The genetic structure and conservation of aus, aman and boro rices from Bangladesh

Genetic Resources and Crop Evolution

Volumn 46, Issue 6, 1999, Pages 587-598

  Parsons, B J ^a   Newbury, H J ^a   Jackson, M T ^b   Ford Lloyd, B V ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Diversity; Genetic resources; GIS; Oryza sativa; RAPD; Rice

Indexed keywords

BANGLADESH; CLUSTER ANALYSIS; DNA MARKER; ECOTYPE; GENETIC CONSERVATION; GENETIC DIVERSITY; GENETIC STRUCTURE; GERMPLASM; MULTIVARIATE ANALYSIS; PLANT VARIETY; RANDOM AMPLIFIED POLYMORPHIC DNA; RICE;

CONSERVATION; GENETIC RESOURCE; GENETIC STRUCTURE; RICE;

BANGLADESH;

EID: 0032701655     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008749532171     Document Type: Article

References (39)

1. Alim, A., 1974. An introduction to Bangladesh agriculture. (Dacca: Ministry of Agriculture).
2. Bowman, K.O., K. Hutcheson, E.P. Odum & L.R. Shenton, 1971. Comments on the distribution of indices of diversity. Stat. Ecol. 3: 315-366.
3. Brown, A.H.D., 1989. Core collections: a practical approach to genetic resources management. Genome 31: 818-824.
4. Brown, A.H.D., 1995. The core collection at the cross roads. In: Hodgkin, T., A.H.D. Brown, Th.J.L. van Hintum & E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources. John Wiley and Sons, New York, NY.
5. Chang, T.T., 1989. The management of rice genetic resources. Genome 31: 825-831.
6. Chang, T.T., Y. Pan, Q. Chu, R. Peiris & G.C. Loresto, 1991. Cytogenetic, electrophoretic, and root studies of javanica rices. In: Rice Genetics II, IRRI, ed. (Manila: IRRI), pp. 21-31.
7. ESRI Inc., 1993. Understanding GIS: The ARC/INFO Method. Longman Scientific & Technical, Harlow.
8. FAO, 1988. Land resources appraisal of Bangladesh for agricultural development. Report 4 Hydro-climatic resources. (Rome: FAO).
9. Glaszmann, J.C., 1986. A varietal classification of Asian cultivated rice (Oryza sativa L.) based on isozyme polymorphism. In: Rice Genetics, IRRI, ed. (Manila: IRRI), pp. 119-130.
10. Glaszmann, J.C., 1987. Isozymes and classification of Asian rice varieties. Theor. Appl. Genet. 74: 21-30.
11. Glaszmann, J.C., 1988. Geographic pattern of variation among Asian native rice cultivars (Oryza sativa L.) based on fifteen isozyme loci. Genome 30: 782-792.
12. Glaszmann, J.C., P. Benyayer & M. Arnaud, 1989. Genetic divergence among rices from Northeast India. Rice Genet. Newslett. 6: 65.
13. Glaszmann, J.C., T. Mew, H. Hibino, C.K. Kim, T.I. Vergel de Dios-Mew, C.H. Vera Cruz, J.L. Notteghem & J.M. Bonman, 1996. Molecular variation as a diverse source of disease resistance in cultivated rice. In: Rice Genetics III, G.S. Khush ed. (Manila: IRRI), pp. 460-465.
14. International Rice research Institute, 1980. Descriptors for rice Oryza sativa L. IBPGR-IRRI Advisory Committee. P.O. Box 933, Manila, Philippines.
15. Jackson, M. & R. Huggan, 1993. Sharing the diversity of rice to feed the world. Diversity 9: 22-25.
16. Jackson, M., 1997. Conservation of rice genetic resources - the role of the International Rice Genebank at IRRI. Plant Mol. Biol. 35: 61-67.
17. Kato, S., 1930. On the affinity of cultivated varieties of rice plants Oryza sativa L. Journal of the Department of Agriculture, Kyushu Imperial University 2: 241-276.
18. Morinaga, T., 1954. Classification of rice varieties on the basis of affinity. Jpn. J. Breeding 4: 1-19.
