Base-compositional biases and the bat problem. III. The question of microchiropteran monophyly

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 353, Issue 1368, 1998, Pages 607-617

  Hutcheon, James M ^a   Kirsch, John A W ^a   Pettigrew, John D ^b  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Archonta, bat monophyly; Bat phylogeny, Microchiroptera; Molecular evolution

Indexed keywords

DNA HYBRIDIZATION; ECHOLOCATION; EVOLUTION; GENOME ANALYSIS; LINEAGE; MONOPHYLY;

CYNOCEPHALIDAE; DERMOPTERA; EMBALLONURIDAE; LEMURIDAE; MAMMALIA; METATHERIA; MICROCHIROPTERA; MOLOSSIDAE; PRIMATES; PTEROPODIDAE; SCANDENTIA; VESPERTILIONIDAE;

EID: 0032577052     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.1998.0229     Document Type: Article

References (61)

1. Adkins, R. M. & Honeycutt, R. L. 1991 Molecular phylogeny of the superorder Archonta. Proc. Natn. Acad. Sci. USA 88, 10317-10321.
2. Ammerman, L. K. & Hillis, D. M. 1992 A molecular test of bat relationships: monophyly or diphyly? Syst. Biol. 41, 222-232.
3. Bailey, W. J., Slightom, J. L. & Goodman, M. 1992 Rejection of the 'flying primate' hypothesis by phylogenetic evidence from the ∈-globin gene. Science 256, 86-89.
4. Baker, R. J., Honeycutt, R. L. & Van Den Bussche, R. A. 1991a Examination of monophyly of bats: restriction map of the ribosomal DNA cistron. In Contributions to mammalogy in honor of Karl F. Koopman. Bull. Am. Mus. Nat. Hist. 202, 42-53.
5. Baker, R. J., Novacek, M. J. & Simmons, N. B. 1991b On the monophyly of bats. Syst. Zool. 40, 216-231.
6. Beard, K. C. 1993 Origin and evolution of gliding in early Cenozoic Dermoptera (Mammalia, Primatomorpha). In Primates and their relatives in phylogenetic perspective (ed. R. D. E. MacPhee), pp. 63-90. New York: Plenum.
7. Bleiweiss, R., Kirsch, J. A. W. & Matheus, J. C. 1994 DNA hybridization evidence for subfamily structure among hummingbirds. Auk 111, 8-19.
8. Bleiweiss, R., Kirsch, J. A. W. & Matheus, J. C. 1997 DNA hybridization evidence for the principal lineages of hummingbirds (Aves: Trochilidae). Molec. Biol. Evol. 14, 325-343.
9. Bogdanowicz, W. & Owen, R. D. 1992 Phylogenetic analyses of the bat family Rhinolophidae. Z. Für Zool. Syst. Evol. 30, 142-160.
10. Bogdanowicz, W. & Owen, R. D. 1998 In the Minotaur's labyrinth: the origin of the Hipposideridae. In Bats: phylogeny, morphology, echolocation, and conservation biology (ed. T. H. Kunz & P. A. Racey). Washington, DC: Smithsonian Institution Press. (In the press.)
11. Bremer, K. 1992 Ancestral areas: a cladistic reinterpretation of the centre of origin concept. Syst. Biol. 41, 436-445.
12. Cavalli-Sforza, L. L. & Edwards, A. W. F. 1967 Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 19, 233-257.
13. Ducrocq, S., Jaeger, J.-J. & Sigé, B. 1993 Un mégachiropterère dans l'Eocerène supérior de Thaïlande incidence dans la discussion phylogénique du groupe. N. Jb. Geol. Paläont. Mh. 1993, 561-575.
14. Felsenstein, J. 1978 Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401-410.
15. Felsenstein, J. 1993 PHYLIP, phylogenetic inference package, program and documentation, version 3.5c. Seattle, WA: University of Washington.
16. Fox, G. M. & Schmid, C. W. 1980 Related single copy sequences in the human genome. Biochim. Biophys. Acta 609, 349-363.
17. Hand, S. J. & Kirsch, J. A. W. 1998 A southern origin for the Hipposideridae (Microchiroptera)? Evidence from the Australian fossil record. In Bats: phylogeny, morphology, echolocation, and conservation biology (ed. T. H. Kunz & P. A. Racey). Washington, DC: Smithsonian Institution Press. (In the press.)
18. Hershkovitz, P. 1972 The recent mammals of the neotropical region: a zoogeographic and ecological review. In Evolution, mammals, and southern continents (ed. A. Keast, F. C. Erk & B. Glass), pp. 311-431. Albany, NY: State University of New York Press.
