Translationally repressive RNA structures monitored in vivo using temperate DNA bacteriophages

Gene

Volumn 210, Issue 1, 1998, Pages 135-142

  Fouts, Derrick E ^a   Celander, Daniel W ^a  

^a NONE

Author keywords

HIV 1 Rev; P22; R17 MS2 coat protein; RBS; RNA genetics; RRE; Translational initiation region

Indexed keywords

BACTERIAL PROTEIN; BACTERIOPHAGE DNA; COAT PROTEIN; GENE PRODUCT; REV PROTEIN; RNA BINDING PROTEIN; VIRUS PROTEIN;

ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; GENETIC SELECTION; HUMAN IMMUNODEFICIENCY VIRUS 1; LYSOGENIZATION; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN SYNTHESIS; RNA SEQUENCE; RNA STRUCTURE; TRANSLATION INITIATION;

BACTERIA (MICROORGANISMS); FORMICIDAE; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; UNIDENTIFIED BACTERIOPHAGE;

EID: 0032571452     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00066-3     Document Type: Article

References (23)

1. Bullock W.O., Fernandez J.M., Short J.M. XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. Biotechniques. 5:1987;376-379.
2. de Smit M.H., van Duin J. Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis. Proc. Natl. Acad. Sci. USA. 87:1990;7668-7672.
3. Fouts D.E., Celander D.W. Improved method for selecting RNA-binding activities in vivo. Nucleic Acids Res. 24:1996;1582-1584.
4. Fouts D.E., True H.L., Celander D.W. Functional recognition of fragmented operator sites by R17/MS2 coat protein, a translational repressor. Nucleic Acids Res. 25:1997;4464-4473.
5. Gait M.J., Karn J. RNA recognition by the human immunodeficiency virus Tat and Rev proteins. Trends Biochem. Sci. 18:1993;255-259.
6. Harada K., Martin S.S., Frankel A.D. Selection of RNA-binding peptides in vivo. Nature. 380:1996;175-179.
7. Iwai S., Pritchard C., Mann D.A., Karn J., Gait M.J. Recognition of the high affinity binding site in Rev-response element RNA by the human immunodeficiency virus type-1 Rev protein. Nucleic Acids Res. 20:1992;6465-6472.
8. Kunkel T.A., Bebenek K., McClary J. Efficient site-directed mutagenesis using uracil containing DNA. Methods Enzymol. 204:1991;125-139.
9. MacWilliams M.P., Celander D.W., Gardner J.F. Direct genetic selection for a specific RNA-protein interaction. Nucleic Acids Res. 21:1993;5754-5760.
10. Peabody D. Translational repression by bacteriophage MS2 coat protein expressed from a plasmid. A system for genetic analysis of a protein-RNA interaction. J. Biol. Chem. 265:1990;5684-5689.
11. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning - A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
12. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
13. Sauer R.T., Krovatin W., DeAnda J., Youderian P., Susskind M.M. Primary structure of the immI immunity region of bacteriophage P22. J. Mol. Biol. 168:1983;699-713.
14. R (exo-) DNA polymerase. Biotechniques. 13:1992;626-633.
15. SenGupta D.J., Zhang B., Kraemer B., Pochart P., Fields S., Wickens M. A three-hybrid system to detect RNA-protein interactions in vivo. Proc. Natl. Acad. Sci. USA. 93:1996;8496-8501.
16. Serra M.J., Turner D.H. Predicting thermodynamic properties of RNA. Methods Enzymol. 259:1995;242-261.
17. Susskind M.M. A new gene of bacteriophage P22 which regulates synthesis of antirepressor. J. Mol. Biol. 138:1980;685-713.
18. Susskind M.M., Botstein D. Mechanism of action of Salmonella phage P22 antirepressor. J. Mol. Biol. 98:1975;413-424.
19. Susskind, M., Youderian, P., 1983. Bacteriophage P22 Antirepressor and its control. In: Hendrix, R.W., Roberts, J.W., Stahl, F.W., Weisberg, R.A. (Eds.), Lambda II. Cold Spring Harbor University Press, Cold Spring Harbor, NY, pp. 347-363.
20. Vershon A.K., Liao S.M., McClure W.R., Sauer R.T. Bacteriophage P22 Mnt repressor. DNA binding and effects on transcription in vitro. J. Mol. Biol. 195:1987;311-322.
21. Vershon A.K., Youderian P., Susskind M.M., Sauer R.T. The bacteriophage P22 arc and mnt repressors. Overproduction, purification, and properties. J. Biol. Chem. 260:1985;12124-12129.
22. Wang S., True H.L., Seitz E.M., Bennett K.A., Fouts D.E., Gardner J.F., Celander D.W. Direct genetic selection of two classes of R17/MS2 coat proteins with altered capsid assembly properties and expanded RNA-binding activities. Nucleic Acids Res. 25:1997;1649-1657.
23. Witherell G.W., Gott J.M., Uhlenbeck O.C. Specific interactions between RNA phage coat proteins and RNA. Prog. Nucleic Acid Res. Mol. Biol. 40:1991;185-220.