Characterization of the gene encoding the apoprotein of phytochrome B2 in tomato, and identification of molecular lesions in two mutant alleles

Molecular and General Genetics

Volumn 261, Issue 6, 1999, Pages 901-907

  Kerckhoffs, L H J ^a   Kelmenson, P M ^a   Schreuder, M E L ^b   Kendrick, C I ^b   Kendrick, R E ^b,c   Hanhart, C J ^b   Koornneef, M ^b   Pratt, L H ^a,c   Cordonnier Pratt, M M ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

Author keywords

Intron splicing; Photomorphogenic mutants; PHYB2; Phytochrome; Tomato

Indexed keywords

ANTHOCYANIN; APOPROTEIN; COMPLEMENTARY DNA; MESSENGER RNA; MUTANT PROTEIN; PHYTOCHROME; PLANT DNA;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; EXON; GENE STRUCTURE; INTRON; LIGHT; MUTANT; NONHUMAN; NORTHERN BLOTTING; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PLANT GROWTH; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; STOP CODON; TOMATO;

ALLELES; AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; DNA PRIMERS; DNA, COMPLEMENTARY; LYCOPERSICON ESCULENTUM; MUTAGENESIS; PHENOTYPE; PHOTORECEPTORS; PHYTOCHROME; PHYTOCHROME B; RNA SPLICING; TRANSCRIPTION FACTORS;

ARABIDOPSIS; EMBRYOPHYTA; LYCOPERSICON ESCULENTUM; MAGNOLIOPHYTA;

EID: 0032789196     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380051037     Document Type: Article

References (27)

1. Aukerman MJ, Hirschfeld M, Wester L, Weaver M, Clack T, Amasino RM, Sharrock RA (1997) A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing. Plant Cell 9:1317-1326
2. Brown JWS (1996) Arabidopsis intron mutations and pre-mRNA splicing. Plant J 10:771-780
3. Cherry JR, Hondred D, Walker JM, Keller JM, Hershey HP, Vierstra RD (1993) Carboxy-terminal deletion analysis of oat phytochrome A reveals the presence of separate domains required for structure and biological activity. Plant Cell 5:565-575
4. Clack T, Mathews S, Sharrock RA (1994) The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol Biol 25:413-427
5. Hauser BA, Cordonnier-Pratt M-M, Daniel-Vedele F, Pratt LH (1995) The phytochrome gene family in tomato includes a novel subfamily. Plant Mol Biol 29:1143-1155
6. Howe GT, Bucciaglia PA, Hackett WP, Furnier GR, Cordonnier-Pratt M-M, Gardner G (1998) Evidence that the phytochrome gene family in black cottonwood has one PHYA locus, two PHYB loci, but lacks members of the PHYC/F and PHYE subfamilies. Mol Biol Evol 15:160-175
7. Kendrick RE, Kronenberg GHM (eds) (1994) Photomorphogenesis in plants (2nd edn). Kluwer, Dordrecht
8. Kendrick RE, Kerckhoffs LHJ, Van Tuinen A, Koornneef M (1997) Photomorphogenic mutants of tomato. Plant Cell Environ 20:746-751
9. Kerckhoffs LHJ, Van Tuinen A, Hauser BA, Cordonnier-Pratt M-M, Nagatani A, Koornneef M, Pratt LH, Kendrick RE (1996) Molecular analysis of tri-mutant alleles in tomato indicates the Tri locus is the gene encoding the apoprotein of phytochrome B1. Planta 199:152-157
10. Kerckhoffs LHJ, Sengers MMT, Kendrick RE (1997a) Growth analysis of wild-type and photomorphogenic-mutant tomato plants. Physiol Plant 99:309-315
11. Kerckhoffs LHJ, Schreuder MEL, Van Tuinen A, Koornneef M, Kendrick RE (1997b) Phytochrome control of anthocyanin biosynthesis in tomato seedlings: analysis using photomorphogenic mutants. Photochem Photobiol 65:374-381
12. Lazarova GI, Kerckhoffs LHJ, Brandstädter J, Matsui M, Kendrick RE, Cordonnier-Pratt M-M, Pratt LH (1998a) Molecular analysis of PHYA in wild-type and phytochrome A-deficient mutants in tomato. Plant J 14:653-662
13. Lazarova GI, Kubota T, Frances S, Peters JL, Hughes MJG, Brandstädter J, Széll M, Matsui M, Kendrick RE, Cordonnier-Pratt M-M, Pratt LH (1998b) Characterization of tomato PHYB1 and identification of molecular defects in four mutant alleles. Plant Mol Biol 38:1137-1146
14. Mathews S, Sharrock RA (1997) Phytochrome gene diversity. Plant Cell Environ 20:666-671
15. Mathews S, Levin M, Sharrock RA (1995) Evolution of the phytochrome gene family and its utility for phylogenetic analysis of angiosperms. Ann Miss Bot Gard 82:296-321
16. Nagatani A, Chory J, Furuya M (1991) Phytochrome B is not detectable in the hy3 mutant of Arabidopsis, which is deficient in responding to end-of-day far-red light treatments. Plant Cell Physiol 32:1119-1122
17. Pratt LH, Cordonnier-Pratt M-M, Hauser BA, Caboche M (1995) Tomato contains two differentially expressed genes encoding B-type phytochromes, neither of which can be considered as an ortholog of Arabidopsis phytochrome B. Planta 197:203-206
18. Pratt LH, Cordonnier-Pratt M-M, Kelmenson PM, Lazarova GI, Alba RM (1997) The phytochrome family in tomato (Solanum lycopersicum L.). Plant Cell Environ 20: 672-677
19. Reed JW, Nagpal P, Poole DS, Furuya M, Chory J (1993) Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell 5:147-157
20. Sakamoto K, Nagatani A (1996) Nuclear localization activity of phytochrome B. Plant J 10:859-868
21. Sharrock RA, Quail PH (1989) Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution and differential expression of a plant regulatory photoreceptor family. Genes Dev 3:1745-1757
22. Simpson GG, Filipowicz W (1996) Splicing of precursors to mRNA in higher plants: mechanism, regulation, and sub-nuclear organization of the spliceosomal machinery. Plant Mol Biol 32:1-41
23. Tatusov RL, Koonin EV, Lipman DJ (1997) A genomic perspective on protein families. Science 278:631-637
24. Terry MJ, Kendrick RE (1996) The aurea and yellow-green-2 mutants of tomato are deficient in phytochrome chromophore synthesis. J Biol Chem 271:21681-21686
25. Van Tuinen A, Kerckhoffs LHJ, Nagatani A, Kendrick RE, Koornneef M (1995a) Far-red light-insensitive, phytochrome A-deficient mutants of tomato. Mol Gen Genet 246:133-141
26. Van Tuinen A, Kerckhoffs LHJ, Nagatani A, Kendrick RE, Koornneef M (1995b) A temporarily red light-insensitive mutant of tomato lacks a light-stable, B-like phytochrome. Plant Physiol 108:939-947
27. Whitelam GC, Harberd NP (1994) Action and function of phytochrome family members revealed through the study of mutant and transgenic plants. Plant Cell Environ 17:615-625