Promoter recognition by Escherichia coli RNA polymerase: Effects of the UP element on open complex formation and promoter clearance

Biochemistry

Volumn 37, Issue 51, 1998, Pages 18074-18080

  Strainic Jr , Michael G ^a   Sullivan, Jennifer J ^a   Velevis, Algirdas ^a   DeHaseth, Pieter L ^a,b  

^a CASE WESTERN RESERVE UNIVERSITY   (United States)

^b CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOSIDE TRIPHOSPHATE; RIBOSOME RNA; RNA POLYMERASE; TRANSFER RNA;

ARTICLE; COMPLEX FORMATION; CONSENSUS SEQUENCE; DIFFUSION; DNA BINDING; ENZYME ANALYSIS; ENZYME KINETICS; ESCHERICHIA COLI; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION;

BASE SEQUENCE; CONSENSUS SEQUENCE; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; KINETICS; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; PEPTIDE CHAIN INITIATION, TRANSLATIONAL; PROMOTER REGIONS (GENETICS); REGULATORY SEQUENCES, NUCLEIC ACID; RNA; RRNA OPERON; SPECTROMETRY, FLUORESCENCE; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0032558963     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9813431     Document Type: Article

References (31)

1. McClure, W. R. (1985) Annu. Rev. Biochem. 54, 171-204.
2. Ross, W., Gosink, K. K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., Severinov, K., and Gourse, R. L. (1993) Science 262, 1407-1413.
3. Bauer, B. F., Kar, E. G., Elford, R. M., and Holmes, W. M. (1988) Gene 63, 123-134.
4. Lamond, A. I., and Travers, A. A. (1983) Nature (London) 305, 248-250.
5. Hsu, L. M., Giannini, J. K., Leung, T.-W., and Crosthwaite, J. C. (1991) Biochemistry 30, 813-822.
6. Nishi, T., and Itoh, S. (1986) Gene 44, 29-36.
7. Banner, C. D. B., Moran, C. P., Jr., and Losick, R. (1983) J. Mol. Biol. 168, 351-365.
8. Helmann, J. D. (1995) Nucleic Acids Res. 23, 2351-2360.
9. Rao, L., Ross, W., Appleman, J. A., Gaal, T., Leirmo, S., Schlax, P. J., Record, M. J. Jr., and Gourse, R. L. (1994) J. Mol. Biol. 235, 1421-1435.
10. Tang, Y., Murakami, K., Ishihama, A., and deHaseth, P. L. (1996) J. Bacteriol. 178, 6945-6951.
11. Gourse, R. L. (1988) Nucleic Acids Res. 16, 9789-9809.
12. Gaal, T., Bartlett, M. S., Ross, W., Turnbough, C. L., Jr., and Gourse, R. L. (1997) Science 278, 2092-2097.
13. Sullivan, J. J., Bjornson, K. P., Sowers, L. C., and deHaseth, P. L. (1997) Biochemistry 36, 8005-8012.
14. Burgess, R. R., and Jendrisak, J. J. (1975) Biochemistry 14, 4634-4638.
15. Gonzales, N., Wiggs, J., and Chamberlin, M. J. (1977) Arch. Biochem. Biophys. 182, 404-408.
16. Record, M. T., Jr., Reznikoff, W. S., Craig, M. L., McQuade, K. L., and Schlax, P. J. (1996) Escherichia coli and Salmonella, cellular and molecular biology (Neidhardt, F. C., Ed.) pp 792-820, ASM Press, Washington, DC.
17. deHaseth, P. L., Zupancic, M., and Record, M. T., Jr. (1998) J. Bacteriol. 180, 3019-3025.
18. McClure, W. R. (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 5634-5638.
19. Fedoriw, A. M., Liu, H., Anderson, V. E., and deHaseth, P. L. (1998) Biochemistry 37, 11971-11979.
20. Chen, Y.-F., and Helmann, J. D. (1997) J. Mol. Biol. 267, 47-59.
21. deHaseth, P. L., and Helmann, J. D. (1995) Mol. Microbiol. 16, 817-824.
22. Murakami, K., Kimura, M., Owens, J. T., Meares, C. F., and Ishihama, A. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 1709-1714.
23. Estrem, S. T., Gaal, T., Ross, W., and Gourse, R. L. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 9761-9766.
24. Sowers, L. C., Fazakerley, G. V., Eritja, R., Kaplan, B. E., and Goodman, M. F. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 5434-5438.
25. Nordlund, T. M., Anderson, S., Nilsson, L., Rigler, R., Graslund, A., and McLaughlin, L. W. (1989) Biochemistry 28, 9095-9103.
26. Wu, P., and Nordlund, T. M. (1990) Biochemistry 29, 6508-6514.
27. Law, S. M., Eritja, R., Goodman, M. F., and Breslauer, K. J. (1996) Biochemistry 35, 12329-12337.
28. Record, M. T., Jr., Ha, J. H., and Fisher, M. A. (1991) Methods Enzymol. 208, 291-343.
29. Suh, W.-C., Ross, W., and Record, M. T., Jr. (1993) Science 259, 358-361.
30. Smith, T. L., and Sauer, R. T. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 8868-8872.
31. Schmitt, B., and Reiss, C. (1995) Biochem. J. 306, 123-128.