19. Hill, J. E. & Smith, J. D. 1980 Bats: a natural history. Austin, TX: University of Texas Press.
20. Janke, A., Feldmaier-Fuchs, T., Thomas, W. K., von Haeseler, A. & Pääbo, S. 1994 The marsupial mitochondrial genome and the evolution of placental mammals. Genetics 137, 243-256.
21. Janke, A., Gemmell, N. J., Feldmaier-Fuchs, G., von Haeseler, A. & Pääbo, S. 1996 The mitochondrial genome of a nionotreme - the platypus (Ornithorhynchus anatinus). J. Molec. Evol. 42, 153-159.
22. Jepsen, G. L. 1966 Early Eocene bat from Wyoming. Science 154, 1333-1339.
23. Jepsen, G. L. 1970 Bat origins and evolution. In Biology of bats (ed. W. A. Wimsatt), pp. 1-64. New York: Academic Press.
24. Kilpatrick, C. W. & Nuñez, P. E. 1993 Monophyly of bats inferred from DNA-DNA hybridization. In Abstracts sixth international theriological congress, p. 155. Sydney: University of New South Wales.
25. Kirsch, J. A. W. & Pettigrew, J. D. 1998 Base-compositional biases and the bat problem. II. DNA hybridization trees based on AT and GC-enriched tracers. Phil. Trans. R. Soc. Lond. B 353, 381-388.
26. Kirsch, J. A. W., Springer, M. S., Krajewski, C., Archer, M., Aplin, K. & Dickerman, A. W. 1990 DNA/DNA hybridization studies of carnivorous marsupials. I. The intergeneric relationships of bandicoots (Marsupialia: Perameloidea). J. Molec. Evol. 30, 434-448.
27. Kirsch, J. A. W., Dickerman, A. W. & Reig, O. A. 1995a DNA/DNA hybridization studies of carnivorous marsupials. IV. Intergeneric relations among opossums (Didelphidae). Marmosiana 1, 57-78.
28. Kirsch, J. A. W., Flannery, T. F., Springer, M. S. & Lapointe, F.-J. 1995b Phylogeny of the Pteropodidae (Mammalia: Chiroptera) based on DNA hybridisation, with evidence for bat monophyly. Aust. J. Zool. 43, 395-428.
29. Kirsch, J. A. W., Lapointe, F.-J. & Foeste, A. 1995c Resolution of portions of the kangaroo phylogeny (Marsupialia: Macropodidae) using DNA hybridization. Biol. J. Linn. Soc. 55, 309-328.
30. Koopman, K. F. 1994 Chiroptera: systematics. Handbook of zoology, VIII, 60, Mammalia 1-217. Berlin: Walter de Gruyter.
31. Krajewski, C. & Dickerman, A. W. 1990 Bootstrap analysis of phylogenetic trees derived from DNA hybridization distances. Syst. Zool. 39, 383-390.
32. Landry, P.-A., Lapointe, F.-J. & Kirsch, J. A. W. 1996 Estimating phylogenies from lacunose distance matrices: additive is superior to ultrametric estimation. Molec. Biol. Evol. 13, 818-823.
33. Lapointe, F.-J., Kirsch, J. A. W. & Bleiweiss, R. 1994 Jackknifing of weighted trees: validation ofphylogenies reconstructed from distance matrices. Molec. Phylogenet. Evol. 3, 256-267.
34. Marshall, G. R. 1991 Statistical tests and bootstrapping: assessing the reliability of phylogenies based on distance data. Molec. Biol. Evol. 8, 386-391.
35. Mindell, D. P., Dick, C. W. & Baker, R. J. 1991 Phylogenctic relationships among megabats, microbats, and primates. Proc. Natn. Acad. Sci. USA 88, 10322-10326.
36. Norberg, U. M. & Rayner, J. M. V. 1987 Ecological morphology and flight in bats (Mammalia; Chiroptera): wing adaptations, flight performance, foraging strategy and echolocation. Phil. Trans. R. Soc. Lond. B 316, 335-427.
37. Novacek, M. J. 1985 Evidence for echolocation in the oldest known bats. Nature 315, 140-141.
38. Pettigrew, J. D. 1986 Flying primates? Megabats have the advanced pathway from eye to midbrain. Science 231, 1304-1306.
39. Pettigrew, J. D. 1991a Wings or brain? Convergent evolution in the origins of bats. Syst. Zool. 37, 199-216.
40. Pettigrew, J. D. 1991b A fruitful, wrong hypothesis? Response to Baker, Novacek and Simmons. Syst. Cool. 40, 321-239.
41. Pettigrew, J. D. 1994 Flying DNA. Curr. Biol. 4, 277-280.
