A collapsed intermediate with nonnative packing of hydrophobic residues in the folding of TEM-1 β-lactamase

Biochemistry

Volumn 37, Issue 7, 1998, Pages 1941-1950

  Vanhove, Marc ^a,d   Lejeune, Annabelle ^a   Guillaume, Gilliane ^a   Virden, Richard ^e   Pain, Roger H ^b   Schmid, Franz X ^c   Frère, Jean Marie ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b JO EF STEFAN INSTITUTE   (Slovenia)

^c UNIVERSITY OF BAYREUTH   (Germany)

^d ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^e NONE

Author keywords

[No Author keywords available]

Indexed keywords

BETA LACTAMASE;

ARTICLE; BACILLUS SUBTILIS; CARBOXY TERMINAL SEQUENCE; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; ENZYME KINETICS; ENZYME MECHANISM; HYDROGEN BOND; HYDROPHOBICITY; ISOMERISM; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE;

ACRYLAMIDE; ACRYLAMIDES; ANILINO NAPHTHALENESULFONATES; BACTERIAL PROTEINS; BETA-LACTAMASES; CIRCULAR DICHROISM; ESCHERICHIA COLI; FLUORESCENCE POLARIZATION; KINETICS; PROTEIN FOLDING; SPECTROMETRY, FLUORESCENCE; TRYPTOPHAN;

BACILLUS SUBTILIS;

EID: 0032539580     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi972143c     Document Type: Article

References (56)

