Sequence changes in six variants of rice tungro bacilliform virus and their phylogenetic relationships

Journal of General Virology

Volumn 80, Issue 8, 1999, Pages 2229-2237

  Cabauatan, Pepito Q ^a   Melcher, Ulrich ^b   Ishikawa, Koichi ^c   Omura, Toshihiro ^c   Hibino, Hiroyuki ^d   Koganezawa, Hiroki ^e   Azzam, Ossmat ^a  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b OKLAHOMA STATE UNIVERSITY   (United States)

^c NATIONAL AGRICULTURAL RESEARCH CENTER   (Japan)

^d Natl Inst for Agroenvironmental S   (Japan)

^e NATIONAL AGRICULTURAL RESEARCH CENTER FOR WESTERN REGION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ARTICLE; DNA SEQUENCE; GENE DELETION; GENE INSERTION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PLANT VIRUS; PRIORITY JOURNAL; RICE TUNGRO BACILLIFORM VIRUS; VIRUS GENOME;

DNA VIRUSES; RICE TUNGRO BACILLIFORM VIRUS;

EID: 0032772124     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-80-8-2229     Document Type: Article

References (25)

1. Cabauatan, P. Q. & Hibino, H. (1988). Isolation, purification and serology of rice tungro bacilliform and spherical viruses. Plant Disease 72, 526-528.
2. Cabauatan, P. Q., Cabunagan, R. C. & Koganezawa, H. (1995). Biological variants of rice tungro viruses in the Philippines. Phytopathology 85, 77-81.
3. Cabauatan, P. Q., Arboleda, M. & Azzam, O. (1998). Differentiation of rice tungro bacilliform virus strains by restriction analysis and DNA hybridization. Journal of Virological Methods 76, 121-126.
4. Chenault, K. D. & Melcher, U. (1994 a). Patterns of nucleotide sequence variation among cauliflower mosaic virus isolates. Biochimie 76, 3-8.
5. Chenault, K. D. & Melcher, U. (1994 b). Phylogenetic relationships reveal recombination among isolates of cauliflower mosaic virus. Journal of Molecular Evolution 39, 496-505.
6. Choe, I. S., Melcher, U., Richards, K., Lebeurier, G. & Essenberg, R. C. (1985). Recombination between mutant cauliflower mosaic virus DNAs. Plant Molecular Biology 5, 281-289.
7. Fan, Z., Dahal, G., Dasgupta, I., Hay, J. & Hull, R. (1996). Variation in the genome of rice tungro bacilliform virus: molecular characterization of six isolates. Journal of General Virology 77, 847-854.
8. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17, 368-376.
9. Felsenstein, J. (1989). PHYLIP - phylogeny inference package. Cladistics 5, 164-166.
10. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
11. Hay, J. M., Jones, M. C., Blakebrough, M. L., Dasgupta, I., Davies, J. W. & Hull, R. (1991). An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus. Nucleic Acids Research 19, 2615-2621.
12. Hibino, H., Roechan, M. & Sudarisman, S. (1978). Association of two types of virus particles with penyakit habang (tungro disease) of rice in Indonesia. Phytopathology 68, 1412-1416.
13. Hibino, H., Ishikawa, K., Omura, T., Cabauatan, P. Q. & Koganezawa, H. (1991). Characterization of rice tungro bacilliform and rice tungro spherical viruses. Phytopathology 81, 1130-1132.
14. Hull, R. (1994). Resistance to plant viruses: obtaining genes by non-conventional approaches. Euphytica 75, 195-205.
15. Hull, R. (1996). Molecular biology of rice tungro viruses. Annual Review of Phytopathology 34, 275-297.
16. Kano, H., Koizumi, M., Noda, H., Hibino, H., Ishikawa, K., Omura, T., Cabauatan, P. Q. & Koganezawa, H. (1992). Nucleotide sequence of capsid protein gene of rice tungro bacilliform virus. Archives of Virology 124, 157-163.
17. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111-120.
18. Lebeurier, M., Hirth, L., Hohn, B. & Hohn, T. (1982). In vivo recombination of cauliflower mosaic virus DNA. Proceedings of the National Academy of Sciences, USA 79, 2932-2936.
19. Page, R. D. (1996). Tree View: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
20. Qu, R. D., Bhattacharyya, M., Laco, G. S., De Kochko, A., Suba Rao, B. L., Kaniewska, M. B., Elmer, J. S., Rochester, D. E., Smith, C. E. & Beachy, R. N. (1991). Characterization of the genome of rice tungro bacilliform virus: comparison with Commelina yellow mottle virus and caulimoviruses. Virology 185, 354-364.
21. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5467.
22. Schoelz, J. E. & Wintermantel, W. M. (1993). Expansion of viral host range through complementation and recombination in transgenic plants. Plant Cell 5, 1669-1679.
23. Takahashi, Y., Tiongco, E. R., Cabauatan, P. Q., Koganezawa, H., Hibino, H. & Omura, T. (1993). Detection of rice of rice tungro bacilliform virus by polymerase chain reaction for assessing mild infection of plants and viruliferous leafhoppers. Phytopathology 83, 655-659.
24. Vaden, V. R. & Melcher, U. (1990). Recombination sites in cauliflower mosaic virus DNAs: implications for mechanisms of recombination. Virology 177, 717-726.
25. Villegas, L. C., Druka, A., Bajet, N. B. & Hull, R. (1997). Genetic variation of rice tungro bacilliform virus in the Philippines. Virus Genes 15, 195-201.