McBRide W, Clark W, Tucker M. 1993. Further evidence for cutaneous malignant melanoma-dysplastic nevus (CMM/DN) on chromosome 1p, and evidence for heterogeneity. Am J Hum Genet 52:537-550.
21. Greer C, Wheeler C, Manos M. 1994. Sample preparation and PCR amplification from paraffin-embedded tissues. In Innis M, Gelfand D, Sninsky J, White T, editors. PCR protocols: a guide to methods and applications. San Diego: Academic Press.
22. Gyapay G, Morissette J, Vignal A, Dib C, Fizames C, Millasseau P, Marc S, Bernard G, Lathrop M, Weissenbach J. 1994. The 1993-94 Genethon human genetic linkage map. Nat Genet 7:246-255.
23. Haile R, Cortessis V, Millikan R, Ingles S, Sparkes R. 1993. A linkage analysis of D17S74 (CMM86) in thirty-five families with premenopausal bilateral breast cancer. Cancer Res 53:212-214.
24. Hall J, Zuppan P, Anderson L, Huey B, Carter C, King M-C. 1989. Oncogenes and human breast cancer. Am J Hum Genet 44:577-584.
25. Hall J, Friedman L, Guenther C, Lee M, Weber J, Black D, King M-C. 1992. Closing in on a breast cancer gene on chromosome 17q. Am J Hum Genet 50:1235-1242.
26. Hoggard N, Brintnell B, Howell A, Weissenach J, Varley J. 1995. Allelic imbalance on chromosome 1 in breast cancer. II. Microsatellite repeat analysis. Genes Chromosomes Cancer 12:24-31.
27. Kaghad M, Bonnet H, Yand A, Creancier L, Ciscan J-C, Valent A, Minty A, Chalon P, Lelias J-M, Dumant S, Ferrara P, McKeon F, Caput D. 1997. Monoallelically expressed gene related to p53 at 1p36, a region frequently deleted in neuroblastoma and other human cancers. Cell 90:809-819.
28. Kelsell D, Spurr N, Barnes B, Gusterson B, Bishop D. 1996. Combined loss of BRCA1/BRCA2 in grade 3 breast carcinomas. Lancet 347:1554-1555.
29. Kerangueven F, Essioux L, Dib A, Noguchi T, Allione R, Geneix J, Longy M, Liderasu R, Sidinger R, Pebusque M-J, Jacquemier J, Bonaiti-Pellie C, Sobol H, Birnbaum D. 1995. Loss of heterozygosity and linkage analysis in breast carcinoma: indication for a putative third susceptibility gene on the short arm of chromosome 8. Oncogene 10:1023-1026.
30. King M-C, Go R, Elston R, Lunch H, Pertrakis N. 1980. Allele increasing susceptibility to human breast cancer may be linked to the glutamine-pyruvate transaminase locus. Science 208:406-408.
31. Lange K, Weeks D, Boehnke M. 1988. Programs for pedigree analysis: MENDEL, FISHER, and dGENE. Genetic Epidem 5:471-472.
32. Miki Y, Swensen J, Shattuck-Eidens D, Futreal P, Harshmann K, Tavtigian S, Liu Q, Cochran C, Bennett M, Ding W, Bell R, Rosenthal J, Hussey C, Tran T, McClure M, Frye C, Hattier T, Phelps R, Haugen-Strano A, Katcher H, Yakumo K, Gholami Z, Shaffer D, Stone S, Bayer S, Wray C, Bodgen R, Dayananth P, Ward J, Tonin P, Narod S, Bristow P, Norris F, Helvering L, Morrison P, Rosteck P, Lai M, Barrett J, Lewis C, Neuhausen S, Cannon-Albright L, Godlgar D, Wiseman R, Kamb A, Skolnick M. 1994. A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1. Science 266:66-71.
33. Nagai H, Negrini M, Carter S, Gillum D, Rosenberg A, Schwartz G, Croce C. 1995. Detection and cloning of a common region of loss of heterozygosity at chromosome 1p in breast cancer. Cancer Res 55:1752-1757.
34. Narod S, Feunteun J, Lynch H, Watson P, Conway T, Lynch J, Lenoir G. 1991. Familial breast-ovarian cancer locus on chromosome 17q12-q23. Lancet 338:82-83.
35. Neuhausen S, Marshall C. 1994. Loss of heterozygosity in familial tumors from three BRCA1-linked kindreds. Cancer Res 54:6069-6072.
36. Newman B, Austin M, Lee M, King M-C. 1988. Inheritance of human breast cancer: evidence for autosomal dominant transmission in high-risk families. Proc Natl Acad Sci USA 85:3044-3048.
