The puff-specific RRM protein NonA is a single-stranded nucleic acid binding protein

Chromosoma

Volumn 108, Issue 3, 1999, Pages 162-172

  Reim, Ingolf ^b   Stanewsky, Ralf ^a,b   Saumweber, Harald ^b  

^a BRANDEIS UNIVERSITY   (United States)

^b HUMBOLDT UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID BINDING PROTEIN; RNA; SINGLE STRANDED DNA; SMALL NUCLEAR RIBONUCLEOPROTEIN;

ANIMAL TISSUE; ARTICLE; BINDING AFFINITY; CHROMATIN; CONSENSUS SEQUENCE; CONTROLLED STUDY; DROSOPHILA; IMMUNOPRECIPITATION; NONHUMAN; POINT MUTATION; POLYTENE CHROMOSOME; PROTEIN DNA BINDING; PROTEIN RNA BINDING;

ANIMALS; DROSOPHILA; DROSOPHILA PROTEINS; NUCLEAR PROTEINS; PROTEIN BINDING; RECOMBINANT PROTEINS; RNA; RNA-BINDING PROTEINS;

EID: 0032781884     PISSN: 00095915     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004120050365     Document Type: Article

References (36)

1. Ahmed AK, Schaffer SW, Wetlaufer DB (1975) Nonenzymatic reactivation of reduced bovine pancreatic ribonuclease by air oxidation and glutathione oxidoreduction buffers. J Biol Chem 250:8477-8482
2. Amero SA, Raychaudhuri G, Cass CL, van Venrooij WJ, Habets WJ, Krainer AR, Beyer AL (1992) Independent deposition of heterogeneous nuclear ribonucleoproteins and small nuclear ribonucleoprotein particles at sites of transcription. Proc Natl Acad Sci U S A 89:8409-8413
3. Amero SA, Matunis MJ, Matunis EL, Hockensmith JW, Raychaudhuri G, Beyer AL (1993) A unique ribonucleoprotein complex assembles preferentially on ecdysone-responsive sites in Drosophila melanogaster. Mol Cell Biol 13:5323-5330
4. Besser Hv, Schnabel P, Wieland C, Fritz E, Stanewsky R, Saumweber H (1990) The puff-specific protein Bj6, encoded by the gene no-on transient A, shows homology to RNA-binding proteins. Chromosoma 100:37-47
5. Burd CG, Dreyfuss G (1994) Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-621
6. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
7. Chase JW, Williams KR (1986) Single stranded DNA binding proteins required for DNA replication. Annu Rev Biochem 55:103-136
8. Deardorff JA, Sachs AB (1997) Differential effects of aromatic and charged residue substitutions in the RNA binding domains of the yeast poly(A)-binding protein. J Mol Biol 269:67-81
9. Frasch M, Saumweber H (1989) Two proteins from Drosophila nuclei are bound to chromatin and are detected in a series of puffs on polytene chromosomes. Chromosoma 97:272-281
10. Garfinkel MD, Pruitt RE, Meyerowitz EM (1983) DNA sequences, gene regulation and modular protein evolution in the Drosophila 68C glue gene cluster. J Mol Biol 168:765-789
11. Hoffman DE, Query CC, Golden, BL, White SW, Keene JD (1991) RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins. Proc Natl Acad Sci U S A 88:2495-2499
12. Jessen TH, Oubridge C, Teo CH, Pritchard C, Nagai K (1991) Identification of molecular contacts between the U1 A small nuclear ribonucleoprotein and U1 A RNA. EMBO J 10:3447-3456
13. Kellum R, Schedl P (1991) A position-effect assay for boundaries of higher order chromosomal domains. Cell 64:941-950
14. Kellum R, Schedl P (1992) A group of ses elements function as domain boundaries in an enhancer blocking assay. Mol Cell Biol 12:2424-2431
15. Kenan DJ, Query CC, Keene JD (1991) RNA recognition: towards identifying determinants of specificity. Trends Biochem Sci 16:214-220
16. Kidd S, Baylies MK, Gasic GP, Young MW (1989) Structure and distribution of the Notch protein in developing Drosophila. Genes Dev 3:1113-1129
17. Krämer A (1995) The biochemistry of pre-mRNA splicing. In: Lamond AI (ed) Pre-mRNA processing. R.G. Landes Company, Austin. Springer-Verlag New York, pp 35-64
