Phylogenetic analysis of the lichen family Umbilicariaceae based on nuclear ITS1 and ITS2 rDNA sequences

Lichenologist

Volumn 31, Issue 5, 1999, Pages 477-489

  Ivanova, Natalia V ^a   Depriest, Paula T ^b   Bobrova, Vera K ^c   Troitsky, Alexey V ^c  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b DEPARTMENT OF PALEOBIOLOGY   (United States)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EUROTIALES; LASALLIA; LECANORINEAE; MYCOCALICIACEAE; ONYGENALES; UMBILICARIA; UMBILICARIACEAE;

EID: 0032719684     PISSN: 00242829     EISSN: None     Source Type: Journal    
DOI: 10.1006/lich.1999.0223     Document Type: Article

References (34)

1. Blum O. B., Kashevarov G. P. DNA homologies as a proof of the legitimacy of the establishment lichen genera Lasallia Mérat (Umbilicariaceae). Doklady Academii Nauk Ukrainskoi.S.S.R. Seriya B. 12:1986;61-64.
2. DePriest, P. T. Gargas, A. 1996, Origins of the lichen association in the fungi: phylogenetic analyses of nuclear small subunit ribosomal DNA sequences, Third meeting of the International Association for Lichenology. Progress and Problems in Lichenology in the Nineties, Abstracts: 100. Salzburg: University of Salzburg, DePriest, P. T. Stenroos, S. Ivanova, N. V. Gargas, A. 1997, Origins of the lichen association in the fungi: phylogenetic analyses of nuclear small subunit ribosomal DNA sequences. Invited presentation, Bridging the gap between phylogeny and classification of lichen-forming Ascomycetes: Annual AIBS Meeting, Montreal, Canada, American Journal of Botany, 84, 9.
3. DePriest, P. T. Gargas, A. 1996, Origins of the lichen association in the fungi: phylogenetic analyses of nuclear small subunit ribosomal DNA sequences, Third meeting of the International Association for Lichenology. Progress and Problems in Lichenology in the Nineties, Abstracts: 100. Salzburg: University of Salzburg, DePriest, P. T. Stenroos, S. Ivanova, N. V. Gargas, A. 1997, Origins of the lichen association in the fungi: phylogenetic analyses of nuclear small subunit ribosomal DNA sequences. Invited presentation, Bridging the gap between phylogeny and classification of lichen-forming Ascomycetes: Annual AIBS Meeting, Montreal, Canada, American Journal of Botany, 84, 9.
4. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791.
5. Frey E. Umbilicariaceae. Dr. L. Rabenhorst's Kryptogamen-Flora. 9:1933;204-424.
6. Frey E. Vorarbeiten zu einer Monographie der Umbilicariaceen. Berichte der Schweizerischen Botanischen Gesellschaft. 45:1936;198-230.
7. Gargas A., DePriest P. T. A nomenclature for fungal PCR primers with examples from intron-containing SSU rDNA. Mycologia. 88:1996;745-748.
8. Gargas A., DePriest P. T., Taylor J. W. Positions of multiple insertions in the SSU rDNA of lichen-forming fungi. Molecular Biology and Evolution. 12:1995a;208-218.
9. Gargas A., DePriest P. T., Grube M., Tehler A. Multiple origins of lichen symbioses in fungi suggested by the SSU rDNA phylogeny. Science. 268:1995b;1492-1495.
10. Grube M., DePriest P. T., Gargas A., Hafellner J. DNA isolation from lichen ascomata. Mycological Research. 99:1995;1321-1324.
11. Hafellner J., Hertel R., Rambold G., Timdal E. Discussion 4. Hawksworth D. L. Ascomycete Systematics: Problems and Perspectives in the Nineties. 1994;379-387 Plenum Press, New York.
12. Hageman C., Fahselt D. Relationships within the lichen family Umbilicariaceae based on enzyme electromorph data. Lichenologist. 24:1992;91-100.
13. Hasenhüttl G., Poelt J. Über die BrutkÖrner bei der Flechtengattung Umbilicaria. Berichte der Deutschen Botanischen Gesellschaft. 91:1978;275-296.
