Interaction site for soluble cytochromes on the tetraheme cytochrome subunit bound to the bacterial photosynthetic reaction center mapped by site- directed mutagenesis

Biochemistry

Volumn 37, Issue 34, 1998, Pages 11732-11744

  Osyczka, Artur ^a   Nagashima, Kenji V P ^a   Sogabe, Satoshi ^b,c   Miki, Kunio ^b   Yoshida, Makoto ^a   Shimada, Keizo ^a   Matsuura, Katsumi ^a  

^a TOKYO METROPOLITAN UNIVERSITY   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c NIPPON ROCHE RESEARCH CENTER   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME;

AMINO ACID SUBSTITUTION; ARTICLE; CRYSTALLOGRAPHY; ELECTRON TRANSPORT; NONHUMAN; PHOTOSYNTHESIS; PRIORITY JOURNAL; REACTION ANALYSIS; RHODOPSEUDOMONAS; SITE DIRECTED MUTAGENESIS;

AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; BINDING SITES; CYTOCHROMES; CYTOCHROMES C; ELECTRON TRANSPORT; ELECTROSTATICS; GLUTAMIC ACID; HEME; LIGHT-HARVESTING PROTEIN COMPLEXES; LYSINE; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PROTEIN BINDING; RHODOSPIRILLACEAE; SOLUBILITY; SPECTROPHOTOMETRY;

BACTERIA (MICROORGANISMS); BLASTOCHLORIS; EQUUS CABALLUS; NEGIBACTERIA; RHODOPSEUDOMONAS; RUBRIVIVAX GELATINOSUS;

EID: 0032566342     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980910h     Document Type: Article

References (75)

