Energetic roles of hydrogen bonds at the ureido oxygen binding pocket in the streptavidin-biotin complex

Biochemistry

Volumn 37, Issue 21, 1998, Pages 7657-7663

  Klumb, Lisa A ^a   Chu, Vano ^a   Stayton, Patrick S ^a,b  

^a University of Washington   (United States)

^b AMGEN INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTIN; STREPTAVIDIN;

ARTICLE; COMPLEX FORMATION; ENTHALPY; ENTROPY; ENZYME SUBSTRATE COMPLEX; HYDROGEN BOND; MOLECULAR INTERACTION; OXYGEN AFFINITY; PRIORITY JOURNAL; PROTEIN STRUCTURE; SITE DIRECTED MUTAGENESIS; STRUCTURE ACTIVITY RELATION; TEMPERATURE DEPENDENCE;

BACTERIAL PROTEINS; BINDING, COMPETITIVE; BIOTIN; HYDROGEN BONDING; KINETICS; MUTAGENESIS, SITE-DIRECTED; OXYGEN; PROTEIN BINDING; THERMODYNAMICS; UREA;

EID: 0032568575     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9803123     Document Type: Article

References (36)

1. Freitag, S., LeTrong, I., Klumb, L., Stayton, P., and Stenkamp, R. E. (1997) Protein Sci. 6, 1157-1166.
2. Hendrickson, W. A., Pahler, A., Smith, J. L., Satow, Y., Merritt, E. A., and Phizackerley, R. P. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 2190-2194.
3. Livnah, O., Bayer, E. A., Wilchek, M., and Sussman, J. L. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 5076-5080.
4. Pugliese, L., Coda, A., Malcovati, M., and Bolognesi, M. (1993) J. Mol. Biol. 231, 698-710.
5. Weber, P. C., Ohlendorf, D. H., Wendoloski, J. J., and Salemme, F. R. (1989) Science 243, 85-88.
6. Bibbins, K. B., Boeuf, H., and Varmus, H. E. (1993) Mol. Cell. Biol. 13, 7278-7287.
7. Hibbits, K. A., Gill, D. S., and Willson, R. C. (1994) Biochemistry 33, 3584-3590.
8. Kelley, R. F., Costas, K. E., O'Connell, M. P., and Lazarus, R. A. (1995) Biochemistry 34, 10383-10392.
9. Middleton, S. A., Johnson, D. L., Jin, R., McMahon, F. J., Collins, A., Tullai, J., Groninger, R. H., Jolliffe, L. K., and Mulcahy, L. S. (1996) J. Biol. Chem. 271, 14045-14054.
10. Sudol, M., Chen, H. I., Bougeret, C., Einbond, A., and Bork, P. (1995) FEBS Lett. 369, 67-71.
11. Basran, J., Casarotto, M. G., Barsukov, I. L., and Roberts, G. C. K. (1995) Biochemistry 34, 2872-2882.
12. Carlow, D. C., Smith, A. A., Yang, C. C., Short, S. A., and Wolfenden, R. (1995) Biochemistry 34, 4220-4224.
13. Hayashi, H., Inoue, K., Mizuguchi, H., and Kagamiyama, H. (1996) Biochemistry 35, 6754-6761.
14. Krebs, J. F., Ippolito, J. A., Christianson, D. W., and Fierke, C. A. (1993) J. Biol. Chem. 268, 27458-27466.
15. Tsumoto, K., Ueda, Y., Maenaka, K., Watanabe, K., Ogasahara, K., Yutani, K., and Kumagai, I. (1994) J. Biol. Chem. 269, 28777-29782.
16. Yano, T., Mizuno, T., and Kagamiyama, H. (1993) Biochemistry 32, 1810-1815.
17. Falzone, C. J., Wright, P. E., and Benkovic, S. J. (1994) Biochemistry 33, 439-442.
18. Kempner, E. S. (1993) FEBS Lett. 326, 4-10.
19. Sampson, N. S., and Knowles, J. R. (1992) Biochemistry 31, 8482-8487.
20. Chilkoti, A., Tan, P. H., and Stayton, P. S. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 1754-1758.
21. Chilkoti, A., and Stayton, P. S. (1995) J. Am. Chem. Soc. 117, 10622-10628.
22. Miyamoto, S., and Kollman, P. A. (1993) Proteins: Struct., Funct., Genet. 16, 226-245.
23. Green, N. M. (1962) Biochim. Biophys. Acta 59, 244-246.
24. Weber, P. C., Wendoloski, J. J., Pantoliano, M. W., and Salemme, F. R. (1992) J. Am. Chem. Soc. 114, 3197-3200.
25. Green, N. M. (1963) Biochem. J. 89, 585-591.
26. Eyring, H. J. (1935) J. Chem. Phys. 3, 107-115.
27. Evans, M. G., and Polanyi, M. (1935) Trans. Faraday Soc. 31, 875-894.
28. Fersht, A. R., Shi, J.-P., Jack, K.-J., Lowe, D. M., and Wilkinson, A. J. (1985) Nature 314, 235-238.
29. Rose, G. D. and Wolfenden, R. (1993) Annu. Rev. Biophys. Bimol. Struct. 22, 381-415.
30. Habermann, S. M. and Murphy, K. P. (1996) Protein Sci. 5, 1229-1239.
31. Doig, A. J., and Williams, D. H. (1992) J. Am. Chem. Soc. 114, 338-343.
32. Connelly, P. R., Aldape, R. A., Bruzzese, F. J., Chambers, S. P., Fitzgibbon, M. J., Fleming, M. A., Itoh, S., Livingston, D. J., Navia, M. A., Thomson, J. A., and Wilson, K. P. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 1964-1968.
33. Morag, E., Bayer, E. A., and Wilchek, M. (1996) Biochem. J. 316, 193-199.
34. Marchaj, A., Jacobsen, D. W., Savon, S. R., and Brown, K. L. (1995) J. Am. Chem. Soc. 117, 11640-11646.
35. Morelock, M. M., Pargellis, C. A., Graham, E. T., Lamarre, D., and Jung, G. (1995) J. Med. Chem. 38, 1751-1761.
36. Xu, Y., Nenortas, E., and Beckett, D. (1995) Biochemistry 34, 16624-16631.