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Volumn 276, Issue 3, 1998, Pages 547-557

Mutations in the leader region of ribosomal RNA operons cause structurally defective 30 S ribosomes as revealed by in vivo structural probing

Author keywords

16 S rRNA structure; 30 S ribosomes; In vivo structural probing; Leader mutations; RNA folding

Indexed keywords

DIMETHYL SULFATE; RIBOSOME PROTEIN; RIBOSOME RNA;

EID: 0032570536     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1556     Document Type: Article
Times cited : (16)

References (36)
  • 1
    • 0018617661 scopus 로고
    • Plasmids of E. coli as cloning vectors
    • Bolivar F., Backman K. Plasmids of E. coli as cloning vectors. Methods Enzymol. 68:1979;245-267.
    • (1979) Methods Enzymol. , vol.68 , pp. 245-267
    • Bolivar, F.1    Backman, K.2
  • 2
    • 0024278056 scopus 로고
    • A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit
    • Brimacombe R., Atmadja J., Stiege W., Schüler D. A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit. J. Mol. Biol. 199:1988;115-136.
    • (1988) J. Mol. Biol. , vol.199 , pp. 115-136
    • Brimacombe, R.1    Atmadja, J.2    Stiege, W.3    Schüler, D.4
  • 3
    • 0027246623 scopus 로고
    • Formation of the central pseudoknot in 16 S rRNA is essential for initiation of translation
    • Brink F. M., Verbeet M. P., deBoer H. A. Formation of the central pseudoknot in 16 S rRNA is essential for initiation of translation. EMBO J. 12:1993;3987-3996.
    • (1993) EMBO J. , vol.12 , pp. 3987-3996
    • Brink, F.M.1    Verbeet, M.P.2    Deboer, H.A.3
  • 5
    • 0027273672 scopus 로고
    • A cold-sensitive mutation in the 16 S rRNA provides evidence for a helical switching in ribosome assembly
    • Dammel C. S., Noller H. F. A cold-sensitive mutation in the 16 S rRNA provides evidence for a helical switching in ribosome assembly. Genes Dev. 7:1993;660-670.
    • (1993) Genes Dev. , vol.7 , pp. 660-670
    • Dammel, C.S.1    Noller, H.F.2
  • 6
    • 0031114639 scopus 로고    scopus 로고
    • Formation of the 5′ end pseudoknot in small subunit ribosomal RNA: Involvement of U3-like sequences
    • Dennis P. P., Russell A. G., De Sa M. M. Formation of the 5′ end pseudoknot in small subunit ribosomal RNA: involvement of U3-like sequences. RNA. 3:1997;337-343.
    • (1997) RNA , vol.3 , pp. 337-343
    • Dennis, P.P.1    Russell, A.G.2    De Sa, M.M.3
  • 8
    • 0019489063 scopus 로고
    • An improved method for two-dimensional gel-electrophoresis: Analysis of mutationally altered ribosomal proteins ofE. coli
    • Geyl D., Böck A., Isono K. An improved method for two-dimensional gel-electrophoresis: analysis of mutationally altered ribosomal proteins ofE. coli. Mol. Gen. Genet. 181:1981;309-312.
    • (1981) Mol. Gen. Genet. , vol.181 , pp. 309-312
    • Geyl, D.1    Böck, A.2    Isono, K.3
  • 9
    • 0028261409 scopus 로고
    • Lessons from an evolving ribosomal RNA: 16 S and 23 S ribosomal RNA structures from a comparative perspective
    • Gutell R. R., Larsen N., Woese C. R. Lessons from an evolving ribosomal RNA: 16 S and 23 S ribosomal RNA structures from a comparative perspective. Microbiol. Rev. 58:1994;10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 10
    • 0017159814 scopus 로고
    • Structural dynamics of bacterial ribosomes. IV. Classification of ribosomes by subunit interaction
    • Hapke B., Noll H. Structural dynamics of bacterial ribosomes. IV. Classification of ribosomes by subunit interaction. J. Mol. Biol. 105:1976;97-109.
    • (1976) J. Mol. Biol. , vol.105 , pp. 97-109
    • Hapke, B.1    Noll, H.2
  • 11
    • 0030596520 scopus 로고    scopus 로고
    • Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA
    • Hughes J. M. X. Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA. J. Mol. Biol. 259:1996;645-654.
    • (1996) J. Mol. Biol. , vol.259 , pp. 645-654
    • Hughes, J.M.X.1
  • 12
    • 0026752210 scopus 로고
    • In vivo chemical footprinting of the Escherichia coli ribosome
