Preliminary phylogenetic analysis of plastid-encoded genes from an anomalously pigmented dinoflagellate Gymnodinium mikimotoi (Gymnodiniales, Dinophyta)

Phycological Research

Volumn 47, Issue 4, 1999, Pages 257-262

  Takishita, Kiyotaka ^a   Nakano, Kouichirou ^a   Uchida, Aritsune ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Dinoflagellate; Gymnodinium mikimotoi; Phylogenetic analysis; Plastid; PsaA; PsbA; Small subunit ribosomal RNA

Indexed keywords

19' BUTANOYLOXYFUCOXANTHIN; 19' HEXANOYLOXYFUCOXANTHIN; ALGA GENETICS; AMINO ACID SEQUENCE; CARBOXY TERMINAL SEQUENCE; CAROTENE DERIVATIVE; FUCOXANTHIN; GENE SEQUENCING; HAPLOTYPE; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; P700 CHLOROPHYLL A APOPROTEIN; PERIDININ; PHYLOGENY; PLASTID; PROTEIN HYDROLYSIS; RIBOSOMAL RNA;

ALGAE; CRYPTOPHYTA; DINOPHYCEAE; EUKARYOTA; GYMNODINIALES; GYMNODINIUM MIKIMOTOI; HAPTOPHYCEAE; RHODOPHYTA; STRAMENOPILES;

EID: 0032761884     PISSN: 13220829     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1440-1835.1999.00175.x     Document Type: Article

References (26)

1. Arpin, N., Svec, W. A. and Liaaen-Jensen, S. 1976. New fucoxanthin-related carotenoids from Coccolithus huxleyi. Phytochemistry 15: 529-32.
2. Chesnick, J. M., Kooistra, W. H. C. F., Wellbrock, U. and Medlin, L. K. 1997. Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta). J. Euk. Microbiol. 44: 314-20.
3. Chesnick, J. M., Morden, C. W. and Schmieg, A. M. 1996. Identity of the endosymbiont of Peridinium foliaceum (Pyrrhophyta): Analysis of the rbcLS operon. J. Phycol. 32: 850-7.
4. Diner, B. A., Ries, D. F., Cohen, B. N. and Metz, J. G. 1988. COOH-terminal processing of polypeptide D1 of the photosystem II reaction center of Scenedesmus obliquus is necessary for the assembly of the oxygen-evolving complex. J. Biol. Chem. 263: 8972-80.
5. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
6. Frohman, M. A., Dush, M. K. and Martin, G. R. 1988. Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc. Natl Acad. Sci. USA 85: 8998-9002.
7. Gains, G. and Elbrächter, M. 1987. Heterotrophic nutrition. In Taylor, F. J. R. (Ed.) The Biology of Dinoflagellates. Botanical Monographs Vol. 21. Blackwell Science, Oxford, pp. 224-68.
8. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-20.
9. Kite, G. C. and Dodge, J. D. 1985. Structural organization of plastid DNA in two anomalously pigmented dinoflagellates. J. Phycol. 21: 50-6.
10. Liu, Y. G., Mitsukawa, N., Oosumi, T. and Whittier, R. F. 1995. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8: 457-63.
11. Marder, J. B., Goloubinoff, P. and Edelman, M. 1984. Molecular architecture of the rapidly metabolized 32-kilodalton protein of photosystem II. J. Biol. Chem. 259: 3900-8.
12. Nixon, P. J., Rögner, M. and Diner, B. A. 1991. Expression of a higher plant psbA gene in Synechocystis 6803 yields a functional hybrid photosystem II reaction center complex. Plant Cell 3: 383-95.
13. Nixon, P. J., Trost, J. T. and Diner, B. A. 1992. Role of the carboxyl terminus of polypeptide D1 in the assembly of a functional water-oxidizing manganese cluster in photosystem II of cyanobacterium Synechocystis sp. PCC 6803: Assembly requires a free carboxyl group at C-terminal position 344. Biochemistry 31: 10 859-71.
14. Saitou, N. and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-25.
15. Sako, Y., Kim, C. H., Ninomiya, H., Adachi, M. and Ishida, Y. 1990. Isozyme and cross analysis of mating populations in the Alexandrium catenella / tamarense species complex. In Graneli, E., Sundstrom, B., Edler, L. and Anderson, D. M. (Eds). Toxic Marine Phytoplankton. Elsevier, New York, pp. 320-3.
16. Sako, Y., Rokushima, M., Yamaguchi, M., Ishida, Y. and Uchida, A. 1998. Phylogenetic analysis and molecular identification of red tide dinoflagellate Gymnodinium mikimotoi using ribosomal RNA genes. In Reguera, B., Blanco, J., Fernandez, M. L. and Wyatt, T. (Eds). Harmful Algae. Grafisant, Santiago de Conjostela, pp. 295-8.
17. Saunders, G. W., Hill, D. R. A., Sexton, J. P. and Andersen, R. A. 1997. Small-subunit ribosomal RNA sequences from selected dinoflagellates: Testing classical evolutionary hypotheses with molecular systematic methods. Plant Syst. Evol. 11 (Suppl.): 237-59.
18. Suzuki, R. and Ishimaru, T. 1992. Characteristics of photosynthetic pigment composition of Gymnodinium mikimotoi Miyake et Kominami ex Oda. J. Oceanogr. 48: 367-75.
19. Takishita, K. and Uchida, A. 1999. Molecular cloning and nucleotide sequence analysis of psbA from the dinoflagellates: Origin of the dinoflagellate plastid. Phycol. Res. 47: 207-16.
20. Tangen, K. 1977. Blooms of Gyrodinium aureolum (Dinophyceae) in North European waters, accompanied by mortality in marine organisms. Sarsia 63: 124-33.
21. Tangen, K. and Björnland, T. 1981. Observations on pigments and morphology of Gyrodinium aureolum Hulbert, a marine dinoflagellate containing 19′-hexanoyloxyfucoxanthin as the main carotenoid. J. Plankton Res. 3: 389-401.
22. Taylor, F. J. R. 1980. On dinoflagellate evolution. Biosystems 13: 65-108.
23. Taylor, F. J. R. 1985. The taxonomy and relationships of red tide flagellates. In Anderson, D. M., White, A. W. and Baden D. G. (Eds). Toxic Dinoflagellates. Elsevier, New York, pp. 11-26.
24. Thompson, J. D., Higgings, D. G. and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl. Acids Res. 22: 4673-80.
25. Wright, S. W. and Jeffrey, S. W. 1987. Fucoxanthin pigment markers of marine phytoplankton analyzed by HPLC and HPTLC. Mar. Ecol. Prog. Ser. 38: 259-66.
26. Yoshikawa, T., Takishita, K., Ishida, Y. and Uchida, A. 1997. Molecular cloning and nucleotide sequence analysis of the gene coding for chloroplast-type ferredoxin from the dinoflagellates Peridinium bipes and Alexandrium tamarense. Fish Sci. 63: 692-700.