37. Ott J. 1983. Linkage analysis and family classification under heterogeneity. Ann Hum Genet 47:311-320.
38. Rohde K, Teare M, Scherneck S, Koref M. 1995. A program using loss-of-constitutional-heterozygosity data to ascertain the location of predisposing genes in cancer families. Hum Hered 45:337-345.
39. Rosner B. 1990. Fundamentals of Biostatistics. Boston: PWS-Kent.
40. Sambrook J, Maniatis T, Fritsch F. 1988. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
41. Seitz S, Rohde K, Bender E, Nothnagel A, Pidde H, Ullrich O-M, El-Zehairy A, Hansch W, Jandrig B, Kolble K, Schlag P, Scherneck S. 1997a. Deletion mapping and linkage analysis provide strong evidence for the involvement of the human chromosome region 8p12-22 in breast carcinogenesis. Br J Cancer 76:983-991.
42. Seitz S, Rohde K, Bender E, Nothnagel A, Kolble K, Schlag P, Scherneck S. 1997b. Strong indication for a breast cancer susceptibility gene on chromosome 8p12-p22: linkage analysis in German breast cancer families. Oncogene 14:741-743.
43. Shattuck-Eidens D, McClure M, Simard J, Labrie F, Narod S, Couch F, Weber B, Castilla L, Brody L, Friedman L, Ostermeyer E, Szabo C, King M-C, Jhanwar S, Offit K, Norton L, Gilewski T, Lubin M, Osborne M, Black D, Boyd M, Steel M, Ingles S, Haile R, Lindblom A, Borg A, Bishop D, Solomon E, Tadice P, Spatti G, Gayther S, Ponder B, Warren W, Stratton M, Liu Q, Fujimaur F, Lewis C, Skolnick M, Goldgar D. 1995. A collaborative survey of 80 mutations in the BRCA1 breast and ovarian cancer susceptibility gene: implications for presymptomatic testing and screening. J Am Med Assoc 273:535-541.
44. Skolnick M, Thompson E, Bishop D, Cannon L. 1984. Possible linkage of a breast cancer-susceptibility locus to the ABO locus: sensitivity of LOD scores to a single new recombinant observation. Genet Epidemiol 1:363-373.
45. Skolnick M, Cannon-Albright L. 1992. Genetic predisposition to breast cancer. Cancer 70:1747-1754.
46. Sulman E, Tang X, Allen C, Biegel J, Pleaseure D, Brodeur G, Ikegaki N. 1997. ECK, a human EPH-related gene, maps to 1p36.1, a common region of alteration in human cancers. Genomics 40:371-374.
47. Teare M, Rohde K, Koref M. 1994. The use of loss of constitutional heterozygosity to ascertain the location of predisposing genes in cancer families. J Med Genet 31:448-452.
48. Tirkkonen M, Johannsson O, Agnarsson A, Olsson H, Ingvarsson S, Karhu R, Tanner M, Isola J, Barjardottir R, Borg A, Kallioniemi O-P. 1997. Distinct somatic genetic changes associated with tumor progression in carriers of BRCA1 and KRCA2 germ-line mutations. Cancer Res 57:1222-1227.
49. Tsukamoto K, Ito N, Yoshimoto M, Kasumi F, Akiyama F, Sakamoto G, Nakamura Y, Emi M. 1998. Allelic loss on chromosome 1p is associated with progression and lymph node metastasis of primary breast carcinoma. Cancer 82:317-322.
50. Weith A, Martinsson T, Cziepluch C, Bruderlein S, Amler L, Berthold F, Schwab M. 1989. Neuroblastoma consensus deletion maps to 1p36.1-2. Genes Chromosomes Cancer 1:159-166.
51. Weith A, Brodeur G, Bruns G, Matise T, Mischke D, Nizetic D, Seldin M, van Roy N, Vance J. 1996. Report of the Second International Workshop on Human Chromosome 1 mapping 1995. Cancer Genet Cytogenet 72:113-154.
52. Wooster R, Neuhausen S, Mangion J, Quirk Y, Ford D, Collins N, Nguyen K, Seal S, Tran T, Averill C, Fields P, Marshall G, Narod S, Lenoir G, Lunch H, Feunteun J, Devilee P, Cornelisse C, Menko F, Daly P, Ormiston W, McManus R, Pye C, Lewis C, Cannon-Albright L, Peto J, Ponder B, Skolnick M, Easton D, Goldgar D, Stratton M. 1994. Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12-13. Science 265:2088-2090.
53. Wright D, Manos M. 1990. Sample preparation from paraffin-embedded tissues. In Innis M, Gelfand D, Sninsky J, White T, editors. PCR protocols: a guide to methods and applications. San Diego: Academic Press.
54. Yeh S-H, Chen P-J, Chen H-L, Lai M-Y, Wang C-C, Chen D-S. 1994. Frequent genetic alterations at the distal region of chromosome 1p in human hepatocellular carcinomas. Cancer Res 54:4188-4192.