1. Hiraishi, A. (1997) Int. J. Syst. Bacteriol. 47, 217-219.
2. Deisenhofer, J., Epp, O., Miki, K., Huber, R., and Michel, H. (1985) Nature 318, 618-624.
3. Deisenhofer, J., and Michel, H. (1989) EMBO J. 8, 2149-2170.
4. Deisenhofer, J., Epp, O., Sinning, I., and Michel, H. (1995) J. Mol. Biol. 246, 429-457.
5. Allen, J. P., Feher, G., Yeates, T. O., Komiya, H., and Rees, D. C. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 5730-5734.
6. Allen, J. P., Feher, G., Yeates, T. O., Komiya, H., and Rees, D. C. (1987) Proc. Natl. Acad Sci. U.S.A. 84, 6162-6166.
7. Chang, C. H., Tiede, D., Tang, J., Smith, U., Norris, J., and Schiffer, M. (1986) FEBS Lett. 205, 82-86.
8. Coleman, W. J., and Youvan, D. C. (1990) Annu. Rev. Biophys. Biophys. Chem. 19, 333-367.
9. Diner, B. A., Nixon, P. J., and Farchaus, J. W. (1991) Curr. Opin. Struct. Biol. 1, 546-554.
10. Laußermair, E., and Oesterhelt, D. (1992) EMBO J. 11, 777-783.
11. Bibikova, M., Arlt, T., Zinth, W., and Oesterhelt, D. (1995) in Photosynthesis: from Light to Biosphere (Mathis, P., Ed.) Vol I, pp 867-870, Kluwer Academic, Dordrecht, The Netherlands.
12. Dohse, B., Mathis, P., Wachtveitl, J., Laussermair, E., Iwata, S., Michel, H., and Oesterhelt, D. (1995) Biochemistry 34, 11335-11343.
13. Arlt, T., Dohse, B., Schmidt, S., Wachtveitl, J., Laussermair, E., Zinth, W., and Oesterhelt, D. (1996) Biochemistry 35, 9235-9244.
14. Nitschke, W., and Dracheva, S. M. (1995) in Anoxygenic Photosynthetic Bacteria (Blankenship, R. E., Madigan, M. T., and Bauer, C. E., Eds.) pp 775-805, Kluwer Academic, Dordrecht, The Netherlands.
15. Meyer, T. E., and Donohue, T. J. (1995) in Anoxygenic Photosynthetic Bacteria (Blankenship, R. E., Madigan, M. T., and Bauer, C. E., Eds.) pp 725-745, Kluwer Academic, Dordrecht, The Netherlands.
16. Schoepp, B., Parot, P., Menin, L., Gaillard, J., Richaud, P., and Verméglio, A. (1995) Biochemistry 34, 11736-11742.
17. Menin, L., Schoepp, B., Parot, P., and Verméglio, A. (1997) Biochemistry 36, 12183-12188.
18. Hochkoeppler, A., Ciurli, S., Venturoli, G., and Zannoni, D. (1995) FEBS Lett. 357, 70-74.
19. Hochkoeppler, A., Zannoni, D., Ciurli, S., Meyer, T. E., Cusanovich, M. A., and Tollin, G. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 6998-7002.
20. Hochkoeppler, A., Ciurli, S., Kofod, P., Venturoli, G., and Zannoni, D. (1997) Photosynth. Res. 53, 13-21.
21. Knaff, D. B., Willie, A., Long, J. E., Kriauciunas, A., Durham, B., and Millett, F. (1991) Biochemistry 30, 1303-1310.
22. Meyer, T. E., Bartsch, R. G., Cusanovich, M. A., and Tollin, G. (1993) Biochemistry 32, 4719-4726.
23. Güner, S., Willie, A., Millett, F., Caffrey, M. S., Cusanovich, M. A., Robertson, D. E., and Knaff, D. B. (1993) Biochemistry 32, 4793-4800.
24. Sogabe, S., Saeda, M., Uno, A., Ezoe, T., Miki, M., Matsuura, Y., Matsuura, K., and Miki, K. (1992) in Research in Photosynthesis (Murata, N., Ed.) Vol. II, pp 531-534, Kluwer Academic, Dordrecht, The Netherlands.
25. Nagashima, K. V. P., Matsuura, K., Ohyama, S., and Shimada, K. (1994) J. Biol. Chem. 269, 2477-2484.
26. Ouchane, S., Picaud, M., and Astier, C. (1995) FEBS Lett. 374, 130-134.
27. Ouchane, S., Picaud, M., Reiss-Husson, F., Vernotte, C., and Astier, C. (1996) Mol. Gen. Genet. 252, 379-385.
28. Fukushima, A., Matsuura, K., Shimada, K., and Satoh, T. (1988) Biochim. Biophys. Acta 933, 399-405.
29. Nitschke, W., Agalidis, I., and Rutherford, A. W. (1992) Biochim. Biophys. Acta 1100, 49-57.
30. Nagashima, K. V. P., Shimada, K., and Matsuura, K. (1996) FEBS Lett. 385, 209-213.
31. Ouchane, S., Picaud, M., Vernotte, C., Reiss-Husson, F., and Astier, C. (1997) J. Biol. Chem. 272, 1670-1676.
32. Ouchane, S., Picaud, M., Vernotte, C., and Astier, C. (1997) EMBO J. 16, 4777-4787.
33. Saeki, K., Suetsugu, Y., Tokuda, K., Miyatake, Y., Young, D. A., Marrs, B. L., and Matsubara, H. (1991) J. Biol. Chem. 266, 12889-12895.
34. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) in Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
35. Osyczka, A., Yoshida, M., Nagashima, K. V. P., Shimada, K., and Matsuura, K. (1997) Biochim. Biophys. Acta 1321, 93-99.
