메뉴 건너뛰기




Volumn 225, Issue , 1999, Pages 113-127

The binding site of sodium in the gramicidin A channel

Author keywords

[No Author keywords available]

Indexed keywords

ANTIINFECTIVE AGENT; GRAMICIDIN; ION CHANNEL; SODIUM;

EID: 0032602279     PISSN: None     EISSN: None     Source Type: Book Series    
DOI: None     Document Type: Article
Times cited : (2)

References (35)
  • 1
    • 0026471029 scopus 로고
    • Molecular determinants of channel function
    • Andersen OS, Koeppe RE II 1992 Molecular determinants of channel function. Physiol Rev 72 (suppl):S89-S158
    • (1992) Physiol Rev , vol.72 , Issue.SUPPL.
    • Andersen, O.S.1    Koeppe R.E. II2
  • 2
    • 0019299124 scopus 로고
    • Ion movement through gramicidin A channels. On the importance of the aqueous diffusion resistance, and ion-water interactions
    • Andersen OS, Procopio J 1980 Ion movement through gramicidin A channels. On the importance of the aqueous diffusion resistance, and ion-water interactions. Acta Physiol Scand Suppl 481:27-35
    • (1980) Acta Physiol Scand Suppl , vol.481 , pp. 27-35
    • Andersen, O.S.1    Procopio, J.2
  • 3
    • 0021892874 scopus 로고
    • 1H-NMR study of gramicidin-A transmembrane ion channel. Head-to-head right-handed, single stranded helices
    • 1H-NMR study of gramicidin-A transmembrane ion channel. Head-to-head right-handed, single stranded helices. FEBS Lett 186:168-174
    • (1985) FEBS Lett , vol.186 , pp. 168-174
    • Arseniev, A.S.1    Barsukov, I.L.2    Bystrov, V.F.3    Lomize, A.L.4
  • 4
    • 0026778201 scopus 로고
    • Amino acid substitutions and ion channel function. Model-dependent conclusions
    • Becker MD, Koeppe RE II, Andersen OS 1992 Amino acid substitutions and ion channel function. Model-dependent conclusions. Biophys J 62:25-27
    • (1992) Biophys J , vol.62 , pp. 25-27
    • Becker, M.D.1    Koeppe R.E. II2    Andersen, O.S.3
  • 6
    • 0023930650 scopus 로고
    • Permeation characteristics of gramicidin conformers
    • Busath D, Szabo C 1988 Permeation characteristics of gramicidin conformers. Biophys J 53:697-707
    • (1988) Biophys J , vol.53 , pp. 697-707
    • Busath, D.1    Szabo, C.2
  • 7
    • 0021070747 scopus 로고
    • Ionic selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels
    • Eisenman G, Horn R 1983 Ionic selectivity revisited: the role of kinetic and equilibrium processes in ion permeation through channels. J Membr Biol 76:197-225
    • (1983) J Membr Biol , vol.76 , pp. 197-225
    • Eisenman, G.1    Horn, R.2
  • 8
    • 0004028236 scopus 로고
    • Energy barriers in ionic channels. Data for gramicidin A interpreted using a single-file (3B4S″) model having 3 barriers separating 4 sites
    • Spach G (ed) Elsevier Science, Amsterdam
    • Eisenman G, Sandblom JP 1983 Energy barriers in ionic channels. Data for gramicidin A interpreted using a single-file (3B4S″) model having 3 barriers separating 4 sites. In: Spach G (ed) Physical chemistry of transmembrane ion motions. Elsevier Science, Amsterdam, p 329-348
    • (1983) Physical Chemistry of Transmembrane Ion Motions , pp. 329-348
    • Eisenman, G.1    Sandblom, J.P.2
  • 12
    • 0027360175 scopus 로고
    • High-resolution conformation of gramicidin A in lipid bilayer by solid-state NMR
    • Ketchem RR, Hu W, Cross TA 1993 High-resolution conformation of gramicidin A in lipid bilayer by solid-state NMR. Science 261:1457-1460
    • (1993) Science , vol.261 , pp. 1457-1460
    • Ketchem, R.R.1    Hu, W.2    Cross, T.A.3
  • 13
    • 0015788893 scopus 로고
    • Ion transport through pores: A rate-theory analysis
    • Läuger P 1973 Ion transport through pores: a rate-theory analysis. Biochim Biophys Acta 311:423-441
