I-SceI endonuclease, a new tool for studying DNA double strand break repair mechanisms in Drosophila

Genetics

Volumn 152, Issue 3, 1999, Pages 1037-1044

  Bellaiche, Yohanns ^a   Mogila, Vladic ^a,c   Perrimon, Norbert ^a,b  

^a HARVARD MEDICAL SCHOOL   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c INSTITUTE OF GENE BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE I; DOUBLE STRANDED DNA; MITOCHONDRIAL ENZYME;

ARTICLE; DNA REPAIR; DNA STRAND BREAKAGE; DROSOPHILA; GENE DELETION; GERM LINE; MARKER GENE; NONHUMAN; PRIORITY JOURNAL;

ANIMALS; CROSSES, GENETIC; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA; DNA REPAIR; DROSOPHILA; FEMALE; GENES, REPORTER; MALE; MODELS, GENETIC; MOLECULAR BIOLOGY;

EID: 0032778677     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. ARAJ, H., and P. D. SMITH, 1996 Positional cloning of the Drosophila melanogaster mei-9 gene, the putative homolog of the Saccharomyces cerevisiae RAD1 gene. Mutat. Res. 364: 209-215.
2. ASHBURNER, M., 1989 Drosophila. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
3. BARDWELL, A. J., L. BARDWELL, A. E. TOMKINSON and E. C. FRIEDBERG, 1994 Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease. Science 265: 2082-2085.
4. BEALL, E. L., and D. C. RIO, 1996 Drosophila IRBP/Ku p70 corresponds to the mutagen-sensitive mus309 gene and is involved in P-element excision in vivo. Genes Dev. 10: 921-933.
5. BEALL, E. L., and D. C. RIO, 1997 Drosophila P-element transposase is a novel site-specific endonuclease. Genes Dev. 11: 2137-2151.
6. BEALL, E. L., A. ADMON and D. C. RIO, 1994 A Drosophila protein homologous to the human p70 Ku autoimmune antigen interacts with the P transposable element inverted repeats. Proc. Natl. Acad. Sci. USA 91: 12681-12685.
7. COLLEAUX, L., L. D'AURIOL, F. GALIBERT and B. DUJON, 1988 Recognition and cleavage site of the intron-encoded omega transposase. Proc. Natl. Acad. Sci. USA 85: 6022-6026.
8. DONOHO, G. P., 1996 Targeting modifications to mammalian chromosomal loci via recombinational repair of double-strand breaks. Ph.D. Thesis, Stanford University, Stanford, CA.
9. DUJON, B., 1988 Group I introns as mobile genetic elements: facts and mechanistic speculations - a review. Gene 82: 91-114.
10. DUSENBERY, R. L., and P. D. SMITH, 1996 Cellular responses to DNA damage in Drosophila melanogaster. Mutat. Res. 364: 113-145.
11. DYNAN, W., and S. YOO, 1998 Interaction of Ku protein and DNA-dependent protein kinase catalytic subunit with nucleic acids. Nucleic Acids Res. 26: 1551-1559.
12. ENGELS, W. R., D. M. JOHNSON-SCHLITZ, W. B. EGGLESTON and J. SVED, 1990 High-frequency P element loss in Drosophila is homolog dependent. Cell 62: 515-525.
13. ENGELS, W. R., C. R. PRESTON and D. M. JOHNSTON-SCHLITZ, 1994 Long-range cis preference in DNA homology search over the length of a Drosophila chromosome. Science 263: 1623-1625.
14. FISHMAN-LOBELL, J., and J. E. HABER, 1992 Removal of nonhomologous DNA ends in double-strand break recombination: the role of the yeast ultraviolet repair gene RAD1. Science 258: 480-484.
15. FORMOSA, T., and B. M. ALBERTS, 1986 DNA synthesis dependent on genetic recombination: characterization of a reaction catalyzed by purified bacteriophage T4 proteins. Cell 47: 793-806.
16. FULLER, M. T., 1995 Spermatogenesis, pp. 71-147 in The Development of Drosophila melanogaster, edited by M. BATE and A. MARTINEZ ARIAS. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
17. GLOOR, G. B., N. A. NASSIF, D. M. JOHNSON-SCHLITZ, C. R. PRESTON and W. R. ENGELS, 1991 Targeted gene replacement in Drosophila via P element-induced gap repair. Science 253: 1110-1117.
18. GOLIC, K. G., 1994 Local transposition of P elements in Drosophila melanogaster and recombination between duplicated elements using a site-specific recombinase. Genetics 137: 551-563.
19. GOLIC, K. G., and M. M. GOLIC, 1996 Engineering the Drosophila genome: chromosome rearrangements by design. Genetics 144: 1693-1711.
