Detection of microbial groups metabolizing a substrate in soil based on the [l4C] quinone profile

Soil Science and Plant Nutrition

Volumn 45, Issue 3, 1999, Pages 669-679

  Saitou, Katsuaki ^a   Fujie, Koichi ^b   Katayama, Arata ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b TOYOHASHI UNIVERSITY OF TECHNOLOGY   (Japan)

Author keywords

Metabolizing activity; Soil microbial community; l4C labeling of quinones; U 14C glucose; U l4C glycine

Indexed keywords

EID: 0032719146     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1080/00380768.1999.10415830     Document Type: Article

References (34)

1. Akagawa-Matsushita, M., Itoh, T, Katayama, Y., Kuraishi, H., and Yamasato, K., 1992. Isoprenoid quinone composition of some marine Alteromonas. Marinomonas. Deleya. Pseudomonas, and Shewanella species. J Gen. Microbiol., 138:2275–2281.
2. Akimov, V., 1996. Towards the evaluation of diversity of soil bacteria, Tentative list of soil-borne genera having more than 5 species, Workshop “Strategy for Cataloguing of Soil Bacteria”—Extensive Research of Bacterial World in Soil— Sendai, Japan
3. Alexander, M., 1994. Biodegradation and Bioremediation, 302–302. San Diego:Academic Press.
4. Arao, T. 1997. Analysis of phospholipid fatty acids in soil and the microbial biomass. Abstr. Annu. Meet. Jpn. Soc. Soil Sci. Plant Nutr., 43:249–250. (in Japanese)
5. Bogan, B.W., Schoenike, B., Lamar, R.T., and Cullen, D., 1996a. Expression of lip genes during growth in soil and oxidation. Appl. Environ. Microbiol., 62:3697–3703.
6. Bogan, B.W., Schoenike, B., Lamar, R.T., and Cullen, D., 1996b. Manganese peroxidase mRNA and enzyme activity levels during bioremediation of polycyclic aromatic hydrocarbon-contaminated soils with Phanerocheate chrysosporium. Appl. Environ. Microbiol, 62:2381–2386.
7. Brock, TD., Madigan, M.T, Martinko, J.M., and Parker, J., 1994. Biology of Microorganisms, Edited by:7th ed. 909–909. London:Prentice-Hall, Inc.
8. Brookes, P.C., Landman, A., Pruden, G., and Jenkinson, D.S., 1985. Chloroform fumigation and the release of soil nitrogen:a rapid direct extraction method to measure microbial biomass nitrogen in soil. Soil Biol. Biochem., 17:837–842.
9. Carter, J.P., and Lynch, J.M., 1993. “Immunological and molecular techniques for studying the dynamics of microbial populations and communities in soil”. In Soil Biochemistry, Edited by:Bollag, J.-M., and Stotzky, G., Vol. 8, 249–272. New York, Basel, Hong Kong:Marcel Dekker, Inc.
10. Collins, M., and Jones, D., 1981. Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbial. Rev., 45:316–354.
11. Domsch, K.H., Jagnow, G., and Anderson, T.H., 1978. An ecological concept for the assessment of side-effects of agrochemicals on soil microorganisms. Residue Rev., 86:65–105.
12. Fleming, J.T., Sanseverino, J., and Sayler, G.S., 1993. Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ. Sci. Technol., 27:1068–1074.
13. Fujie, K., Hu, H.-Y., Tanaka, H., Urano, K., Saitou, K., and Katayama, A., 1998a. Analysis of respiratory quinones in soil for characterization of micro biota. Soil Sci. Plant Nutr., 44:393–404.
14. Fujie, K., Hu, H.-Y., Tanaka, H., Urano, K., Saitou, K., and Katayama, A., 1998b. Effect of drying treatment on the respiratory quinone profile in soil. Soil Sci. Plant Nutr., 44:467–470.
