Simulation of biomimetic recognition between polymers and surfaces

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 21, 1999, Pages 11707-11712

  Golumbfskie, Aaron J ^a   Pande, Vijay S ^b   Chakraborty, Arup K ^a,b  

^a University of California   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYMER;

ADSORPTION; ARTICLE; KINETICS; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; PATTERN RECOGNITION; PRIORITY JOURNAL; SIMULATION;

ALGORITHMS; COMPUTER SIMULATION; KINETICS; MODELS, THEORETICAL; MONTE CARLO METHOD; PEPTIDES; POLYMERS; PROTEIN BINDING; PROTEIN ENGINEERING; THERMODYNAMICS;

EID: 0032692773     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.21.11707     Document Type: Article

References (28)

1. Todd, R. J., Johnson, R. D. & Arnold, F. H. (1994) J. Chromatogr. A 662, 13-26.
2. Sigal, G., Mammen, M., Dahmann, G. & Whitesides, G. M. (1996) J. Am. Chem. Soc. 118, 3789-3800.
3. Irback, A., Peterson, C. & Potthast, F. (1996) Proc. Natl. Acad. Sci. USA 93, 9533-9538.
4. Pande, V. S., Grosberg, A. Y. & Tanaka, T. (1994) Proc. Natl. Acad. Sci. USA 91, 12972-12979.
5. Dewey, G. (1997) Fractals in Molecular Biophysics (Oxford Univ. Press, Oxford).
6. Chan, H. S. & Dill, K. A. (1991) Annu. Rev. Biophys. Biophys. Chem. 20, 447-490.
7. Muthukumar, M. (1995) J. Chem. Phys. 103, 4723-4731.
8. Kong, C. Y. & Muthukumar, M. (1998) J. Chem. Phys. 109, 1522-1527.
9. Zheligovskaya, E. A., Khalatur, P. G. & Khokhlov, A. R. (1999) Phys. Rev. E Stat. Phys. Plasmas Fluids Relat. Interdiscip. Top. 59, 3071-3078.
10. Srebnik, S., Chakraborty, A. K. & Shakhnovich, E. I. (1996) Phys. Rev. Lett. 77, 3157-3160.
11. Bratko, D., Chakraborty, A. K. & Shakhnovich, E. I. (1997) Chem. Phys. Lett. 280, 46-52.
12. Chakraborty, A. K. & Bratko, D. (1998) J. Chem. Phys. 108, 1676-1682.
13. Odian, G. G. (1991) Principles of Polymerization (Wiley, New York).
14. Leduc, M. R., Hayes, W. & Frechet, J. M. J. (1998) J. Polym. Sci. A 36, 1-10.
15. Berndt, P., Fields, G. B. & Tirrell, M. (1995) J. Am. Chem. Soc. 117, 9515-9522.
16. Stranick, S. J., Parikh, A. N., Tao, Y. T., Allara, D. L. & Weiss, P. S. (1994) J. Phys. Chem. 98, 7636-7646.
17. deGennes, P. G. (1979) Scaling Concepts in Polymer Physics (Cornell Univ. Press, Ithaca, NY).
18. Hu, Y., Macinnis, J. M., Cherayil, B. J., Fleming, G. R., Freed, K. F. & Perico, A. (1990) J. Chem. Phys. 93, 822-836.
19. Byrne, A., Kiernan, P., Green, D. & Dawson, K. A. (1995) J. Chem. Phys. 102, 573-577.
20. Termonia, Y. (1997) Macromolecules 30, 5367-5371.
21. Kauffman, S. A. (1993) The Origins of Order Self-Organization and Selection in Evolution (Oxford Univ. Press, New York).
22. Fischer, K. H. & Hertz, J. A. (1991) Spin Glasses (Cambridge Univ. Press, Cambridge, U.K.).
23. Shakhnovich, E. I. & Gutin, A. M. (1990) Nature (London) 346, 773-775.
24. Wolynes, P. G., Onuchic, J. N. & Thirumalai, D. (1995) Science 267, 1619-1620.
25. Chan, H. S. & Dill, K. A. (1993) Phys. Today 46 (N2), 24-32.
26. Brooks, C. L., III, Karplus, M. & Pettitt, B. M. (1988) Proteins: A Theoretical Perspective of Dynamics, Structure, and Thermodynamics (Wiley, New York).
27. Xie, X. S. (1996) Acc. Chem. Res. 29, 598-606.
28. Moerner, W. E. & Orrit, M. (1999) Science 283, 1670-1674.