20. HABER, J. E., 1995 In vivo biochemistry: physical monitoring of recombination induced by site-specific endonucleases. Bioessays 17: 609-620.
21. JACKSON, S. P., and P. A. JEGGO, 1995 DNA double-strand break repairand V(D)J recombination: involvement of DNA-PK. Trends Biochem. Sci. 20: 412-415.
22. JASIN, M., 1996 Genetic manipulation of genomes with rare-cutting endonucleases. Trends Genet. 12: 224-228.
23. KAUFMAN, P. D., and D. C. RIO, 1992 P element transposition in vitro proceeds by a cut-and-paste mechanism and uses GTP as a cofactor. Cell 69: 27-39.
24. KEELER, K. J., and G. B. GLOOR, 1997 Efficient gap repair in Drosophila melanogaster requires a maximum of 31 nucleotides of homologous sequence at the searching ends. Mol. Cell. Biol. 17: 627-634.
25. KLAR, A. J. S., 1989 The interconversion of yeast mating-type: Saccharomyces cerevisiae and Schizosaccharomyces pombe, pp. 671-691 in Mobile DNA, edited by D. BERG and M. HOWE. American Society for Microbiology, Washington, DC.
26. LEUNG, W., A. MALKOVA and J. E. HABER, 1997 Gene targeting by linear duplex DNA frequently occurs by assimilation of a single strand that is subject to preferential mismatch correction. Proc. Natl. Acad. Sci. USA 94: 6851-6856.
27. LINDSLEY, D. L., and G. G. ZIMM, 1992 The Genome of Drosophila melanogaster. Academic Press, San Diego.
28. MICHIELS, F., D. BUTTERGEIT and R. RENKAWITZ-POHL, 1993 An 18-bp element in the 5′ untranslated region of the Drosophila beta2 tubulin mRNA regulates the mRNA level during postmeiotic stages of spermatogenesis. Eur. J. Cell. Biol. 62: 66-74.
29. MUELLER, J. E., J. CLYMAN, Y. J. HUANG, M. M. PARKER and M. BELFORT, 1996 Intron mobility in phage T4 occurs in the context of recombination-dependent DNA replication by way of multiple pathways. Genes Dev. 10: 351-364.
30. NASSIF, N., J. PENNEY, S. PAL, W. R. ENGELS and G. B. GLOOR, 1994 Efficient copying of nonhomologous sequences from ectopic sites via P-element-induced gap repair. Mol. Cell. Biol. 14: 1613-1625.
31. NEGRITTO, M. T., X. WU, T. KUO, S. CHU and A. M. BAILIS, 1997 Influence of DNA sequence identity on efficiency of targeted gene replacement. Mol. Cell. Biol. 17: 278-286.
32. O'BROCHTA, D. A., S. P. GOMEZ and A. M. HANDLER, 1991 P element excision in Drosophila melanogaster and related Drosophilids. Mol. Gen. Genet. 225: 387-394.
33. O'HARE, K., C. MURPHY, R. LEVIS and G. M. RUBIN, 1984 DNA sequence of the white locus of Drosophila melanogaster. J. Mol. Biol. 180: 437-455.
34. PATTON, J. S., X. V. GOMES and P. K. GEYER, 1992 Position-independent germline transformation in Drosophila using a cuticle pigmentation gene as a selectable marker. Nucleic Acids Res. 20: 5859-5860.
35. RIO, D. C., and G. M. RUBIN, 1988 Identification and purification of a Drosophila protein that binds to the terminal 31-base-pair inverted repeats of the P transposable element. Proc. Natl. Acad. Sci. USA 85: 8929-8933.
36. SAMBROOK, J., E. F. FRITSCH and T. MANIATIS, 1989 Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
37. SEKELSKY, J. J., K. S. MCKIM, G. M. CHIN and R. S. HAWLEY, 1995 The Drosophila meiotic recombination gene mei-9 encodes a homologue of the yeast excision repair protein Rad1. Genetics 141: 619-627.
38. STAVELEY, B. E., T. R. HESLIP, R. B. HODGETTS and J. B. BELL, 1995 Protected P-element termini suggest a role for inverted-repeat-binding protein in transposase-induced gap repair in Drosophila melanogaster. Genetics 139: 1321-1329.
39. STRUHL, G., and K. BASLER, 1993 Organizing activity of wingless protein in Drosophila. Cell 72: 527-540.
40. SUGAWARA, N., E. L. IVANOV, J. FISHMAN-LOBELL, B. L. RAY, X. WU et al., 1995 DNA structure-dependent requirements for yeast RAD genes in gene conversion. Nature 373: 84-86.
41. WEAVER, D. T., 1995 What to do at an end: DNA double-strand-break repair. Trends Genet. 11: 388-392.