Citromicrobium bathyomarinum, a novel aerobic bacterium isolated from deep-sea hydrothermal vent plume waters that contains photosynthetic pigment- protein complexes

Journal of Bacteriology

Volumn 181, Issue 15, 1999, Pages 4517-4525

  Yurkov, Vladimir V ^a,c   Krieger, Steven ^a   Stackebrandt, Erko ^b   Beatty, J Thomas ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^c UNIVERSITY OF MANITOBA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

PIGMENT; PROTEIN;

AEROBIC BACTERIUM; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CITROMICROBIUM BATHYOMARINUM; DNA DETERMINATION; DNA SEQUENCE; ELECTRON MICROSCOPY; HEAT TOLERANCE; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLUME; PRIORITY JOURNAL; SEA;

BACTERIA (MICROORGANISMS); BLASTOMONAS; CITROMICROBIUM BATHYOMARINUM; ERYTHROBACTER; ERYTHROMICROBIUM; ERYTHROMONAS; NEGIBACTERIA; PORPHYROBACTER; PROTEOBACTERIA;

EID: 0032793967     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.15.4517-4525.1999     Document Type: Article

References (37)

1. Arata, H., Y. Serikawa, and K. I. Takamiya. 1988. Trimethylamine-N-oxide respiration by aerobic photosynthetic bacterium, Erythrobacter sp. OCh114. J. Biochem. 103:1011-1015.
2. Brosius, J., M. L. Palmer, P. J. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of the 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
3. Cashion, P., M. A. Holder-Franklin, J. McCully, and M. Franklin. 1977. A rapid method for the base ratio determination of bacterial DNA. Anal. Biochem. 81:461-466.
4. Clayton, R. K. 1966. Spectroscopic analysis of bacteriochlorophyll in vivo and in vitro. Photochem. Photobiol. 5:669-677.
5. Drews, G. 1983. Mikrobiologisches Praktikum. Springer-Verlag, Berlin, Germany.
6. Felsenstein, J. 1993. PHYLIP (phylogenetic inference package) version 3.5.1. Department of Genetics, University of Washington, Seattle.
7. Fuerst, J. A., J. A. Hawkins, A. Holmes, L. I. Sly, C. J. Moore, and E. Stackebrandt. 1993. Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater. Int. J. Syst. Bacteriol. 43:125-134.
8. Gerhardt, P., R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg, and G. B. Phillips (ed.). 1981. Manual of methods for general bacteriology. American Society for Microbiology, Washington, D.C.
9. Gregersen, T. 1978. Rapid method for distinction of gram-negative from gram-positive bacteria. Eur. J. Appl. Microbiol. Biotechnol, 5:123-127.
10. Hanada, S., Y. Kawase, A. Hiraishi, S. Takaichi, K. Matsuura, K. Shimada, and K. V. P. Nagashima. 1997. Porphyrobacter tepidarius sp. nov., a moderately thermophilic aerobic photosynthetic bacterium isolated from a hot spring. Int. J. Syst. Bacteriol. 47:408-413.
11. Kellenberger, E., A. Ryter, and J. Sechaud. 1958. Electron microscope study of DNA-containing plasms. J. Biophys. Biochem. Cytol. 4:671-678.
12. LITE and Workshop Participants. 1994. Light in thermal environments, p. 44. In C. L. Van Dover, J. R. Cann, C. Cavanaugh, S. Chamberlain, J. R. Delaney, D. Janecky, J. Imhoff, and A. Tyson (ed.), RIDGE program report. Oceanographic Institution, Woods Hole, Mass.
13. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
14. Maidak, B. L., N. Larsen, M. J. McCaughey, R. Overbeck, G. J. Olsen, K. Fogel, J. Blandy, and C. R. Woese. 1994. The ribosomal database project. Nucleic Acids Res. 22:3485-3487.
15. Mesbah, M., U. Premachandran, and B. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39:159-167.
16. Nisbet, E. G., J. R. Cann, and C. L. van Dover. 1995. Origins of photosynthesis. Nature (London) 373:479-480.
17. Rainey, F. A., N. Ward-Rainey, R. M. Kroppenstedt, and E. Stackebrandt. 1996. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol. 46:1088-1092.
18. Shiba, T. 1991. Roseobacter litoralis gen. nov., sp. nov. and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst. Appl. Microbiol. 14:140-145.