19. Morinaga, T. & H. Kuriyama, 1955. Japonica type rice in the subcontinent of India and Java. Jpn. J. Breeding 5: 148-153.
20. Morinaga, T. & H. Kuriyama, 1958. Intermediate type of rice in the subcontinent of India and Java. Jpn. J. Breeding 7: 253-258.
21. Nagamine, T., J.H. Xiong & Q. Xiao, 1992. Genetic variation in several isozymes of indigenous rice varieties in the Yunnan province of China. Jpn. J. Breeding 42: 507-513.
22. Nei, M., 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323.
23. Nevo, E., D. Zohary, A.H.D. Brown & M. Haber, 1979. Genetic diversity and environmental associations of wild barley, Hordeum spontaneum, in Israel. Evolution 33: 815-833.
24. Oka, H.I., 1953. Phylogenetic differentiation of cultivated rice, 1. Variations in various characters and character combinations among rice varieties. Jpn. J. Breeding 3: 33-34.
25. Parsons, B.J., H.J. Newbury, M.T. Jackson & B.V. Ford-Lloyd, 1997. Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. Mol. Breeding 3: 115-125.
26. Rohlf, F.J., 1992. NTSYS-pc Numerical Taxonomy and Multivariate Analysis System Version 1.70. State University of New York, Stony Brook, NY.
27. Sano, R. & H. Morishima, 1992. Indica-japonica differentiation of rice cultivars viewed from variations in key characters and isozymes, with special reference to landraces from the Himalayan hilly areas. Theor. Appl. Genet. 84: 266-274.
28. Second, G., 1982. Origin of the genic diversity of cultivated rice (Oryza spp.): study of the polymorphism scored at 40 isozyme loci. Jpn. J. Genetics 57: 25-57.
29. SGRP, 1996. Report of the internally commissioned external review of the cgIAR genebank operations. International Plant Genetic Resources Institute, Rome, Italy.
30. SGRP, 1997. Report of the internally commissioned external review of the cgIAR genebank operations. Annex: Centres' responses to the external review. International Plant Genetic Resources Institute, Rome, Italy.
31. Strategic Mapping Inc., 1994. Atlas GIS reference manual. Strategic Mapping Inc., Santa Clara.
32. Takahashi, N. & A.H.A. Hamza, 1983. Differentiation of ecotypes in Oryza sativa L. I. Re-examination for colour reaction with phenol. Jpn. J. Breeding 33: 243-250.
33. Ueno, K., T. Sato & N. Takahashi, 1990. The indica-japonica classification of Asian rice ecotypes and Japanese lowland and upland rice (Oryza sativa L.). Euphytica 46: 161-164.
34. van Hintum, Th.J.L., 1995. Hierarchical approaches to the analysis of genetic diversity in crop plants. In: Hodgkin, T., A.H.D. Brown, Th.J.L. van Hintum & E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources, IPGRI, Rome, pp. 23-34.
35. Virk, P.S., B.V. Ford-Lloyd, M.T. Jackson & H.J. Newbury, 1995. Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74: 170-179.
36. Williams, J.G.K., A.R. Kubelik, K.J. Livak, J.A. Rafalski & S.V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.
37. Yang, G.P., M.A. Saghai Maroof, C.G. Xu, Q. Zhang & R.M. Biyashev, 1994. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Molecular and General Genetics 245: 187-194.
38. Zaman, S.M.H., 1980. Ecology of transplant aman rice. In: Proceedings of the International seminar on photoperiod-sensitive transplant rice 1977. (Dacca, Bangladesh Rice Research Institute), pp. 1-7.
39. Zhang, Q., M.A. Saghai Maroof, T.Y. Lu & B.Z. Shen, 1992. Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis. Theor. Appl. Genet. 83: 495-499.