    • (1973) Biochim Biophys Acta , vol.311 , pp. 423-441
    • Läuger, P.1
  • 14
    • 0029283171 scopus 로고
    • 15N NMR characterization of polypeptide backbone libarations
    • 15N NMR characterization of polypeptide backbone libarations. J Magn Reson B 107:43-50
    • (1995) J Magn Reson B , vol.107 , pp. 43-50
    • Lazo, N.1    Hu, W.2    Cross, T.A.3
  • 15
    • 0041784950 scopus 로고    scopus 로고
    • All-atom empirical potential for molecular modeling and dynamics studies of proteins
    • MacKerell AD Jr, Bashford D, Bellot M et al 1998 All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B 102:3586-3616
    • (1998) J Phys Chem B , vol.102 , pp. 3586-3616
    • MacKerell A.D., Jr.1    Bashford, D.2    Bellot, M.3
  • 16
    • 0025878348 scopus 로고
    • Location of ion-binding sites in the gramicidin channel by X-ray diffraction
    • Olah GA, Huang HW, Liu WH, Wu YL 1991 Location of ion-binding sites in the gramicidin channel by X-ray diffraction. J Mol Biol 218:847-858
    • (1991) J Mol Biol , vol.218 , pp. 847-858
    • Olah, G.A.1    Huang, H.W.2    Liu, W.H.3    Wu, Y.L.4
  • 17
    • 0000662331 scopus 로고
    • + in the gramicidin channel
    • + in the gramicidin channel. Chem Phys Lett 212:231-240
    • (1993) Chem Phys Lett , vol.212 , pp. 231-240
    • Roux, B.1
  • 18
    • 0025882246 scopus 로고
    • Ion transport in a gramicidin-like channel. Structure and thermodynamics
    • Roux B, Karplus M 1991 Ion transport in a gramicidin-like channel. Structure and thermodynamics. Biophys J 59:961-981
    • (1991) Biophys J , vol.59 , pp. 961-981
    • Roux, B.1    Karplus, M.2
  • 19
    • 0027232024 scopus 로고
    • Ion transport in the gramicidin channel: Free energy of the solvated right-handed dimer in a model membrane
    • Roux B, Karplus M 1993 Ion transport in the gramicidin channel: free energy of the solvated right-handed dimer in a model membrane. J Am Chem Soc 115:3250-3262
    • (1993) J Am Chem Soc , vol.115 , pp. 3250-3262
    • Roux, B.1    Karplus, M.2
  • 20
    • 0028321565 scopus 로고
    • Molecular dynamics simulations of the gramicidin channel
    • Roux B, Karplus M 1994 Molecular dynamics simulations of the gramicidin channel. Annu Rev Biophys Biomol Struct 23:731-761
    • (1994) Annu Rev Biophys Biomol Struct , vol.23 , pp. 731-761
    • Roux, B.1    Karplus, M.2
  • 21
    • 84986469514 scopus 로고
    • Potential energy function for cations-peptides interaction: An ab initio study
    • Roux B, Karplus M 1995 Potential energy function for cations-peptides interaction: an ab initio study. J Comp Chem 16:690-704
    • (1995) J Comp Chem , vol.16 , pp. 690-704
    • Roux, B.1    Karplus, M.2
  • 22
    • 0028918454 scopus 로고
    • Ion transport in the gramicidin channel: Molecular dynamics study of single and double occupancy
    • Roux B, Prod'hom B, Karplus M 1995 Ion transport in the gramicidin channel: molecular dynamics study of single and double occupancy. Biophys J 68:876-892
    • (1995) Biophys J , vol.68 , pp. 876-892
    • Roux, B.1    Prod'hom, B.2    Karplus, M.3
  • 23
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equation of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC 1977 Numerical integration of the cartesian equation of motion of a system with constraints: molecular dynamics of n-alkanes. J Comp Phys 23:327-341
    • (1977) J Comp Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 25
    • 0028100894 scopus 로고
    • Sodium ion binding in the gramicidin A channel. Solid-state NMR studies of the tryptophan residues
    • Separovic F, Gehrmann J, Milne T, Cornell BA, Lin SY, Smith R 1994 Sodium ion binding in the gramicidin A channel. Solid-state NMR studies of the tryptophan residues. Biophys J 67:1495-1500
