Evolutionary conservation of enzymatic catalysis: Quantitative comparison of the effects of mutation of aligned residues in Saccharomyces cerevisiae and Escherichia coli inorganic pyrophosphatases on enzymatic activity

Biochemistry

Volumn 37, Issue 7, 1998, Pages 1754-1761

  Pohjanjoki, Pekka ^a,b   Lahti, Reijo ^a   Goldman, Adrian ^a   Cooperman, Barry S ^b  

^a UNIVERSITY OF TURKU   (Finland)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INORGANIC PYROPHOSPHATASE;

ARTICLE; CONFORMATIONAL TRANSITION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME CONFORMATION; ESCHERICHIA COLI; HYDROGEN BOND; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SITE DIRECTED MUTAGENESIS; STRUCTURE ACTIVITY RELATION;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BINDING SITES; CATALYSIS; CONSERVED SEQUENCE; ENZYME ACTIVATION; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; HYDROGEN-ION CONCENTRATION; KINETICS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PYROPHOSPHATASES; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT;

ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE;

EID: 0032539520     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi971771r     Document Type: Article

References (37)

1. Chen, J., Brevet, A., Fromant, M., Leveque, F., Schmitter, J.-M., Blanquet, S., and Plateau, P. (1990) J. Bacteriol. 172, 5686-5689.
2. Lundin, M., Baltscheffsky, H., and Ronne, H. (1991) J. Biol. Chem. 266, 12168-12172.
3. Sonnewald, U. (1992) Plant J. 2, 571-581.
4. Kornberg, A. (1962) in Horizons in Biochemistry (Kasha, M., and Pullman, B., Eds.) p 251, Academic Press, New York.
5. Heikinheimo, P., Lehtonen, J., Baykov, A. A., Lahti, R., Cooperman, B. S., and Goldman, A. (1996) Structure 4, 1491-1508.
6. Springs, B., Welsh, K. M., and Cooperman, B. S. (1981) Biochemistry 20, 6384-6391.
7. Cooperman, B. S. (1982) Methods Enzymol. 87, 526-548.
8. Welsh, K. M., Jacobyansky, A., Springs, B., and Cooperman, B. S. (1983) Biochemistry 22, 2243-2248.
9. Gonzalez, M. A., Webb, M. R., Welsh, K. M., and Cooperman, B. S. (1984) Biochemistry 23, 797-801.
10. Baykov, A. A., and Shestakov A. S. (1992) Eur. J. Biochem. 206, 463-470.
11. Käpylä, J., Hyytiä, T., Lahti, R., Goldman, A., Baykov, A. A., and Cooperman, B. S. (1995) Biochemistry 34, 792-800.
12. Salminen, T., Käpylä, J., Heikinheimo, P., Kankare, J., Goldman, A., Heinonen, J., Baykov, A. A., Cooperman, B. S., and Lahti, R. (1995) Biochemistry 34, 782-791.
13. Baykov, A. A., Hyytiä, T., Volk, S. E., Kasho, V. N., Vener, A. V., Goldman, A., Lahti, R., and Cooperman, B. S. (1996) Biochemistry 35, 4655-4661.
14. Cooperman, B. S., Baykov, A. A., and Lahti, R. (1992) Trends Biochem. Sci. 17, 262-266.
15. Baykov, A. A., and Avaeva, S. M. (1973) Eur. J. Biochem. 32, 136-142.
16. Kankare, J., Neal, G. S., Salminen, T., Glumoff, T., Cooperman, B. S., Lahti, R., and Goldman, A. (1994) Protein Eng. 7, 823-830.
