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Volumn 37, Issue 2, 1999, Pages 278-283

Searching for frameshift evolutionary relationships between protein sequence families

Author keywords

Domains; Evolution; Overlapping genes; Point mutations; Reading frame; Statistical significance

Indexed keywords

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; FRAMESHIFT MUTATION; MOLECULAR EVOLUTION; OPEN READING FRAME; POINT MUTATION; PRIORITY JOURNAL;

EID: 0032740153     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(19991101)37:2<278::AID-PROT12>3.0.CO;2-X     Document Type: Article
Times cited : (12)

References (14)
  • 1
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequences of two proteins
    • Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequences of two proteins. J Mol Biol 1970;48:443-453.
    • (1970) J Mol Biol , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 3
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff S, Henikoff JG. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 1992;89:10915-10919.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 4
    • 0028218683 scopus 로고
    • Modular arrangement of proteins as inferred from analysis of homology
    • Sonnhammer ELL, Kahn D. Modular arrangement of proteins as inferred from analysis of homology. Protein Sci 1994:3:482-492.
    • (1994) Protein Sci , vol.3 , pp. 482-492
    • Sonnhammer, E.L.L.1    Kahn, D.2
  • 5
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer ELL, Eddy SR, Durbin R. Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins 1997;28:405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.L.1    Eddy, S.R.2    Durbin, R.3
  • 6
    • 0029120253 scopus 로고
    • Cooperatively folded proteins in random sequence libraries
    • Davidson AR, Lumb KJ, Sauer RT. Cooperatively folded proteins in random sequence libraries. Nature Struct Biol 1995;2:856-863.
    • (1995) Nature Struct Biol , vol.2 , pp. 856-863
    • Davidson, A.R.1    Lumb, K.J.2    Sauer, R.T.3
  • 7
    • 23444436172 scopus 로고
    • Protein design by binary patterning of polar and nonpolar amino acids
    • Kamtekar S, Schiffer JM, Xiong H, Babik JM, Hecht MH. Protein design by binary patterning of polar and nonpolar amino acids. Science 1993;262:1680-1685.
    • (1993) Science , vol.262 , pp. 1680-1685
    • Kamtekar, S.1    Schiffer, J.M.2    Xiong, H.3    Babik, J.M.4    Hecht, M.H.5
  • 8
    • 0017298367 scopus 로고
    • Overlapping genes in bacteriophage øΧ174
    • Barrell BG, Air JM, Hutchinson CA. Overlapping genes in bacteriophage øΧ174. Nature 1976;264:34-36.
    • (1976) Nature , vol.264 , pp. 34-36
    • Barrell, B.G.1    Air, J.M.2    Hutchinson, C.A.3
  • 9
    • 0027992983 scopus 로고
    • Alternate RNA splicing of murine nfkb1 generates a nuclear isoform of the p50 precursor NF-kappa B1 that can function as a transactivator of NF-kappa B-regulated transcription
    • Grumont RJ, Fecondo J, Gerondakis S. Alternate RNA splicing of murine nfkb1 generates a nuclear isoform of the p50 precursor NF-kappa B1 that can function as a transactivator of NF-kappa B-regulated transcription. Mol Cell Biol 1994;14:8460-8470.
    • (1994) Mol Cell Biol , vol.14 , pp. 8460-8470
    • Grumont, R.J.1    Fecondo, J.2    Gerondakis, S.3
  • 10
    • 0027717299 scopus 로고
    • Detecting frame shifts by amino acid sequence comparison
    • Claverie J. Detecting frame shifts by amino acid sequence comparison. J Mol Biol 1993;234:1140-1157.
    • (1993) J Mol Biol , vol.234 , pp. 1140-1157
    • Claverie, J.1
  • 11
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol 1981;147:195-197.
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 12
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 13
    • 84972546031 scopus 로고
    • Sequence comparison significance and Poisson approximation
    • Waterman MS, Vingron M. Sequence comparison significance and Poisson approximation. Stat Sci 1994;9:367-381.
    • (1994) Stat Sci , vol.9 , pp. 367-381
    • Waterman, M.S.1    Vingron, M.2
  • 14
    • 0032871834 scopus 로고    scopus 로고
    • Finding families for genomic ORFans
    • in press
    • Fischer D, Eisenberg D. Finding families for genomic ORFans. Bioinformatics 1999; 15: in press.
    • (1999) Bioinformatics , vol.15
    • Fischer, D.1    Eisenberg, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.