Molecular characterization of a new furovirus mainly infecting rye

Archives of Virology

Volumn 144, Issue 11, 1999, Pages 2125-2140

  Koenig, R ^a   Pleij, C W A ^b   Huth, W ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

FUROVIRUS; NUCLEOTIDE SEQUENCE; PLANT MICROORGANISM INTERACTION; PSEUDOKNOT DOMAIN; RNA ANALYSIS; SOIL BORNE RYE MOSAIC FUROVIRUS; VIRUS CHARACTERIZATION;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; MOSAIC VIRUSES; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; POLYMERASE CHAIN REACTION; RNA, VIRAL; SECALE CEREALE; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID;

FUROVIRUS; SECALE CEREALE; TRITICUM AESTIVUM;

EID: 0032702647     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050627     Document Type: Article

References (25)

1. 1. Chen J, Nongnong S, Wilson TMA, Antoniw JF, MacFarlane SA, Adams MJ (1996) Sequence analysis of wheat and oat furovirus capsid protein genes suggests that oat golden stripe virus is a strain of soil-borne wheat mosaic virus. Virus Res 41: 179-183 (Abstract)
2. 2. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequences analyses for the VAX. Nucleic Acids Res 12: 387-395
3. 3. Francki RIB, Fauquet CM, Knudson DL, Brown F (1991) Classification and Nomenclature of viruses. Fifth Report of the International Committee on Taxonomy of Viruses. Springer, Wien New York (Arch Virol [Suppl] 2)
4. 4. Gultyaev AP, van Batenburg FHD, Pleij CWA (1995) The computer simulation of RNA folding pathways using a genetic algorithm. J Mol Biol 250: 37-51
5. 5. Hellendoorn K, Mar AW, Gultyaev AP, Pleij CWA (1996) Secondary structure model of the coat protein gene of turnip yellow mosaic virus RNA: long C-rich, single stranded regions. Virology 224: 43-54.
6. 6. Herzog E, Guilley H, Manohar SK, Dollet M, Richards K, Fritsch C, Jonard G (1994) Complete nucleotide sequence of peanut clump virus RNA 1 and relationships with other fungus-transmitted rod-shaped viruses. J Gen Virol 75: 3147-3155
7. 7. Hiruki C, Roy KL (1992) A comparative study on the RNA-2 nucleotide sequences of two sweet clover necrotic mosaic virus strains. J Gen Virol 73: 2483-2486 (Abstract)
8. 8. Huth W, Lesemann D-E (1990) Wheat soil-borne mosaic virus isolated from rye in Germany. Schriftenreihe Deutsch Phytomedizin Gesellschaft, Bd 1, Proc 1st Symp IWG-PVFV, Braunschweig, Aug 1990, Compiled by R Koenig, Ulmer Verlag, Stuttgart I: 139-141
9. 9. Huth W, Lesemann D-E (1996) Fungus-transmitted soil-borne viruses on rye in Germany. Z PflKrankh 103: 120-124
10. 10. Kashiwazaki S, Scott KP, Reavy B, Harrison BD (1995) Sequence analysis and gene content of potato mop top virus RNA 3: further evidence of heterogeneity in the genome organization of furoviruses. Virology 206: 701-706
11. 11. Kendall TL, Lommel SA (1992) Nucleotide sequence of carnation ringspot dianthovirus RNA-2. J Gen Virol 73: 2479-2482 (Abstract)
12. 12. Koenig R (1997) Magnetic bead technology aids sequence determinations for the 3′-and 5′-ends of viral RNAs. BioTechniques 23: 102-104
13. 13. Koenig R, Loss S (1997) Beet soil-borne virus RNA 1: genetic analysis enabled by a starting sequence generated with primers to highly conserved helicase-encoding domains. J Gen Virol 78: 3161-3165
14. 14. Koenig R, Lüddecke P, Haeberlé AM (1995) Detection of beet necrotic yellow vein virus strains, variants and mixed infections by examining single-strand conformation polymorphisms of immunocapture RT-PCR products. J Gen Virol 76: 2051-2055
15. 15. Koenig R, Pleij CWA, Beier C, Commandeur U (1998) Genome properties of beet virus Q, a new furo-like virus from sugarbeet, determined from unpurified virus. J Gen Virol 79: 2027-2036
16. 16. Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28: 375-430
17. 17. Lommel SA, Weston Fina M, Xiong Z, Lomonossoff GP (1988) The nucleotide sequence and gene organization of red clover necrotic mosaic virus RNA-2. Nucleic Acids Res 16: 8602 (Abstract)
18. 18. Pleij CWA, Abrahams JP, van Belkum A, Rietveld K, Bosch L (1987), The spatial folding of the 3′ noncoding region of aminoacylatable plant viral RNAs. In: Brinton MA, Rueckert R (eds) Positive strand RNA viruses. Alan Riss, New York, pp 299-316 (UCLA Symposia on Molecular and Cellular Biology, New Series, Vol. 54)
19. 19. Pringle CR (1998) The universal system of virus taxonomy of the International Committee on Virus Taxonomy (ITCV), including new proposals ratified since publication of the Sixth ITCV Report in 1995. Arch Virol 143: 203-210
20. 20. Shirako Y (1998) Non-AUG translation initiation in a plant RNA virus: a forty amino-acid extension is added to the N-terminus of soil-borne wheat mosaic virus capsid protein. J Virol 72: 1677-1682 (Abstract)
21. 21. Shirako Y, Wilson TMA (1993) Complete nucleotide sequence and organization of the bipartite RNA genome of soil-borne wheat mosaic virus. Virology 195: 16-32
22. 22. Tamada T, Schmitt C, Saito M, Guilley H, Richards K, Jonard G (1996) High resolution analysis of the readthrough domain of beet necrotic yellow vein virus readthrough protein: a KTER motif is important for efficient transmission of the virus by Polymyxa betae. J Gen Virol 77: 1359-1367
23. 23. Uhde K, Koenig R, Lesemann D-E (1998) An onion isolate of tobacco rattle virus: reactivity with an antiserum to Hypochoeris mosaic virus, a putative furovirus, and molecular analysis of its RNA 2. Arch Virol 143: 1041-1053
24. 24. van Belkum A, Abrahams JP, Pleij CWA, Bosch L (1985) Five pseudoknots are present at the 204 nucleotides long 3′ noncoding region of tobacco mosaic virus RNA. Nucleic Acids Res 13: 7673-7686
25. 25. Van Regenmortel MHV, Bishop DHL, Fauquet CM, Mayo MA, Maniloff J, Calisher CH (1997) Guidelines to the demarcation of virus species. Arch Virol 142: 1505-1518