    • (1994) Biophys J , vol.67 , pp. 1495-1500
    • Separovic, F.1    Gehrmann, J.2    Milne, T.3    Cornell, B.A.4    Lin, S.Y.5    Smith, R.6
  • 26
    • 0024324244 scopus 로고
    • Determination of the structure of a membrane-incorporated ion channel. Solid-state nuclear magnetic resonance studies of gramicidin A
    • Smith R, Thomas DE, Separovic F, Atkins AR, Cornell BA 1989 Determination of the structure of a membrane-incorporated ion channel. Solid-state nuclear magnetic resonance studies of gramicidin A. Biophys J 56:307-314
    • (1989) Biophys J , vol.56 , pp. 307-314
    • Smith, R.1    Thomas, D.E.2    Separovic, F.3    Atkins, A.R.4    Cornell, B.A.5
  • 28
    • 0029787815 scopus 로고    scopus 로고
    • Monovalent cation transport: Lack of structural deformation upon cation binding
    • Tian F, Lee K-C, Hu W, Cross TA 1996 Monovalent cation transport: lack of structural deformation upon cation binding. Biochemistry 35:11959-11966
    • (1996) Biochemistry , vol.35 , pp. 11959-11966
    • Tian, F.1    Lee, K.-C.2    Hu, W.3    Cross, T.A.4
  • 29
    • 0020023482 scopus 로고
    • Location of monovalent cation binding sites in the gramicidin channel
    • Urry DW, Prasad KU, Trapane TL 1982a Location of monovalent cation binding sites in the gramicidin channel. Proc Natl Acad Sci USA 79:390-394
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 390-394
    • Urry, D.W.1    Prasad, K.U.2    Trapane, T.L.3
  • 30
    • 0020465420 scopus 로고
    • Ion interactions in (1-13C)D-Val8 and D-Leu10 analogs of gramicidin A, the helix sense of the channel and location of ion binding sites
    • Urry DW, Walker JT, Trapane TL 1982b Ion interactions in (1-13C)D-Val8 and D-Leu10 analogs of gramicidin A, the helix sense of the channel and location of ion binding sites. J Membr Biol 69:225-231
    • (1982) J Membr Biol , vol.69 , pp. 225-231
    • Urry, D.W.1    Walker, J.T.2    Trapane, T.L.3
  • 31
    • 0020503050 scopus 로고
    • Is the gramicidin A transmembrane channel single-stranded or double stranded helix? A simple unequivocal determination
    • Urry DW, Trapane TL, Prasad KU 1983 Is the gramicidin A transmembrane channel single-stranded or double stranded helix? A simple unequivocal determination. Science 221:1064-1067
    • (1983) Science , vol.221 , pp. 1064-1067
    • Urry, D.W.1    Trapane, T.L.2    Prasad, K.U.3
  • 32
    • 0028020035 scopus 로고
    • Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer
    • Woolf TB, Roux B 1994 Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer. Proc Natl Acad Sci USA 91:11631-11635
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11631-11635
    • Woolf, T.B.1    Roux, B.2
  • 33
    • 0030038849 scopus 로고    scopus 로고
    • Structure, energetics, and dynamics of lipid-protein interaction: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer
    • Woolf TB, Roux B 1996 Structure, energetics, and dynamics of lipid-protein interaction: a molecular dynamics study of the gramicidin A channel in a DMPC bilayer. Proteins 24:92-114
    • (1996) Proteins , vol.24 , pp. 92-114
    • Woolf, T.B.1    Roux, B.2
  • 34
    • 0030995981 scopus 로고    scopus 로고
    • The binding site of sodium in the gramicidin-A channel. Comparison of molecular dynamics with solid-state NMR
    • Woolf TB, Roux B 1997 The binding site of sodium in the gramicidin-A channel. Comparison of molecular dynamics with solid-state NMR. Biophys J 72:1930-1945
    • (1997) Biophys J , vol.72 , pp. 1930-1945
    • Woolf, T.B.1    Roux, B.2
  • 35


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.