42. Pettigrew, J. D. 1995 Flying primates: crashed, or crashed through? In Ecology, evolution and behaviour of bats (ed. P. A. Racey & S. M. Swift), pp. 3-26. Oxford: Clarendon Press.
43. Pettigrew, J. D. & Kirsch, J. A. W. 1998 Base-compositional biases and the bat problem. I. DNA hybridization melting curves based on AT and GC-enriched tracers. Phil. Trans. R. Soc. Lond. B 353, 369-379.
44. Pettigrew, J. D., Jamieson, B. G. M., Robson, S. K., Hall, L. S., McAnally, K. I. & Cooper, H. M. 1989 Phylogenetic relations between microbats, megabats and primates (Mammalia: Chiroptera, Primates). Phil. Trans. R. Soc. Lond. B 325, 489-559.
45. Pierson, E. D. 1986 Molecular systematics of the Microchiroptera: higher taxon relationships and biogeography. Unpublished PhD thesis, University of California, Berkeley, CA, USA.
46. Porter, C. A., Goodman, M. & Stanhope, M. J. 1996 Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand factor gene. Molec. Phylogenet. Evol. 5, 89-101.
47. Rosa, M. G. P., Pettigrew, J. D. & Cooper, H. M. 1996 Unusual pattern of retinogeniculate terminations in the controversial primate, Tarsius. Brain Behav. Evol. 48, 121-129.
48. Sarich, V. M. & Cronin, J. E. 1976 Molecular systematics of the primates. In Molecular anthropology, genes, and proteins in the evolutionary ascent of the primates (ed. M. Goodman & R. E. Tashian), pp. 141-170. New York: Plenum Press.
49. Schreiber, A., Bauer, D. & Bauer, K. 1994 Mammalian evolution from serum protein epitopes. Biol. J. Linn. Soc. 51, 359-376.
50. Sigé, B. 1993 Toward a phylogeny of bats. In Paleobiology and evolution of early Cenoyiic mammals. A symposium in honor of D. E. Russell. Poster; Fourth Congress of the European Society for Evolutionary Biology, Montpellier, France.
51. Simmons, N. B. 1994 The case for chiropteran monophyly. Am. Mus. Novitates 3103, 1-54.
52. Simmons, N. B. 1998 Higher-level relationships of microchiropteran bats. In Bats: phylogeny, morphology, echolocation, and conservation biology (ed. T. H. Kunz & P. A. Racey). Washington, DC: Smithsonian Institution Press. (In the press.)
53. Simmons, N. B., Novacek, M. J. & Baker, R. B. 1991 Approaches, methods, and the future of the chiropteran monophyly controversy. Syst. Zool. 40, 239-243.
54. Smith, A. B. 1994 Rooting molecular trees: problems and strategies. Biol. J. Linn. Soc. 51, 279-292.
55. Smith, J. D. 1977 Comments on flight and the evolution of bats. In Major patterns in vertebrate evolution (ed. M. K. Hecht, P. C. Goody & B. M. Hecht), pp. 427-438. New York: Plenum.
56. Smith, J. D. & Madkour, G. 1980 Penial morphology and the question of chiropteran phylogeny. In Proceedings fifth international bat research conference (ed. D. E. Wilson & A. L. Gardner), pp. 347-365. Lubbock, TX: Texas Tech Press.
57. Speakman, J. R., Anderson, M. E. & Racey, P. A. 1989 The energy cost of echolocation in pipistrelle bats (Pipistrellus pipistrellus). J. Comp. Phys. A165, 679-686.
58. Springer, M. S. & Kirsch, J. A. W. 1991 DNA hybridization, the compression effect, and the radiation of diprotodontian marsupials. Syst. Zool. 40, 131-151.
59. Stanhope, M. J., Bailey, W. J., Czelusniak, J., Goodman, M., Si, J.-S., Nickerson, J., Sgouros, J. G., Singer, G. A. M. & Kleinschmidt, T. K. 1993 A molecular view of primate supraordinal relationships from the analysis of both nucleotide and amino acid sequences. In Primates and their relatives in phylogenetic perspective (ed. R. D. E. MacPhee), pp. 251-292. New York: Plenum Press.
60. Swofford, D. L. & Olsen, G. J. 1990 Phylogeny reconstruction. In Molecular systematics (ed. D. M. Hillis & G. Moritz), pp. 411-501. Sunderland, MA: Sinauer Associates, Inc.
61. Thewissen, J. G. & Babcock, S. K. 1991 Distinctive cranial and cervical innervation of wing muscles: new evidence for bat monophyly. Science 252, 934-936.