Structural dynamics of HIV-1 Rev and its complexes with RRE and 5S RNA

Biochemistry

Volumn 37, Issue 7, 1998, Pages 1800-1809

  Lam, Wai Chung ^a   Seifert, Jan M ^b   Amberger, Franz ^b   Graf, Christine ^b   Auer, Manfred ^b   Millar, David P ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b NOVARTIS RESEARCH INSTITUTE   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

REV PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; DELETION MUTANT; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN RNA BINDING; SPECTROFLUOROMETRY; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; FLUORESCENCE POLARIZATION; GENE PRODUCTS, REV; HIV-1; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PEPTIDES; RNA, RIBOSOMAL, 5S; SEQUENCE DELETION; SPECTROMETRY, FLUORESCENCE; TRYPTOPHAN;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0032539654     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9719096     Document Type: Article

References (56)

1. Emerman, M., Vazeux, R., and Peden, K. (1989) Cell 57, 1155-1165.
2. Lu, X., Heimer, J., Rekosh, D., and Hammarskjold, M.-L. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 7598-7602.
3. Malim, M. H., Hauber, J., Fenrick, R., and Cullen B. R. (1989) Nature 338, 254-257.
4. Chang, D. D., and Sharp, P. A. (1989) Cell 59, 789-795.
5. Sodroski, J., Goh, W. C., Rosen, C., Dayton, A., Terwilliger, E., and Haseltine, W. (1986) Nature 321, 412-417.
6. Feinberg, M. B., Jarrett, R. F., Aldovini, A., Gallo, R. C., and Wong-Staal, F. (1986) Cell 46, 807-817.
7. Rosen, C. A., Terwilliger, E., Dayton, A., Sodroski, J. G., and Haseltine, W. A. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 2071-2075.
8. Dayton, E. T., Powell, D. M., and Dayton, A. I. (1989) Science 246, 1625-1629.
9. Hadzopoulou-Cladaras, M., Felber, B. K., Cladaras, C., Athanassopoulos, A., Tse, A., and Pavlakis, G. N. (1989) J. Virol. 63, 1265-1274.
10. Heaphy, S., Finch, J. T., Gait, M. J., Karn, J., and Singh, M. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 7366-7370.
11. Bartel, D. P., Zapp, M. L., Green, M. L., and Szostak, J. W. (1991) Cell 67, 529-536.
12. Tiley, L. S., Malim, M. H., Tewary, H. K., Stockley, P. G., and Cullen, B. R. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 758-762.
13. Daly, T. J., Cook, K. S., Gray, G. S., Maione, T. E., and Rusche, J. R. (1989) Nature 342, 816-819.
14. Zapp, M. L., and Green, M. R. (1989) Nature 342, 714-716.
15. Cochrane, A. W., Chen, C-H., and Rosen, C. A. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1198-1202.
16. Malim, M. H., Tiley, L. S., Mc Cam, D. F., Rusche, J. R., Hauber, J., and Cullen, B. R. (1990) Cell 60, 675-683.
17. Olsen, H. S., Nelbock, P., Cochrane, A. W., and Rosen, C. A. (1990) Science 247, 845-848.
18. Kjems, J., Calnan, B. J., Frankel, A. D., and Sharp, P. A. (1992) EMBO J. 11, 1119-1129.
19. Malim, M. H., Bohnlein, S., Hauber, J., and Cullen, B. R. (1989) Cell 58, 205-214.
20. Mermer, B., Felber, B. K., Campbell, M., and Pavlakis, G. N. (1990) Nucleic. Acids Res. 18, 2037-2044.
21. Venkatesh, L. K., and Chinnadurai, G. (1990) Virology 178, 327-330.
22. Cole, J. L., Gehman, J. D., Shafer, J. A., and Kuo, L. C. (1993) Biochemistry 32, 11769-11775.
23. Mann, D. A., Mikaélian, I., Zemmel, R. W., Green, S. M., Lowe, A. D., Kimura, T., Singh, M., Butler, P. J. G., Gait, M. J., and Karn, J. (1994) J. Mol. Biol. 241, 193-207.
24. Zemmel, R. W., Kelley, A. C., Karn, J., and Butler, P. J. G. (1996) J. Mol. Biol. 258, 763-777.
25. Nalin, C. M., Purcell, R. D., Antelman, D., Mueller, D., Tomchak, L., Wegrzynski, B., McCarney, E., Toome, V., Kramer, R., and Hsu, M.-C. (1990) Proc. Natl. Acad. Sci U.S.A. 87, 7593-7597.