    • Laughrea M., Tam J. In vivo chemical footprinting of the Escherichia coli ribosome. Biochemistry. 31:1992;12035-12041.
    • (1992) Biochemistry , vol.31 , pp. 12035-12041
    • Laughrea, M.1    Tam, J.2
  • 13
    • 0022422352 scopus 로고
    • Conformation of yeast 18 S rRNA. Direct chemical probing of the 5′ domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulphate-accessible sites
    • Lempereur L., Nicoloso M., Riehl N., Ehresmann C., Ehresmann B., Bachellerie J. P. Conformation of yeast 18 S rRNA. Direct chemical probing of the 5′ domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulphate-accessible sites. Nucl. Acids Res. 13:1985;8339-8357.
    • (1985) Nucl. Acids Res. , vol.13 , pp. 8339-8357
    • Lempereur, L.1    Nicoloso, M.2    Riehl, N.3    Ehresmann, C.4    Ehresmann, B.5    Bachellerie, J.P.6
  • 15
    • 0030941228 scopus 로고    scopus 로고
    • Context dependent RNA-RNA recognition in a three-dimensional model of the 16 S rRNA core
    • Masquida B., Felden B., Westhof E. Context dependent RNA-RNA recognition in a three-dimensional model of the 16 S rRNA core. Bioorg. Med. Chem. 5:1997;1021-1035.
    • (1997) Bioorg. Med. Chem. , vol.5 , pp. 1021-1035
    • Masquida, B.1    Felden, B.2    Westhof, E.3
  • 17
    • 0024814177 scopus 로고
    • Conformational alterations in the ermC transcript in vivo during induction
    • Mayford M., Weisblum B. Conformational alterations in the ermC transcript in vivo during induction. EMBO J. 8:1989;4307-4314.
    • (1989) EMBO J. , vol.8 , pp. 4307-4314
    • Mayford, M.1    Weisblum, B.2
  • 18
    • 0003785155 scopus 로고
    • Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
    • Miller J. H. Experiments in Molecular Genetics. 1972;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 19
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes
    • Moazed D., Noller H. F. Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes. Cell. 47:1986;985-994.
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 20
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16 S ribosomal RNA
    • Moazed D., Noller H. F. Interaction of antibiotics with functional sites in 16 S ribosomal RNA. Nature. 327:1987;389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 21
    • 0022980288 scopus 로고
    • Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA
    • Moazed D., Van Stolk B. J., Douthwaite S., Noller H. F. Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA. J. Mol. Biol. 191:1986;483-493.
    • (1986) J. Mol. Biol. , vol.191 , pp. 483-493
    • Moazed, D.1    Van Stolk, B.J.2    Douthwaite, S.3    Noller, H.F.4
  • 22
    • 0023898319 scopus 로고
    • Ring-opened 7-methylguanine residues in DNA are a block to in vitro DNA synthesis
    • O'Connor T. R., Boiteux S., Laval J. Ring-opened 7-methylguanine residues in DNA are a block to in vitro DNA synthesis. Nucl. Acids Res. 16:1988;5879-5894.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 5879-5894
    • O'Connor, T.R.1    Boiteux, S.2    Laval, J.3
  • 23
    • 0028957034 scopus 로고
    • The Escherichia coli ribosomal RNA leader nut region interacts specifically with mature 16 S RNA
    • Pardon B., Wagner R. The Escherichia coli ribosomal RNA leader nut region interacts specifically with mature 16 S RNA. Nucl. Acids Res. 23:1995;932-941.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 932-941
    • Pardon, B.1    Wagner, R.2
  • 24
    • 0028121454 scopus 로고
    • The Escherichia coli ribosomal RNA leader: A structural and functional investigation
    • Pardon B., Thelen L., Wagner R. The Escherichia coli ribosomal RNA leader: a structural and functional investigation. Biol. Chem. Hoppe Seyler. 375:1994;11-20.
    • (1994) Biol. Chem. Hoppe Seyler , vol.375 , pp. 11-20
    • Pardon, B.1    Thelen, L.2    Wagner, R.3
  • 25
    • 0029816163 scopus 로고    scopus 로고
    • The central pseudoknot in 16 S ribosomal RNA is needed for ribosome stability but is not essential for 30 S initiation complex formation