18. Krumm A, Roth GE, Korge G (1985) Transformation of salivary gland secretion protein gene Sgs-4 in Drosophila: stage- and tissue-specific regulation, dosage compensation and position effect. Proc Natl Acad Sci U S A 82:5055-5059
19. Küpper H, Keller W, Kurz C, Forss S, Schaller H, Franze R, Strohmaier K, Marquad O, Zaslavsky VG, Hofschneider PH (1981) Cloning of cDNA of major antigen of foot and mouth disease virus and expression in E. coli. Nature 227:680-685
20. Nagai K, Oubridge C, Jessen TH, Li J, Evans PR (1990) Crystal structure of the RNA binding domain of the U1 small nuclear ribonucleoprotein A. Nature 348:515-520
21. Nagai K, Oubridge C, Ito N, Avis J, Evans P (1995) The RNP domain: a sequence-specific RNA-binding domain involved in processing and transport of RNA. Trends Biochem Sci 20: 235-240
22. Oubridge C, Ito N, Evans PR, Teo CH, Nagai K (1994) Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1 A spliceosomal protein complexed with an RNA hairpin. Nature 372:432-438
23. Platero JS, Hartnett T, Eissenberg JC (1995) Functional analysis of the chromodomain of HP1. EMBO J 14:3977-3986
24. Rastelli L, Chan CS, Pirrotta V (1993) Related chromosome binding sites for zeste, suppressors of zeste and Polycomb group proteins in Drosophila and their dependence on Enhancer of zeste function. EMBO J 12:1513-1522
25. Rendahl KG, Jones KR, Kulkarni SJ, Bagully SH, Hall JC (1992) The dissonance mutation at the no-on transient A locus of D. melanogaster: Genetic control of courtship song and visual behaviors by a protein with putative RNA-binding motifs. J Neurosci 12:390-407
26. Rendahl KG, Gaukhshteyn N, Wheeler DA, Fry TA, Hall JC (1996) Defects in courtship and vision caused by amino-acid substitutions in a putative RNA-binding protein encoded by the nonA gene of Drosophila. J Neurosci 16:1511-1522
27. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
28. Samuels ME, Bopp D, Colvin RA, Roscigno RF, Garcia-Blanco MA, Schedl P (1994) RNA binding by Sxl proteins in vitro and in vivo. Mol Cell Biol 15:4975-4990
29. Saumweber H, Korge G, Frasch M (1990) Two puff-specific proteins bind within the 2.5 kb upstream region of the Drosophila melanogaster Sgs-4 gene. Chromosoma 99:52-60
30. Stanewsky R, Rendahl KG, Dill M, Saumweber H (1993) Genetic and molecular analysis of the X-chromosomal region 14B17-14C4 in Drosophila melanogaster: loss of function in nonA, a nuclear protein common to many cell types, results in specific physiological and behavioral defects. Genetics 135:419-442
31. Stanewsky R, Fry TA, Reim I, Saumweber H, Hall JC (1996) Bioassaying putative RNA-binding motifs in a protein encoded by a gene that influences courtship and visually mediated behavior in Drosophila: in vitro mutagenesis of nonA. Genetics 143:259-275
32. Studier FW, Moffatt BA (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189:113-130
33. Swanson M (1995) Functions of nuclear pre-mRNA/mRNA binding proteins. In: Lamond AI (ed) Pre-mRNA processing. R.G. Landes Company, Austin, Springer-Verlag New York, pp 17-33
34. Thummel CS (1990) Puffs and gene regulation - molecular insights into the Drosophila ecdysone regulatory hierarchy. BioEssays 12:561-568
35. Valcárcel J, Singh R, Green MR (1995) Mechanisms of pre-mRNA splicing. In: Lamond AI (ed) Pre-mRNA processing. R.G. Landes Company, Austin, Springer-Verlag, New York, pp 97-112
36. Zink B, Paro R (1989) In vivo binding pattern of a trans-regulator of homeotic genes in Drosophila melanogaster. Nature 337:468-471