19. Shiba, T., Y. Shioi, K. I. Takamiya, D. C. Sutton, and C. R. Wilkinson. 1991. Distribution and physiology of aerobic bacteria containing bacteriochlorophyll a on the East and West coasts of Australia. Appl. Environ. Microbiol. 57:295-300.
20. Shiba, T., and U. Simidu. 1982. Erythrobacter longus gen. nov., sp. nov., an aerobic bacterium which contains bacteriochlorophyll a. Int. J. Syst. Bacteriol. 32:211-217.
21. Shiba, T., U. Simidu, and N. Taga. 1979. Distribution of aerobic bacteria which contain bacteriochlorophyll a. Appl. Environ. Microbiol. 38:43-45.
22. Strunk, O., and W. Ludwig. 1995. ARB - a software environment for sequence data. Department of Microbiology, Technical University of Munich, Munich, Germany.
23. Van Dover, C. L., J. R. Cann, C. Cavanaugh, S. Chamberlain, J. R. Delaney, D. Janecky, J. Imhoff, J. A. Tyson, and the LITE Workshop Participants. 1994. Light at deep sea hydrothermal vents. EOS Trans. Am. Geophys. Union 75:44-45.
24. Van Dover, C. L., G. T. Reynolds, A. D. Chave, and J. A. Tyson. 1996. Light at deep sea hydrothermal vents. Geophys. Res. Lett. 23:2049-2052.
25. Wakao, N., T. Shiba, A. Hiraishi, M. Ito, and Y. Sakurai. 1993. Distribution of bacteriochlorophyll a in species of the genus Acidiphilium. Curr. Microbiol. 27:277-279.
26. Yurkov, V., and J. T. Beatty. 1998. Isolation of aerobic anoxygenic photosynthetic bacteria from Black Smoker plume waters of the Juan de Fuca Ridge in the Pacific Ocean. Appl. Environ. Microbiol. 64:337-341.
27. Yurkov, V., N. Gad'on, A. Angerhofer, and G. Drews. 1994. Light-harvesting complexes of aerobic bacteriochlorophyll-containing bacteria Roseococcus thiosulfatophilus, RB3 and Erythromicrobium ramosum, E5 and the transfer of excitation energy from carotenoids to bacteriochlorophyll. Z. Naturforsch. Teil C 49:579-586. (In English.)
28. Yurkov, V., N. Gad'on, and G. Drews. 1993. The major part of polar carotenoids of the aerobic bacteria Roseococcus thiosulfatophilus, RB3 and Erythromicrobium ramosum, E5 is not bound to the bacteriochlorophyll a complexes of the photosynthetic apparatus. Arch. Microbiol. 160:372-376.
29. Yurkov, V., and V. M. Gorlenko. 1990. Erythrobacter sibiricus sp. nov., a new freshwater aerobic bacterial species containing bacteriochlorophyll a. Microbiology (New York) 59:85-89.
30. Yurkov, V., and V. M. Gorlenko. 1992. A new genus of freshwater aerobic, bacteriochlorophyll a-containing bacteria, Roseococcus gen. nov. Microbiology (New York) 60:628-632.
31. Yurkov, V., and V. M. Gorlenko. 1993. New species of aerobic bacteria from the genus Erythromicrobium containing bacteriochlorophyll a. Microbiology (New York) 61:163-168.
32. Yurkov, V., V. M. Gorlenko, and E. I. Kompantseva. 1992. A new type of freshwater aerobic orange-coloured bacterium containing bacteriochlorophyll a, Erythromicrobium gen. nov. Microbiology (New York) 61:169-172.
33. Yurkov, V., J. Jappe, and A. Vermeglio. 1996. Tellurite resistance and reduction by obligately aerobic photosynthetic bacteria. Appl. Environ. Microbiol. 62:4195-4198.
34. Yurkov, V., E. Stackebrandt, O. Buss, A. Vermeglio, V. M. Gorlenko, and J. T. Beatty. 1997. Reorganization of the genus Erythromicrobium: description of "Erythromicrobium sibiricum" as Sandaracinobacter sibiricus gen. nov., sp. nov., and of "Erythromicrobium ursincola" as Erythromonas ursincola, gen. nov., sp. nov. Int. J. Syst. Bacteriol. 47:1172-1178.
35. Yurkov, V., E. Stackebrandt, A. Holmes, J. A. Fuerst, P. Hugenholtz, J. Golecki, N. Gad'on, V. M. Gorlenko, E. I. Kompantseva, and G. Drews. 1994. Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. Int. J. Syst. Bacteriol. 44:427-434.
36. Yurkov, V., and H. van Gemerden. 1993. Abundance and salt tolerance of obligately aerobic, phototrophic bacteria in a microbial mat. Neth. J. Sea Res. 31:57-62.
37. Yurkov, V. V., and J. T. Beatty. 1998. Aerobic anoxygenic phototrophic bacteria. Microbiol. Mol. Biol. Rev. 62:695-724.