Spectroscopic characterization of a DNA-binding domain, Zα, from the editing enzyme, dsRNA adenosine deaminase: Evidence for left-handed Z-DNA in the Zα-DNA complex

Biochemistry

Volumn 37, Issue 38, 1998, Pages 13313-13321

  Berber, Imre ^a,b   Winston, William ^a   Manoharan, Ramasamy ^a   Schwartz, Thomas ^a   Alfken, Jens ^a   Kim, Yang Gyun ^a   Lowenhaupt, Ky ^a   Herbert, Alan ^a   Rich, Alexander ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DEAMINASE;

AMINO TERMINAL SEQUENCE; ARTICLE; CIRCULAR DICHROISM; DNA STRUCTURE; ENZYME BINDING; FLUORESCENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; RAMAN SPECTROMETRY; SEQUENCE ANALYSIS;

NON-PROGRAMMATIC;

ADENOSINE DEAMINASE; AMINO ACID SEQUENCE; ANIMALS; CHICKENS; CIRCULAR DICHROISM; DEOXYCYTIDINE; DEOXYGUANOSINE; DNA; HEAT; HUMANS; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PEPTIDES; POLYDEOXYRIBONUCLEOTIDES; PROTEIN CONFORMATION; PROTEIN DENATURATION; RNA EDITING; SPECTROMETRY, FLUORESCENCE; SPECTRUM ANALYSIS, RAMAN;

EID: 0032558388     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9813126     Document Type: Article

References (50)

