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-1 before filtration through Whatman GF/F filters. The activity on the filters, together with DIC concentration, obtained from infrared analysis of gas-sparged samples, was used to compute photosynthetic rates. Samples for bacterial activity were incubated with 20 nM thymidine for 20 hours at 1°C in the dark followed by the addition of cold trichloroacetic acid (5% final concentration); samples were filtered on 0.2-μm filters for determination of isotopic incorporation.
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-1 before filtration through Whatman GF/F filters. The activity on the filters, together with DIC concentration, obtained from infrared analysis of gas-sparged samples, was used to compute photosynthetic rates. Samples for bacterial activity were incubated with 20 nM thymidine for 20 hours at 1°C in the dark followed by the addition of cold trichloroacetic acid (5% final concentration); samples were filtered on 0.2-μm filters for determination of isotopic incorporation.
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3543034274
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note
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The vertical offset between microbial biomass and activity maxima in Fig. 1, C and D, reflects variation between core samples and core length used for the analyses (14-cm core sections were used for data in Fig. 1, A to C; 30-cm sections were used for data in Fig. 1D). Because sediment aggregates occurred in relatively compact layers, rates would be higher if measured on shorter core sections incorporating the sediment layer only.
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11
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0024553747
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DNA was extracted from sediments in the lake ice with guanidinium isothiocyanate [D. G. Pitcher, N. A. Saunders, R. J. Owen, Lett Appl. Microbiol. 8, 151 (1989)]. Bacterial 16S ribosomal RNA primers 27F and 1522R [D. J. Lane, in Nucleic Acid Techniques in Bacterial Systematics, E. Stackebrandt and M. Goodfellow, Eds. (Wiley, New York, 1991), pp. 115-148] were used for the polymerase chain reaction (PCR) [R. K. Saiki et al., Science 239, 487 (1988)]. The amplicons were cloned into the vector PCR II (Invitrogen) and bidirectionally sequenced with dye terminator chemistry on an ABI 377 automated sequencer (Applied Biosystems, Foster City, CA). The tree in Fig. 3 was inferred from a sequence mask of 966 positions by the neighbor-joining [N. Saitou and M. Nei, Mol. Biol. Evol. 4, 406 (1987)] and parsimony methods [J. Felsenstein, PHYLIP (University of Washington, Seattle, 1991)].
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Pitcher, D.G.1
Saunders, N.A.2
Owen, R.J.3
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12
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0001857117
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E. Stackebrandt and M. Goodfellow, Eds. Wiley, New York
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DNA was extracted from sediments in the lake ice with guanidinium isothiocyanate [D. G. Pitcher, N. A. Saunders, R. J. Owen, Lett Appl. Microbiol. 8, 151 (1989)]. Bacterial 16S ribosomal RNA primers 27F and 1522R [D. J. Lane, in Nucleic Acid Techniques in Bacterial Systematics, E. Stackebrandt and M. Goodfellow, Eds. (Wiley, New York, 1991), pp. 115-148] were used for the polymerase chain reaction (PCR) [R. K. Saiki et al., Science 239, 487 (1988)]. The amplicons were cloned into the vector PCR II (Invitrogen) and bidirectionally sequenced with dye terminator chemistry on an ABI 377 automated sequencer (Applied Biosystems, Foster City, CA). The tree in Fig. 3 was inferred from a sequence mask of 966 positions by the neighbor-joining [N. Saitou and M. Nei, Mol. Biol. Evol. 4, 406 (1987)] and parsimony methods [J. Felsenstein, PHYLIP (University of Washington, Seattle, 1991)].
