Establishment of framework P1 clones for map-based cloning and genome sequencing: Direct RFLP mapping of large clones

Gene

Volumn 225, Issue 1-2, 1998, Pages 31-38

  Shibata, Daisuke ^a   Seki, Motoaki ^b   Mitsukawa, Norihiro ^a   Hayashida, Nobuaki ^b,d   Ito, Takuya ^b   Taji, Teruaki ^b   Tsuge, Tomohiko ^b,e   Matsui, Minami ^b   Anai, Toyoaki ^c   Liu, Yao Guang ^a,f   Whittier, Robert F ^a,g   Shinozaki, Kazuo ^b  

^a Mitsui Plant Biotech Res Institute   (Japan)

^b INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

^c SAGA UNIVERSITY   (Japan)

^d SHINSHU UNIVERSITY   (Japan)

^e YALE UNIVERSITY   (United States)

^f SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^g Amersham Pharmacia Biotech KK   (Japan)

Author keywords

Arabidopsis thaliana; DNA marker; Linkage map; P1 library

Indexed keywords

ARABIDOPSIS; ARTICLE; CHROMOSOME MAP; ESCHERICHIA COLI; GENE MAPPING; GENE SEQUENCE; GENETIC LINKAGE; GENOME; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL;

ARABIDOPSIS; BACTERIOPHAGE P1; CHROMOSOME MAPPING; CHROMOSOME WALKING; CLONING, MOLECULAR; CONTIG MAPPING; DNA, PLANT; GENETIC MARKERS; GENETIC VECTORS; GENOME, PLANT; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0032576566     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00534-4     Document Type: Article

References (12)

1. Birnboim, H.C., 1983. A rapid alkaline extraction method for the isolation of plasmid DNA. In: Wu, R., Grossman, L., Moldave, K. (Eds.), Methods in Enzymology. Academic Press, San Diego, CA, Vol. 100, pp. 243-255.
2. Chang C., Bowman J.L., DeJohn A.W., Lander E.S., Meyerowitz E.M. Restriction fragment length polymorphism linkage map for A. thaliana. Proc. Natl. Acad. Sci. USA. 85:1988;6856-6860.
3. Carle G.F., Frank M., Olson M.V. Electrophoretic separations of large DNA molecules by periodic inversion of the electric field. Science. 232:1986;65-68.
4. Hauge B.M., Hanley S., Giraudat J., Goodman H.M. Mapping the Arabidopsis genome. Symp. Soc. Exp. Biol. 45:1991;45-56.
5. Lander E.S., Green P., Abrahamson J., Barlow A., Day M.J., Lincoln S.E., NewBerg L. Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics. 1:1987;174-181.
6. Lister C., Dean C. Recombinant inbred lines for mapping RFLP and phenotypic markers in A. thaliana. Plant J. 4:1993;745-750.
7. Liu Y.-G., Mitsukawa N., Vazquez-Tello A., Whittier R.F. Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking. Plant J. 7:1995;351-358.
8. Liu Y.-G., Mitsukawa N., Lister C., Dean C., Whittier R.F. Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines. Plant J. 10:1996;733-736.
9. Nam H.-G., Giraudat J., den Boer B., Moonan F., Loos W.D.B., Hauge B.M., Goodman H. Restriction fragment length polymorphism linkage map of Arabidopsis thaliana. Plant Cell. 1:1989;699-705.
10. Pierce, J.C., Sternberg, N., 1992. Using the bacteriophage P1 system to clone high molecular weight (HMW) genomic DNA. In: Wu, R. (Ed.), Methods in Enzymology. Academic Press, San Diego, CA, Vol. 216, pp. 549-574.
11. Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M., Miyajima N., Tabata S. Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones. DNA Res. 4:1997;215-230.
12. Subak-Sharpe H., Burke R.R., Crawford L.V., Morrison J.M., Hay J., Keir H.M. An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences. Cold Spring Harbor Symp. 31:1966;737.