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note
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[6] Topo II activity was measured by assessing decatenation of catenated kinetoplast DNA (0.2 μg). Reaction buffer contained 50 mM Tris-HCl, pH 8, 120 mM KCl, 10 mM MgCl2, 0.5 mM ATP, 0.5 mM dithiothreitol and 30 μg/ml BSA. Reactions were incubated with 2 units of Topo II in the presence or absence of test compounds for 30 min at 37 °C. One unit of Topo II can decatenate 0.2 μg kinetoplast DNA for 30 min at 37 °C. The reactions were stopped by adding a mixture of sarkosyl, bromophenol blue and glycerol, and electrophoresed in 1 % agarose gel with 0.5 μg/ml ethidium bromide in Tris-acetate buffer containing 1 mM EDTA. The DNA bands were visualized over UV light and photographed.
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0010394696
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note
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[8] Topo II cleavage reactions contained 6 units of the enzyme and 100 ng supercoiled pBR 322 DNA in a cleavage buffer (10 mM Tris-HCl, pH 7.9, 50 mM NaCl, 50 mM KCl, 0.1 mM EDTA, 5 mM MgCl2 and 0.5 mM ATP). After incubation at 37 °C for 30 min, the reaction mixture was treated with SDS and proteinase K and electrophoresed in 1 % agarose gel.
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9
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