17. Terzyan, S. S., Voronova, A. A., Smirnova, E. A., Kuranova, I. P., Nekrasov, Y. V., Arytyunyan, E. G., Vainshtein, B. K., Höhne, W. E., and Hansen, G. (1984) Bioorg. Khim. 10, 1469-1482.
18. Heikinheimo, P., Pohjanjoki, P., Helminen, A., Tasanen, M., Cooperman, B. S., Goldman, A., Baykov, A. A., and Lahti R. (1996) Eur. J. Biochem. 239, 138-143.
19. Baykov, A. A., and Avaeva, S. M. (1981) Anal. Biochem. 116, 1-4.
20. Volk, S. E., Baykov, A. A., Duzhenko, V. S., and Avaeva, S. M. (1982) Eur. J. Biochem. 125, 215-220.
21. Kolakowski, L. F., Jr., Schloesser, M., and Cooperman, B. S. (1988) Nucleic Acids Res. 16, 10441-10452.
22. Kunitz, M. (1952) J. Gen. Physiol. 35, 423-450.
23. Duggleby, R. (1984) Comput. Biol. Med. 14, 447-455.
24. Moe, O. A., and Butler, L. G. (1972) J. Biol. Chem. 247, 7308-7314.
25. Konsowitz, L. M., and Cooperman, B. S. (1976) J. Am. Chem. Soc. 98, 1993-1995.
26. Knight, W. B., Fitts, S. W., and Dunaway-Mariano, D. (1981) Biochemistry 20, 4079-4086.
27. Cooperman, B. S., Panackal, A., Springs, B., and Hamm, D. J. (1981) Biochemistry 20, 6051-6060.
28. Benkovic, S. J., and Schray, K. J. (1973) in The Enzymes, 3rd Ed. (Boyer, P. D., Ed.) Vol. 8, pp 201-238, Academic Press, New York.
29. Volk, S. E., Dudarenkov, V. Y., Käpylä, J., Kasho, V. N., Voloshina, O. A., Salminen, T., Goldman, A., Lahti, R., Baykov, A. A., and Cooperman, B. S. (1996) Biochemistry 35, 4662-4669.
30. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 945-950.
31. Fabrichniy, I. P., Kasho, V. N., Hyytiä, T., Salminen, T., Halonen, P., Dudarenkov, V. Yu., Heikinheimo, P., Chernyak, V. Ya., Goldman, A., Lahti, R., Cooperman, B. S., and Baykov, A. A. (1997) Biochemistry 36, 7746-7753.
32. Kankare, J., Salminen, T., Lahti, R., Cooperman, B. S., Baykov, A. A., and Goldman, A. (1996) Acta Crystallogr. D52, 551-563.
33. Schäfer, T., and Schäfer, G. (1997) in Proceedings of the 1st International Meeting on Inorganic Pyrophosphatases (Lahti, R., Ed.) Turku, Finland, pp 9-12, University of Turku, Turku, Finland.
34. Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., Kerlavage, A. R., Dougherty, B. A., Tomb, J. F., Adams, M. D., Reich, C. I., Overbeek, R., Kirkness, E. F., Weinstock, K. G., Merrick, J. M., Glodek, A., Scott, J. L., Geoghagen, N. S. M, Weidman, J. F., Fuhrmann, J. L., and Venter, J. C. (1996) Science 273, 1058-1073.
35. Baltscheffsky, H., Baltscheffsky, M., Nadanaciva, S., Persson, B., and Schultz, A. (1997) in Proceedings of the 1st International Meeting on Inorganic Pyrophosphatases (Lahti, R., Ed.) Turku, Finland, pp 1-3, University of Turku, Turku, Finland.
36. Harutyunyan, E. H., Kuranova, I. P., Vainshtein, B. K., Höhne, W. E., Lamzin, V. S., Dauter, Z., Teplyakov, A. V., and Wilson, K. S. (1996a) Eur. J. Biochem. 239, 220-228.
37. Harutyunyan, E. H., Oganessyan, V. Yu., Oganessyan, N. N., Terzyan, S. S., Popov, A. N., Rubinsky, S. V., Vainshtein, B. K., Nazarova, T. I., Kurilova, S. A., Vorobyeva, N. N., and Avaeva, S. M. (1996b) Kristallografia 41, 84-96.