15. 2 fixation under aerobic and anaerobic conditions. Soil Sci. Plant Nutr., 36:215–224.
16. Hiraishi, A., 1996. Microbial diversity, phylogeny and taxonomy. J. Jpn. Soc. Water Environ., 19:250–256. (in Japanese)
17. Hiraishi, A., Morishima, Y., and Takeuchi, J., 1991. Numerical analysis of lip oquin one patterns in monitoring bacterial community dynamics in wastewater treatment systems. J. Gen. Appl. Microbial., 37:57–70.
18. Hiraishi, A., Shin, Y.K., and Sugiyama, J., 1992. Rapid profiling of bacterial quinones by two-dimensional thin-layer chromatography. Lett. Appl. Microbial., 14:170–173.
19. Hoenerlage, W., Hahn, D., and Zeyer, J., 1995. Detection of mRNA of nprM in Bacillus megaterium ATCC 14581 grown in soil by whole-cell hybridization. Arch. Microbial., 163:235–241.
20. Imhoff, J.F., 1984. Quinones of phototrophic purple bacteria. FEMS Microbial. Lett., 25:85–89.
21. Iwasaki, M., and Hiraishi, A., 1998. A new approach to numerical analyses of microbial quinone profiles in the environment. Microbes Environ., 13:67–76.
22. Jeffrey, W.H., Nazaret, S., and Have, R.V., 1994. Improved method for recovery of mRNA from aquatic samples and its application to detection of mer expression. Appl. Environ. Microbial., 60:1814–1821.
23. Katayama, A., Hu, H.-Y., Nozawa, M., Yamakawa, H., and Fujie, K., 1998. Long-term changes in microbial community structure in soils subjected to different fertilizing practices revealed by quinone profile analysis. Soil Sci. Plant Nutr., 44:559–569.
24. 2)) in fungi. Biochem. J., 123:331–339.
25. Morgan, J.A., and Winstanley, C., 1997. “Microbial biomarkers”. In Modern Soil Microbiology, Edited by:Van Elsas, J.D., Trevors, J.T., and Wellington, E.M., 331–352. New York:Marcel Dekker, Inc.
26. Mori, T., Fujie, K., and Katayama, A., 1998. Bacterial and fungal contributions to chlorothalonil degradation in soil. Soil Sci. Plant Nutr., 44:297–304.
27. Phelps, T.J., Pfiffner, S.M., Sargent, K.A., and White, D.C., 1994. Factors influencing the abundance and metabolic capacities of microorganisms in Eastern Coastal Plain sediments. Microb. Ecol., 28:351–364.
28. Saitou, K., Nagasaki, K., Yamakawa, H., Hu, H.-Y., Fujie, K., and Katayama, A., 1999. Linear relation between the amount of respiratory quinones and the microbial biomass in soil. Soil Sci. Plant Nutr., 45:775–778.
29. 14C-labe1ed glucose and phenolics in Taiga forest floor:Effect of substrate quality, successional state, and season. Soil Biol. Biochem., 25:1379–1389.
30. Torsvik, V., Sorheim, R., and Goksoyr, J., 1996. Total bacterial diversity in soil and sediment communities —a review. J. Ind. Microbial., 17:170–178.
31. Uchida, S., Tanaka, H., Fujie, K., and Katayama, A., 1999. Changes in microbial community structure in soil percolated with pentachlorophenol with reference to respiratory quinone profile. J. Pestic. Sci., 24:186–188.
32. Vance, E.D., Brooks, P.C., and Jenkinson, D.S., 1987. An extraction method for measuring soil microbial biomass. Soil Biol. Biochem., 19:703–707.
33. Xu, H.H., and Tabita, F.R., 1996. Ribulose-l,5-bisphosphate carboxylase/oxygenase gene expression and diversity of Lake Erie planktonic microorganisms. Appl. Environ. Microbial., 62:1913–1921.
34. Yokota, A., 1998. Recent advances in taxonomy of actinomycetes. Seibutsu Kogaku Kaishi, 76:59–65. (in Japanese)