A radiation hybrid map of the RN region in pigs demonstrates conserved gene order compared with the human and mouse genomes

Mammalian Genome

Volumn 10, Issue 6, 1999, Pages 565-568

  Robic, Annie ^a   Seroude, Virginie ^a   Jeon, Jin Tae ^b   Yerle, Martine ^a   Wasungu, Luc ^a   Andersson, Leif ^b   Gellin, Joël ^a   Milan, Denis ^a  

^a CEMAGREF   (France)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOGEN; MICROSATELLITE DNA;

ARTICLE; CHROMOSOME 15Q; CHROMOSOME 2Q; GENE MAPPING; GENE ORDER; GENETIC CONSERVATION; GENETIC LINKAGE; HUMAN; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; SWINE;

ANIMALS; CHROMOSOMES, HUMAN, PAIR 2; GENETIC MARKERS; GENOME, HUMAN; HUMANS; HYBRID CELLS; LINKAGE (GENETICS); MICE; PHYSICAL CHROMOSOME MAPPING; SOFTWARE; SPECIES SPECIFICITY; SWINE;

MAMMALIA; RODENTIA; SUIDAE; SUS SCROFA;

EID: 0032797067     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s003359901045     Document Type: Article

References (34)

1. Alexander LJ, Rohrer GA, Beattie CR (1996) Cloning and characterisation of 414 polymorphic porcine microsatellites. Anim Genet 27, 137-148
2. Archibald AL, Brown JF, Couperwhite S, Mc Queen HA, Nicholson D et al. (1995) The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm Genome 6, 157-175
3. Bochnke M, Lange K, Cox DR (1991) Statistical methods for multipoint radiation hybrid mapping. Am J Hum Genet 49, 1174-1188
4. Budowle B, Chakraborty R, Giusti AM, Eisenberg AJ, Allens RC (1991) Analysis of the VNTR locus DIS80 by the PCR followed by high resolution PAGE. Am J Hum Genet 48, 137-144
5. Carver EA, Stubbs L (1997). Zooming in on the human-mouse comparative map: genome conservation re-examined on a high-resolution scale. Genome Res 7, 1123-1137
6. Chaubert P, Bautista D, Benhattar J (1993). An improved method for rapid screening of DNA mutations by nonradioactive Single-Strand Conformation Polymorphism procedure. Biotechniques 15, 586
7. Don RH, Cox PT, Wainwright BJ, Baker K, Mattick JS (1991) Touch down PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res 19, 4008
8. Fridolfsson AK, Hori T, Wintero AK, Fredholm M, Yerle M et al. (1997) Expansion of the pig comparative map by expressed sequenced tags (EST) mapping. Mamm Genome 8, 907-912
9. GeneMap 98 :Consortium of genome centres, Genethon, Sanger, SHGC, WICGR, WTCHG, EBI, NCBI. Web URL: http://www.ncbi.n1m.nih. gov/genemap98
10. Genome Data Base (GDB). The Human genome Data Base Project, Johns Hopkins University, Baltimore, Md. World-Wide Web URL: http:// gdbwww.gdb.org/
11. Goureau A, Yerle M, Schmitz A, Riquet J, Milan D et al. (1996) Human and porcine correspondences of chromosome segments using bidirectional chromosome painting. Genomics 36, 252-262
12. Gyapay G, Schmitt K, Fizames C, Jones H, Vega-Czarny N et al. (1996) A radiation hybrid map of the human genome. Hum Mol Genet 5, 339-346
13. INRA Toulouse, Institut National de la Recherche Agronomique: Web URL http://www.toulouse.inra.fr/lgc/pig/compare/compare.htm (Correspondences between human and pig chromosomal segments) and Web URL http://www.toulouse.inra.fr/lgc/pig/RH/IMpRH.htm (Description of the ImpRH panel)
14. Lahbib-Mansais Y, Dalias G, Milan D, Yerle M, Robic A et al. (1999) A successful strategy for comparative mapping using human ESTs: 65 new regional assignments in the pig. Mamm Genome 10, 145-153
15. Le Roy P, Naveau J, Elsen JM, Sellier P (1990) Evidence for a new major gene influencing meat quality in pigs. Genet Res 55, 33-40
16. Lunetta KL, Boehnke M (1994) Multipoint radiation hybrid mapping: Comparison of methods, sample size requirements, and optimal study characteristics. Genomics 21, 92-103
17. Lyons LA, Laughlin TF, Copeland NG, Jenkins NA, Womack JE et al. (1997) Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genome. Nat Genet 15, 47-56
18. Mariani P, Lundstrom K, Gustafsson U, Enfalt AC, Juneja RK, Andersson L (1996) A major locus (RN) affecting muscle glycogen content is located on pig chromosome 15. Mamm Genome 7, 52-54
19. Marklund L, Johansson-Moller M, Hoyheim B, Davies W, Fredholm M et al. (1996) A comprehensive linkage map of the pig based on wild pig-LargeWhite intercross. Anim Genet 27, 255-269
20. Milan D, Woloszyn N, Yerle M, Le Roy P, Bonnet M et al. (1996a) Accurate mapping of the acid meat RN gene on genetic and physical maps of pig chromosome 15. Mamm Genome 7, 47-51
21. Milan D, Woloszyn N, Giteau M, Navas A, Yerle M et al. (1996b) Toward the identification of RN gene involved in meat quality in pigs. Anim Genet 27 (Suppl 2), 114
22. Mouse Genome Database (MGD): Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, M. USA. http://www.informatics.jax.org/
23. Naveau J (1986) Contribution a l'étude du déterminisme génétique de la qualité de viande porcine. Héritabilité du Rendement Technologique Napole. J Rech Porcine Fr 18,265-276
24. Rohrer GA, Alexander LJ, Keele JW, Smith TP, Beattie CW (1994) A microsatellite linkage map of the porcine genome. Genetics 136, 231-245
25. Rohrer GA, Alexander LJ, Hu Z, Smith TP, Keele JW et al. (1996) A comprehensive map of the porcine genome. Genome Res 6, 371-391
26. Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G et al. (1996) A gene map of the human genome. Science 274, 540-546
27. Sonstegard TS, Rohrer, Smith TPL (1998) Myostatin maps to porcine chromosome 15 by linkage and physical analyses. Anim Genet 29, 19-22
28. Stanford Human Genome Center: Web URL http://www-shgc.stanford. edu/RH/index.html
29. Stewart EA, McKusick KB, Aggarwal A, Bajorek E, Brady S et al. (1997) An STS-based radiation hybrid map of the human genome. Genome Res 7, 422-433
30. Thomsen PD, Wintero AK, Fredholm M (1998) Chromosomal assignments of 19 porcine cDNA sequences by FISH. Mamm Genome 9, 394-396
31. Törnsten A, Jeon JT, Alexander LJ, Andersson L, Chowdhary BP (1998) Precise localization of the RN gene in pigs: physical ordering of six YACs from the RN region. Anim Genet 29, 319-321
32. Walter MA, Spillet DJ, Thomas P, Weissenbach J, Goodfellow PN (1994) A method for constructing radiation hybrid maps of whole genomes. Nat Genet 7, 22-28
33. Yerle M, Lahbib-Mansuis Y, Pinton P, Robic A, Goureau A et al. (1997) The cytogenetic map of the domestic pig (Sus scrofa domestica). Mamm Genome 8, 592-607
34. Yerle M, Pinton P, Robic A, Alfonso A, Palvadeau Y et al. (1998) Construction of a whole genome radiation hybrid panel for high resolution gene mapping in pigs. Cytogenet Cell Genet, 82, 182-188