36. Bartsch, R. G. (1978) in The Photosynthetic Bacteria (Clayton, R. K., and Sistrom, W. R., Eds.) pp 249-279, Plenum Press, New York and London.
37. Matsuura, K., and Shimada, K. (1986) Biochim. Biophys. Acta 852, 9-18.
38. Nagashima, K. V. P., Sakuragi, Y., Shimada, K., and Matsuura, K. (1998) Photosynth. Res. (in press).
39. Kleywegt, G. J. (1996) CCP4/ESF-EACBM Newsletter on Protein Crystallography 32, 32-36.
40. Kleywegt, G. J., and Jones, T. A. (1997) Methods Enzymol. 277, 208-230.
41. Brünger, A. T. (1992) X-PLOR, A System for Crystallography and NMR, Yale University Press, New Haven, CT.
42. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
43. Nicholls, A., Sharp, K. A., and Honig, B. H. (1991) Proteins 11, 281-296.
44. Watkins, J. A., Cusanovich, M. A., Meyer, T. E., and Tollin, G. (1994) Protein Sci. 3, 2104-2114.
45. Caffrey, M. S., Bartsch, R. G., and Cusanovich, M. A. (1992) J. Biol. Chem. 267, 6317-6321.
46. Tollin, G., Cheddar, G., Watkins, J. A., Meyer, T. E., and Cusanovich, M. A. (1984) Biochemistry 23, 6345-6349.
47. Tiede, D. M., Vashishta, A. C., and Gunner, M. R. (1993) Biochemistry 32, 4515-4531.
48. Meyer, T. E., Tollin, G., and Cusanovich, M. A. (1994) Biochimie 76, 480-488.
49. Hall, J., Zha, X., Durham, B., O'Brien, P., Vieira, B., Davis, D., Okamura, M., and Millett, F. (1987) Biochemistry 26, 4494-4500.
50. Long, J. E., Durham, B., Okamura, M., and Millett, F. (1989) Biochemistry 28, 6970-6974.
51. Adir, N., Axelrod, H. L., Beroza, P., Isaacson, R. A., Rongey, S. H., Okamura, M. Y., and Feher, G. (1996) Biochemistry 35, 2535-2547.
52. Matsuura, K., Fukushima, A., Shimada, K., and Satoh, T. (1988) FEBS Lett. 237, 21-25.
53. Hall, J., Zha, X., Yu, L., Yu, C. A., and Millett, F. (1987) Biochemistry 26, 4501-4504.
54. Hall, J., Ayres, M., Zha, X., O'Brien, P., Durham, B., Knaff, D. B., and Millett, F. (1987) J. Biol. Chem. 262, 11046-11051.
55. Hall, J., Kriaucionas, A., Knaff, D. B., and Millett, F. (1987) J. Biol. Chem. 262, 14005-14009.
56. Van der Wal, H. N., Van Grondelle, R., Millett, F., and Knaff, D. B. (1987) Biochim. Biophys. Acta 893, 490-498.
57. Ambler, R. P., Meyer, T. E., and Kamen, M. D. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 472-475.
58. Ambler, R. P., Daniel, M., Hermoso, J., Meyer, T. E., Bartsch, R. G., and Kamen, M. D. (1979) Nature 278, 659-660.
59. Sogabe, S., Ezoe, T., Kasai, N., Saeda, M., Uno, A., Miki, M., and Miki, K. (1994) FEBS Lett. 345, 5-8.
60. Sogabe, S., and Miki, K. (1995) J. Mol. Biol. 252, 235-247.
61. Meyer, T. E., Przysiecki, C. T., Watkins, J. A., Bhattacharyya, A., Simondsen, R. P., Cusanovich, M. A., and Tollin, G. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 6740-6744.
62. Borsari, M., Benini, S., Marchesi, D., and Ciurli, S. (1997) Inorg. Chim. Acta 263, 379-384.
63. Ambler, R. P., Meyer, T. E., and Kamen, M. D. (1979) Nature 278, 661-662.
64. Ambler, R. P. (1991) Biochim. Biophys. Acta 1058, 42-47.
65. Samyn, B., De Smet, L., Van Driessche, G., Meyer, T. E., Bartsch, R. G., Cusanovich, M. A., and Van Beeumen, J. J. (1996) Eur. J. Biochem. 236, 689-696.
66. Holten, D., Windsor, M. W., Parson, W. W., and Thornber, J. P. (1978) Biochim. Biophys. Acta 501, 112-126.
67. Schopes, R. J., Levine, L. M. A., Holten, D., and Wraight, C. A. (1987) Photosynth. Res. 12, 165-180.
68. Dracheva, S. M., Drachev, L. A., Konstantinov, A. A., Semenov, A. Y., Skulachev, V. P., Arutjunjan, A. M., Shuvalov, V. A., and Zaberezhnaya, S. M. (1988) Eur. J. Biochem. 171, 253-264.
69. Ortega, J. M., and Mathis, P. (1992) FEBS Lett. 301, 45-48.
70. Ortega, J. M., and Mathis, P. (1993) Biochemistry 32, 1141-1151.
71. Nagashima, K. V. P., Matsuura, K., Wakao, N., Hiraishi, A., and Shimada, K. (1997) Plant Cell Physiol. 38, 1249-1258.
72. Moser, C. C., Keske, J. M., Warncke, K., Farid, R. S., and Dutton, P. L. (1992) Nature 355, 796-802.
73. Nitschke, W., and Rutherford, A. W. (1994) Biochem. Soc. Trans. 22, 694-699.
74. Kraus, P. (1991) J. Appl. Crystallogr. 24, 946-950.
75. Merritt, E. A., and Murphy, M. E. P. (1997) Acta Crystallogr., Sect. D 50, 869-873.