    • Poot R. A., Pleij C. W. A., van Duin J. The central pseudoknot in 16 S ribosomal RNA is needed for ribosome stability but is not essential for 30 S initiation complex formation. Nucl. Acids Res. 24:1996;3670-3676.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 3670-3676
    • Poot, R.A.1    Pleij, C.W.A.2    Van Duin, J.3
  • 26
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA
    • Powers T., Noller H. F. Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA. RNA. 1:1995a;194-209.
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 27
    • 0028800665 scopus 로고
    • A temperature-dependent conformational rearrangement in the ribosomal protein S4-16 S rRNA complex
    • Powers T., Noller H. F. A temperature-dependent conformational rearrangement in the ribosomal protein S4-16 S rRNA complex. J. Biol. Chem. 270:1995b;1238-1242.
    • (1995) J. Biol. Chem. , vol.270 , pp. 1238-1242
    • Powers, T.1    Noller, H.F.2
  • 28
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in rRNA genes of Escherichia coli
    • Sigmund C. D., Ettayebi M., Borden A., Morgan E. A. Antibiotic resistance mutations in rRNA genes of Escherichia coli. Methods Enzymol. 164:1988;673-690.
    • (1988) Methods Enzymol. , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4
  • 29
    • 0019984269 scopus 로고
    • Site-directed mutagenesis of ribosomal RNA. Analysis of ribosomal RNA deletion mutants using maxicells
    • Stark M. J. R., Gourse R. L., Dahlberg A. E. Site-directed mutagenesis of ribosomal RNA. Analysis of ribosomal RNA deletion mutants using maxicells. J. Mol. Biol. 159:1982;417-439.
    • (1982) J. Mol. Biol. , vol.159 , pp. 417-439
    • Stark, M.J.R.1    Gourse, R.L.2    Dahlberg, A.E.3
  • 30
    • 0029591131 scopus 로고
    • Small RNA chaperones for ribosome biogenesis
    • Steitz J. A., Tycowski K. T. Small RNA chaperones for ribosome biogenesis. Science. 270:1995;1626-1627.
    • (1995) Science , vol.270 , pp. 1626-1627
    • Steitz, J.A.1    Tycowski, K.T.2
  • 31
    • 0024293439 scopus 로고
    • Model for the three-dimensional folding of 16 S ribosomal RNA
    • Stern S., Weiser B., Noller H. F. Model for the three-dimensional folding of 16 S ribosomal RNA. J. Mol. Biol. 204:1988;447-481.
    • (1988) J. Mol. Biol , vol.204 , pp. 447-481
    • Stern, S.1    Weiser, B.2    Noller, H.F.3
  • 32
    • 0025193855 scopus 로고
    • Lstructure within the leader region of Escherichia coli ribosomal RNA operons has post-transcriptional functions
    • Lstructure within the leader region of Escherichia coli ribosomal RNA operons has post-transcriptional functions. Nucl. Acids Res. 18:1990;3893-3901.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 3893-3901
    • Theißen, G.1    Eberle, J.2    Zacharias, M.3    Tobias, L.4    Wagner, R.5
  • 33
    • 0027493765 scopus 로고
    • Some base substitutions in the leader of an E. coli ribosomal RNA operon affect the structure and function of ribosomes: Evidence for a transient molecular scaffold-like function of the rRNA leader
    • Theißen G., Thelen L., Wagner R. Some base substitutions in the leader of an E. coli ribosomal RNA operon affect the structure and function of ribosomes: evidence for a transient molecular scaffold-like function of the rRNA leader. J. Mol. Biol. 233:1993;203-218.
    • (1993) J. Mol. Biol. , vol.233 , pp. 203-218
    • Theißen, G.1    Thelen, L.2    Wagner, R.3
  • 34
    • 0030589668 scopus 로고    scopus 로고
    • Trans-acting factors in ribosome synthesis
    • Tollervey D. Trans-acting factors in ribosome synthesis. Exp. Cell Res. 229:1996;226-232.
    • (1996) Exp. Cell Res. , vol.229 , pp. 226-232
    • Tollervey, D.1
  • 36
    • 0024434016 scopus 로고
    • S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region
    • Vartikar J. V., Draper D. E. S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region. J. Mol. Biol. 209:1989;221-234.
    • (1989) J. Mol. Biol. , vol.209 , pp. 221-234
    • Vartikar, J.V.1    Draper, D.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.