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, pp. 115-148
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Lane, D.J.1
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13
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0023850178
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Applied Biosystems, Foster City, CA
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DNA was extracted from sediments in the lake ice with guanidinium isothiocyanate [D. G. Pitcher, N. A. Saunders, R. J. Owen, Lett Appl. Microbiol. 8, 151 (1989)]. Bacterial 16S ribosomal RNA primers 27F and 1522R [D. J. Lane, in Nucleic Acid Techniques in Bacterial Systematics, E. Stackebrandt and M. Goodfellow, Eds. (Wiley, New York, 1991), pp. 115-148] were used for the polymerase chain reaction (PCR) [R. K. Saiki et al., Science 239, 487 (1988)]. The amplicons were cloned into the vector PCR II (Invitrogen) and bidirectionally sequenced with dye terminator chemistry on an ABI 377 automated sequencer (Applied Biosystems, Foster City, CA). The tree in Fig. 3 was inferred from a sequence mask of 966 positions by the neighbor-joining [N. Saitou and M. Nei, Mol. Biol. Evol. 4, 406 (1987)] and parsimony methods [J. Felsenstein, PHYLIP (University of Washington, Seattle, 1991)].
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Saiki, R.K.1
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14
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0023375195
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DNA was extracted from sediments in the lake ice with guanidinium isothiocyanate [D. G. Pitcher, N. A. Saunders, R. J. Owen, Lett Appl. Microbiol. 8, 151 (1989)]. Bacterial 16S ribosomal RNA primers 27F and 1522R [D. J. Lane, in Nucleic Acid Techniques in Bacterial Systematics, E. Stackebrandt and M. Goodfellow, Eds. (Wiley, New York, 1991), pp. 115-148] were used for the polymerase chain reaction (PCR) [R. K. Saiki et al., Science 239, 487 (1988)]. The amplicons were cloned into the vector PCR II (Invitrogen) and bidirectionally sequenced with dye terminator chemistry on an ABI 377 automated sequencer (Applied Biosystems, Foster City, CA). The tree in Fig. 3 was inferred from a sequence mask of 966 positions by the neighbor-joining [N. Saitou and M. Nei, Mol. Biol. Evol. 4, 406 (1987)] and parsimony methods [J. Felsenstein, PHYLIP (University of Washington, Seattle, 1991)].
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Saitou, N.1
Nei, M.2
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15
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0343808303
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University of Washington, Seattle
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DNA was extracted from sediments in the lake ice with guanidinium isothiocyanate [D. G. Pitcher, N. A. Saunders, R. J. Owen, Lett Appl. Microbiol. 8, 151 (1989)]. Bacterial 16S ribosomal RNA primers 27F and 1522R [D. J. Lane, in Nucleic Acid Techniques in Bacterial Systematics, E. Stackebrandt and M. Goodfellow, Eds. (Wiley, New York, 1991), pp. 115-148] were used for the polymerase chain reaction (PCR) [R. K. Saiki et al., Science 239, 487 (1988)]. The amplicons were cloned into the vector PCR II (Invitrogen) and bidirectionally sequenced with dye terminator chemistry on an ABI 377 automated sequencer (Applied Biosystems, Foster City, CA). The tree in Fig. 3 was inferred from a sequence mask of 966 positions by the neighbor-joining [N. Saitou and M. Nei, Mol. Biol. Evol. 4, 406 (1987)] and parsimony methods [J. Felsenstein, PHYLIP (University of Washington, Seattle, 1991)].
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(1991)
PHYLIP
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Felsenstein, J.1
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20
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3543046402
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unpublished data
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2 quadrants were collected and weighed; subsamples were analyzed for POC with an elemental analyzer. These surface sediments represent aeolian deposition that had accumulated before direct sunlight and elevated temperatures induced melting when winds were highest in the area (12). Wind-blown sediment deposition is highest during this period (J. C. Priscu et al., unpublished data) and provides an estimate of annual deposition. Replicate sediment traps (22.5-cm opening) containing 5% formalin were deployed beneath the ice for 1 year. Collected sediments were rinsed, dried, and weighed. A sediment portion was acidified with 6 M HCI, redried, and analyzed for POC.
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Priscu, J.C.1
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0028163268
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0029659602
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Carr, M.H.1
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3543005584
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note
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We thank T. Meuwissen for field assistance. Supported by the NSF (OPP 94-19423 and OPP 92-11773).
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