1. Baldwin, R. L. (1993) Curr. Opin. Struct. Biol. 3, 84-91.
2. Matthews, B. W. (1993) Annu. Rev. Biochem. 62, 139-160.
3. Evans, P. A., and Radford, S. E. (1994) Curr. Opin. Struct. Biol. 4, 100-106.
4. Jackson, S. E., and Fersht, A. R. (1991a) Biochemistry 30, 10428-10435.
5. Jackson, S. E., and Fersht, A. R. (1991b) Biochemistry 30, 10436-10443.
6. Briggs, M. S., and Roder, H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 2017-2021.
7. Kragelund, B. B., Robinson, C. V., Knudsen, J., Dobson, C. M., and Poulsen, F. M. (1995) Biochemistry 34, 7117-7224.
8. Schindler, T., Herrler, M., Marahiel, M. A., and Schmid, F. X. (1995) Nat. Struct. Biol. 2, 663-673.
9. Bycroft, M., Matouschek, A., Kellis, J. T., Serrano, L., and Fersht, A. R. (1990) Nature 346, 488-490.
10. Radford, S. E., Dobson, C. M., and Evans, P. A. (1992) Nature 358, 302-307.
11. Jennings, P. A., and Wright, P. E. (1993) Science 262, 892-895.
12. Varley, P., Gronenborn, A. M., Christensen, H., Wingfield, P. T., Pain, R. H., and Clore, M. (1993) Science 260, 1110-1113.
13. Udgaonkar, J. E., and Baldwin, R. L. (1988) Nature 335, 694-699.
14. Roder, H., Elöve, G. A., and Englander, S. W. (1988) Nature 335, 700-704.
15. Miranker, A., Robinson, C. V., Radford, S. E., Aplin, R. T., and Dobson, C. M. (1993) Science 262, 896-899.
16. Ikeguchi, M., Kuwajima, K., Mitani, M., and Sugai, S. (1986) Biochemistry 25, 6965-6972.
17. Ptitsyn, O. B., Pain, R. H., Semisotnov, G. V., Zerovnik, E., and Razgulyaev, O. I. (1990) FEBS Lett. 262, 20-24.
18. Elöve, G. A., Chaffotte, A. F., Roder, H., and Goldberg, M. E. (1992) Biochemistry 31, 6876-6883.
19. Chaffotte, A. F., Guillou, Y., and Goldberg, M. E. (1992) Biochemistry 31, 9694-9702.
20. Itzhaki, L. S., Evans, P. A., Dobson, C. M., and Radford, S. E. (1994) Biochemistry 33, 5212-5220.
21. Cummings, A. L., and Eyring, E. M. (1975) Biopolymers 14, 2107-2114.
22. Zana, R. (1975) Biopolymers 14, 2425-2428.
23. Karplus, M., and Weaver, D. L. (1976) Nature 260, 404-406.
24. Kim, P. S., and Baldwin, R. L. (1990) Annu. Rev. Biochem. 59, 631-660.
25. Karplus, M., and Weaver, D. L. (1994) Protein Sci. 3, 650-668.
26. Chan, H. S., and Dill, K. A. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 6388-6392.
27. Covell, D. G., and Jernigan, R. L. (1990) Biochemistry 29, 3287-3294.
28. Neri, D., Billeter, M., Wider, G., and Wüthrich, K. (1992) Science 257, 1559-1563.
29. Saab-Rincon, G., Froebe, C. L., and Matthews, C. R. (1993) Biochemistry 32, 13981-13990.
30. Uversky, V. N., and Ptitsyn, O. B. (1994) Biochemistry 33, 2782-2791.
31. Semisotnov, G. V., Rodionova, N. A., Razgulyaev, O. I., Uversky, V. N., Gripas, A. F., and Gilmanshin, R. I. (1991) Biopolymers 31, 119-128.
32. Eaton, W. A., Thompson, P. A., Chan, C.-K., Hagen, S. J., and Hofrichter, J. (1996) Structure 4, 1133-1139.
33. Hamada, D., Segawa, S., and Goto, Y. (1996) Nat. Struct. Biol. 3, 868-873.
34. Denton, M. E., Rothwarf, D. M., and Scheraga, H. A. (1994) Biochemistry 33, 11225-11236.
35. Rothwarf, D. M., and Scheraga, H. A. (1996) Biochemistry 35, 13797-13807.
36. Brent, R., and Ptashne, M. (1981) Proc. Natl. Acad Sci. U.S.A. 78, 4204-4208.
37. Dubus, A., Wilkin, J.-M., Raquet, X., Normark, S., and Frère, J.-M. (1994) Biochem. J. 301, 485-494.
38. Nozaki, Y. (1972) Methods Enzymol. 26, 43-50.
39. Tonomura, B., Nakatani, H., Ohnishi, M., Yamaguchi-Ito, J., and Hiromi, K. (1978) Anal. Biochem. 84, 370-383.
40. Vanhove, M., Raquet, X., and Frère, J.-M. (1995) Proteins: Struct., Funct., Genet. 22, 110-118.
41. Lakowicz, J. R. (1986) Principles of Fluorescence Spectroscopy, Plenum Press, New York.
42. Eftink, M. R. (1991) Methods Biochem. Anal. 35, 127-207.
43. Lehrer, S. S. (1971) Biochemistry 10, 3254-3263.
44. Garvey, E. P., Swank, K., and Matthews, C. R. (1989) Proteins: Struct., Funct., Genet. 6, 259-266.
45. Jelsch, C., Mourey, L., Masson, J.-M., and Samama, J.-P. (1993) Proteins: Struct., Funct., Genet. 16, 364-383.
46. Strynadka, N. C. J., Adachi, H., Jensen, S. E., Johns, K., Sielecki, A., Betzel, C., Sutoh, K., and James, M. N. J. (1992) Nature 359, 700-705.
47. Eftink, M. R., and Ghiron, C. A. (1981) Anal. Biochem. 114, 672-680.
48. Birks, J. B. (1970) Photophysics of Aromatic Molecules, pp 433-447, Wiley-Interscience, New York.
49. Jones, B. E., Jennings, P. A., Pierre, R. A., and Matthews, C. R. (1994) Biochemistry 33, 15250-15258.
50. Vanhove, M., Raquet, X., Palzkill, T., Pain, R. H., and Frère, J.-M. (1996) Proteins: Struct., Funct., Genet. 25, 104-111.
51. Brandts, J. F., Halvorson, H. R., and Brennan, M. (1975) Biochemistry 14, 4953-4960.
52. Schmid, F. X. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 123-143.
53. Mitchinson, C., and Pain, R. H. (1985) J. Mol. Biol. 184, 331-342.
54. Roder, H., and Elöve, G. A. (1994) in Mechanisms of Protein Folding (Pain, R. H., Ed.) pp 26-54, Oxford University Press, Oxford, U.K.
55. Gervasoni, P., and Plückthun, A. (1997) FEBS Lett. 401, 138-142.
56. Loewenthal, R., Sancho, J., and Fersht, A. R. (1991) Biochemistry 30, 6775-6779.