26. Wingfield, P. T., Stahl, S. J., Payton, M. A., Venkatesan, S., Misra, M., and Steven, A. C. (1991) Biochemistry 30, 7527-7534.
27. Auer, M., Gremlich, H.-U., Seifert, J.-M., Daly, T. J., Parslow, T. G., Casari, G., and Gstach, H. (1994) Biochemistry 33, 2988-2996.
28. Scanlon, M. J., Fairlie, D. P., Craik, D. J., Englebretsen, D. R., and West, M. L. (1995) Biochemistry 34, 8242-8249.
29. Battiste, J. L., Mao, H., Rao, S., Tan, R., Muhandiram, D. R., Kay, L. E., Frankel, A. D., and Williamson, J. R. (1996) Science 273, 1547-1551.
30. Cook, K. S., Fisk, G. J., Hauber, J., Usman, N., Daly, T. J., and Rusche, J. R. (1991) Nucleic Acids Res. 19, 1577-1583.
31. Daly, T. J., Doten, R. C., Rennert, P., Auer, M., Jaksche, H., Donner, A., Fisk, G., and Rusche, J. R. (1993) Biochemistry 32, 10497-10505.
32. Scaringe, S. A., Francklyn, C., and Usman, N. (1990) Nucleic Acids Res. 18, 5433-5441.
33. Wu, T., Ogilvie, K. K., and Pon, R. T. (1988) Tetrahedron Lett. 29, 4249-4252.
34. Ogilvie, K. K., Usman, N., Nicoghosian, K., and Cedergren, R. J. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 5764-5768.
35. Usman, N., Ogilvie, K. K., Jiang, M.-Y., and Cedergren, R. J. (1987) J. Am. Chem. Soc. 109, 7845-7854.
36. Schaller, H., Weimann, G., Lerch, B., and Khorana, H. G. (1963) J. Am. Chem. Soc. 85, 3821.
37. Chaix, C., Duplaa, A. M., Gasparutto, D., Molko, D., and Teoule, R. (1989) Nucleic Acids Res. Symp. Ser. 21, 45-46.
38. Chaix, C., Molko, D., and Teoule, R. (1989) Tetrahedron Lett. 30, 71-74.
39. Wu, T., Ogilvie, K. K., and Pon, R. T. (1989) Nucleic Acids Res. 17, 3501-3517.
40. Cohen, A. S., Najarian, D. R., Paulus, A., Guttman, A., Smith, J. A., and Karger, B. L. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 9660-9663.
41. Guttman, A., Nelson, R. J., and Cooke, N. (1992) J. Chromatogr. 593, 297-303.
42. Cobianchi, F., and Wilson, S. H. (1987) Methods Enzymol. 152, 94-112.
43. Milligan, J. F., Groebe, D. R., Witherall, G. W., and Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
44. Wyatt, J. R., Chastain, M., and Puglisi, J. D. (1991) BioTechniques 11, 764-769.
45. Guest, C. R., Hochstrasser, R. A., Sowers, L. C., and Millar, D. P. (1991) Biochemistry 30, 3271-3279.
46. Bevington, P. R. (1969) Data Reduction and Error Analysis for the Physical Sciences, McGraw-Hill, New York.
47. Knuston, J. R., Walbridge, D. G., and Brand, L. (1982) Biochemistry 21, 4671-4679.
48. Kinosita, K., Kawato, S., and Ikegami, A. (1977) Biophys. J. 20, 289-305.
49. Cantor, C. R., and Schimmel, P. R. (1980) Biophysical Chemistry. Part II: Techniques for the Study of Biological Structure and Function W. H. Freeman & Co., New York.
50. Chen, R. F., Knutson, J. R., Ziffer, H., and Porter, D. (1991) Biochemistry 30, 5184-5195.
51. Daly, T. J., Rennert, P., Lynch, P., Barry, J. K., Dundas, M., Rusche, J. R., Doten, R. C., Auer, M., and Farrington, G. K. (1993) Biochemistry 32, 8945-8954.
52. Zapp, M. L., Hope, T. J., Parslow, T. G., and Green, M. R. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 7734-7738.
53. Malim, M. H., and Cullen, B. R. (1990) Cell 65, 241-248.
54. Daly, T. J., Cook, K. S., Fisk, G., Jensen, D., Hauber, J., Jaschke, H., and Rusche, J. R. (1991) in Genetic Structure and Regulation of HIV (Haseltine, W. A., and Wong-Staal, F., Eds.) pp 135-142, Raven, New York.
55. Tirado, M. M., and Garcia de la Torre, J. (1980) J. Chem. Phys. 73, 1986-1993.
56. Fridell, R. A., Fischer, U., Lührmann, R., Meyer, B. E., Meinkoth, J. L., Malim, M. H., and Cullen, B. R. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 2936-2940.