14. Hawksworth D. L., Kirk P. M., Sutton B. C., Pegler D. H. Ainsworth & Bisby's Dictionary of the Fungi. 1995;CAB International, Wallingford.
15. Imshaug H. A. Alpine lichens of Western United States and adjacent Canada. I. The macrolichens. Bryologist. 60:1957;177-271.
16. Ivanova N. V., Bobrova V. K. The use of 18S rDNA sequences in the phylogenetic analysis of the lichen family Umbilicariaceae. Abstracts: 108. Salzburg: University of Salzburg. Third meeting of the International Association for Lichenology. Progress and Problems in Lichenology in the Nineties. 1996.
17. Ivanova N. V., DePriest P. T., Bobrova V. K., Troitsky A. V. Group I introns in the fungal 18S rDNA of the lichen family Umbilicariaceae. Doklady Rossijskoj Academii Nauk. 363:1998;400-404.
18. Janex-Favre M. C. L'ontogénie et la structure des apothécies de l'Umbilicaria cylindrica. Revue Bryologique et Lichénologique. 40:1974;59-86.
19. Llano G. A. A Monograph of the Lichen family Umbilicariaceae in the Western Hemisphere. 1950;Office of Naval Research, Navexos P-831. Washington, D.C.
20. Mankin A. S., Skryabin K. G., Rubtsov P. M. Identification of ten additional nucleotides in the primary structure of yeast 18S rRNA. Gene. 44:1986;143.
21. Moller E. M., Bahnweg G., Sandermann H., Geiger H. H. A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Research. 20:1992;6115-6116.
22. Narui T., Culberson C. F., Shibata S. A contribution to the chemistry of the lichen family Umbilicaricaeae (Ascomycotina). Bryologist. 99:1996;199-211.
23. Niu Y., Wei J. Variations in ITS sequences of nuclear rDNA from two Lasallia species and their systematic significance. Mycosystema. 6:1993;25-29.
24. Poelt J. Classification. Ahmadjian V., Hale M. E. The Lichens. 1973;91-115 Academic Press, New York.
25. Rubtsov P. M., Musakhanov M. M., Zakharyev V. M., Krayev A. S., Skryabin K. G., Bayev A. A. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene fromSaccharomyces cerevisiae. Nucleic Acids Research. 8:1980;5779-5794.
26. Scholander P. F. On the apothecia in the lichen family Umbilicariaceae. Nyt Magazin for Naturvidenskaberne. 75:1934;11-31.
27. Stenroos S., DePriest P. T. SSU rDNA phylogeny of the cladoniiform lichens. American Journal of Botany. 85:1998a;1548-1559.
28. Stenroos S., DePriest P. T. Small insertions at a shared position in the SSU rDNA of Lecanorales (lichen-forming Ascomycetes). Current Genetics. 33:1998b;124-130.
29. Swofford, D. L. 1999, Massachusetts: Sinauer Associates.
30. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research. 22:1994;4673-4680.
31. van de Peer Y., de Wachter R. TREECON for Windows: a software package for the construction and drawing of the evolutionary trees for the Microsoft Windows environment. Computer Applications in the Biosciences. 9:1993;177-182.
32. Vinuesa M. A., Tibell L., Sanchez-Puelles J. M., Valmaseda M. Intra- and interspecific variations between Mycocalicium subtile and Mycocalicium albonigrum (Mycocalicaeaceae, Caliciales) determined by sequence analysis of the ITS1-5·8S-ITS2 rDNA regions. Abstracts. Salzburg: University of Salzburg. Third meeting of the International Association for Lichenology. Progress and Problems in Lichenology in the Nineties. 1996.
33. Wei, J. -C. Jiang, Y. -M. 1993, The Asian Umbilicariaceae (Ascomycota). Mycosystema Monographicum, Series No. 1. International Academic Publishers.
34. White T. J., Bruns T., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. PCR Protocols: A Guide to Methods and Applications. 1990;315-322 Academic Press, San Diego.