1. Wang, A. H.-J., Quigley, G. J., Kolpak, F. J., Crawford, J. L., van Boom, J. H., van der Marel, G., and Rich, A. (1979) Nature 282, 680-686.
2. Rich, A. (1983) Cold Spring Harbor Symp. Quant. Biol. 47, 1-12.
3. Rich, A., Nordheim, A., Wang, A. H.-J. (1984) Annu. Rev. Biochem. 53, 791-846.
4. Rich, A. (1993) Gene 135, 99-109.
5. Herbert, A. G., and Rich, A. (1996) J. Biol. Chem. 271, 11595-11598.
6. Nordheim, A., and Rich, A. (1983) Nature 303, 1661-1677.
7. Naylor, L. H., and Clark, E. M. (1990) Nucleic Acids Res. 18, 1595-1601.
8. Bullock, P., Miller, J., and Botchan, M. (1986) Mol. Cell. Biol. 6, 3948-3953.
9. Treco, D., and Arnheim, N. (1986) Mol. Cell. Biol. 6, 3934-3947.
10. Blaho, J. A., and Wells, R. D. (1987) J. Biol. Chem. 262, 6082.
11. Wahls, W. P., Wallace, L. J., and Moore, P. D. (1990) Mol. Cell. Biol. 10, 785-793.
12. Wittig, B., Dorbic, T., and Rich, A. (1989) J. Cell Biol. 108, 755-764.
13. Wittig, B., Dorbic, T., and Rich, A. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2259-2263.
14. Wittig, B., Wölfl, S., Dorbic, T., Vahrson, W., and Rich, A. (1992) EMBO J. 11, 4653-4663.
15. Wölfl, S., Wittig, B., and Rich, A. (1995) Biochim. Biophys. Acta 1264, 294-302.
16. Müller, V., Takeya, M., Brendel, S., Wittig, B., and Rich A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 780-784.
17. Wölfl, S., Martinez, C., Rich, A., and Majzoub, J. A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 3664-3668.
18. Herbert, A. G., Lowenhaupt, K., Spitzner, J., and Rich, A. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 7550-7554.
19. Herbert, A. G. (1996) Trends Genet. 12, 6-9.
20. Herbert, A. G., Lowenhaupt, K., Spitzner, J., Berger, I., and Rich, A. (1996) in Biological Structure and Dynamics (Sarma, R. H., and Sarma, M. H. Eds.) Vol. 2, pp 189-198, Adenine Press, New York.
21. Herbert, A. G., and Rich, A. (1993) Nucleic Acids Res. 21, 2669-2672.
22. Melcher, T., Maas, S., Herb, A., Sprengel, R., Seeburg, P. H., and Higuchi, M. (1996) Nature 379, 460-464.
23. Bass, B. L. (1993) in The RNA World (Getseland R. F., and Atkins, J. F. Eds.) pp 383-418, Cold Spring Harbor Laboratory Press, Plainview, NY.
24. Maas, S., Melcher, T., Herb, A., Seeburg, P. H., Keller, W., Krause, S., Higuchi, M., and O'Connell, M. A. (1996) J. Biol. Chem. 271, 12221-1226.
25. Sommer, B., Kohler, M.. Sprengel, R., and Seeburg, P. H. (1991) Cell 67, 11-19.
26. Herbert, A., Alfken, J., Kim, Y.-G., Mian, I. S., Nishikura, K., and Rich, A. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 8421-8426.
27. Behe, M., and Felsenfeld, G. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 1619-1623.
28. Pohl, F. M., and Jovin, T. M. (1972) J. Mol. Biol. 67, 375-396.
29. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-126.
30. Andrade, M. A., Chacón, P., Merelo, J. J., and Morán, F. (1993) Protein Eng. 6, 383-390.
31. Merelo, J. J., Andrade, M. A., Prieto, A., and Morán, F. (1994) Neurocomputing 6, 443-454.
32. Sönnichsen, F. D., Van Eyk, J. E., Hodges, R. S., and Sykes, B. D. (1992) Biochemistry 31, 8790-8798.
33. Jasanoff, A., and Fersht, A. R. (1994) Biochemistry 33, 2129-2135.
34. Waterhous, D. V., and Johnson, W. C., Jr. (1994) Biochemistry 33, 2121-2128.
35. Shiraki, K., Nishikawa, K., and Goto, Y. (1995) J. Mol. Biol. 245, 180-194.
36. Zhou, N. E., Kay, C. M., Sykes, B. D., and Hodges, R. S. (1993) Biochemistry 32, 6190-6197.
37. Thamann, T. J., Lord, R. C., Wang, A. H.-J., and Rich, A. (1981) Nucleic Acids Res. 9, 5443-5457.
38. Beechem, J., and Brand, L. (1985) Annu. Rev. Biochem. 54, 43-71.
39. Vorlickova, M., Kypr, J., Stokrova, S., and Sponar, J. (1982) Nucleic Acids Res. 10, 1071-1080.
40. Zimmer, C., Tymen, S., Marck, C., and Guschlbauer, W. (1982) Nucleic Adds Res. 10, 1081-1091.
41. Wells, R. D., Miglietta, J. J., Klysik, J., Larson, J. E., Stirdivant, S. M., and Zacharias, W. (1982) J. Biol. Chem. 257, 10166-10171.
42. Taboury, J. A., and Taillandier, E. (1985) Nucleic Acids Res. 13, 4469-4483.
43. Kim, Y. G., Kim, P. S., Herbert, A., and Rich, A. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12875-12879.
44. Mercado, C. M., and Tomasz, M. (1977) Biochemistry 16, 2040-2046.
45. Sastry, M., Fiala, R., Lipman, R., Tomasz, M., and Patel, D. J. (1995) J. Mol. Biol. 247, 338-359.
46. Amaratunga, M., Pancoska, P. O., Paner, T. M., and Benight, A. S. (1990) Nucleic Acids Res. 18, 577-587.
47. Peticolas, W. (1995) in Methods in Enzymology: Biochemical Spectroscopy (Sauer, K., Abelson, J. N., and Simon, M. I. Eds.) Vol. 246. pp 389-417, Academic Press, New York.
48. Dai, Z. Y., Thomas, G. A., Evertsz, E., and Peticolas, W. L. (1989) Biochemistry 28, 6991-6996.
49. Schroth, G. P., Chou, P. J., and Ho, P. S. (1992) J. Biol. Chem. 267, 11846-11855.
50. Liu, L. F., and Wang, J. C. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 7024-7027.