-
1
-
-
0025876740
-
Protein folding: Local structures, subunits, and assemblies
-
Jaenicke, R. Protein folding: Local structures, subunits, and assemblies. Biochemistry 30:3147-3161, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 3147-3161
-
-
Jaenicke, R.1
-
2
-
-
0023834933
-
Surface amino acids as sites of temperature-sensitive folding mutations in the P22 tailspike protein
-
Yu, M.-H., King, J. Surface amino acids as sites of temperature-sensitive folding mutations in the P22 tailspike protein. J. Biol. Chem. 263:1424-1431, 1988.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 1424-1431
-
-
Yu, M.-H.1
King, J.2
-
3
-
-
0025850262
-
Global suppression of protein folding defects and inclusion body formation
-
Mitraki, A., Fane, B., Haase-Pettingell, C., Sturtevant, J., King, J. Global suppression of protein folding defects and inclusion body formation. Science 253:54-58, 1991.
-
(1991)
Science
, vol.253
, pp. 54-58
-
-
Mitraki, A.1
Fane, B.2
Haase-Pettingell, C.3
Sturtevant, J.4
King, J.5
-
4
-
-
0026348316
-
Inactive and temperature-sensitive folding mutants generated by tryptophan substitutions in the membrane-bound D-lactate dehydrogenase of Escherichia coli
-
Truong, H.-T., Pratt, E.A., Rule, G.S., Hsue, P.Y., Ho, C. Inactive and temperature-sensitive folding mutants generated by tryptophan substitutions in the membrane-bound D-lactate dehydrogenase of Escherichia coli. Biochemistry 30:10722-10729, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 10722-10729
-
-
Truong, H.-T.1
Pratt, E.A.2
Rule, G.S.3
Hsue, P.Y.4
Ho, C.5
-
5
-
-
3643063644
-
Mutational effects on inclusion body formation
-
Himmel, M.E., Georgiou, G., (eds.). Washington, D.C.: American Chemical Society.
-
Wetzel, R., Chrunyk, B.A. Mutational effects on inclusion body formation. In: "Biocatalyst Design for Stability and Specificity." Himmel, M.E., Georgiou, G., (eds.). Washington, D.C.: American Chemical Society. 1993:116-125.
-
(1993)
Biocatalyst Design for Stability and Specificity
, pp. 116-125
-
-
Wetzel, R.1
Chrunyk, B.A.2
-
7
-
-
14744271625
-
Protein aggregation in vitro and in vivo: A quantitative model of the kinetic competition between folding and aggregation
-
Kiefhaber, T., Rudolph, R., Kohler, H.-H., Buchner, J. Protein aggregation in vitro and in vivo: A quantitative model of the kinetic competition between folding and aggregation. Bio Technology 9:825-829, 1991.
-
(1991)
Bio Technology
, vol.9
, pp. 825-829
-
-
Kiefhaber, T.1
Rudolph, R.2
Kohler, H.-H.3
Buchner, J.4
-
8
-
-
0026751786
-
The folding of hen lysozyme involves partially structured intermediates and multiple pathways
-
Radford, S.E., Dobson, C.M., Evans, P.A. The folding of hen lysozyme involves partially structured intermediates and multiple pathways. Nature 358:302-307, 1992.
-
(1992)
Nature
, vol.358
, pp. 302-307
-
-
Radford, S.E.1
Dobson, C.M.2
Evans, P.A.3
-
9
-
-
0026781019
-
Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy
-
Elöve, G.A., Chaffotte, A.F., Roder, H., Goldberg, M.E. Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy. Biochemistry 31:6876-6883, 1992.
-
(1992)
Biochemistry
, vol.31
, pp. 6876-6883
-
-
Elöve, G.A.1
Chaffotte, A.F.2
Roder, H.3
Goldberg, M.E.4
-
10
-
-
0028889435
-
Submillisecond events in protein folding
-
Nölting, B., Golbik, R., Fersht, A.R. Submillisecond events in protein folding. Proc. Natl. Acad. Sci. USA 92:10668-10672, 1996.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 10668-10672
-
-
Nölting, B.1
Golbik, R.2
Fersht, A.R.3
-
11
-
-
0029973119
-
Direct observation of fast protein folding: The initial collapse of apomyoglobin
-
Ballew, R.M., Sabelko, J., Gruebele, M. Direct observation of fast protein folding: The initial collapse of apomyoglobin. Proc. Natl. Acad. Sci. USA 93:5759-5764, 1996.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5759-5764
-
-
Ballew, R.M.1
Sabelko, J.2
Gruebele, M.3
-
12
-
-
0030963424
-
Fast events in protein folding: Relaxation dynamics of secondary and teriary structure in native apomyoglobin
-
Gilmanshin, R., Williams, S., Callender, R.H., Woodruff, W.H., Dyer, R.B. Fast events in protein folding: Relaxation dynamics of secondary and teriary structure in native apomyoglobin. Proc. Natl. Acad. Sci. USA 94:3709-3713, 1997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3709-3713
-
-
Gilmanshin, R.1
Williams, S.2
Callender, R.H.3
Woodruff, W.H.4
Dyer, R.B.5
-
13
-
-
0030154861
-
Cytochrome-c folding triggered by electron-transfer
-
Mines, G.A., Pascher, T., Lee, S.C. Cytochrome-c folding triggered by electron-transfer. Chemistry and Biology 3:491-497, 1996.
-
(1996)
Chemistry and Biology
, vol.3
, pp. 491-497
-
-
Mines, G.A.1
Pascher, T.2
Lee, S.C.3
-
14
-
-
0030584652
-
Protein folding triggered by electron-transfer
-
Pascher, T., Chesick, J.P., Winkler, J.R., Gray, H.B. Protein folding triggered by electron-transfer. Science 271:1558-1560, 1996.
-
(1996)
Science
, vol.271
, pp. 1558-1560
-
-
Pascher, T.1
Chesick, J.P.2
Winkler, J.R.3
Gray, H.B.4
-
15
-
-
0009525454
-
Optical triggers of Protein-folding-Response
-
Winkler, J.R., Gray, H.B. Optical triggers of Protein-folding-Response. Science 274:629, 1996.
-
(1996)
Science
, vol.274
, pp. 629
-
-
Winkler, J.R.1
Gray, H.B.2
-
16
-
-
0031047914
-
Submillisecond protein folding kinetics studied by ultrafast mixing
-
Chan, C.-K., Hu, Y., Takahashi, S., Rousseau, D.L., Eaton, W.A., Hofrichter, J. Submillisecond protein folding kinetics studied by ultrafast mixing. Proc. Natl. Acad. Sci. USA 94:1779-1784, 1996.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1779-1784
-
-
Chan, C.-K.1
Hu, Y.2
Takahashi, S.3
Rousseau, D.L.4
Eaton, W.A.5
Hofrichter, J.6
-
17
-
-
3643068914
-
Early events in protein folding studied by photoinitiation of alpha-helix formation in de-novo peptides
-
Kholodenko, Y., Volk, M., Gooding, E., Hochstrasser, R.M. Early events in protein folding studied by photoinitiation of alpha-helix formation in de-novo peptides. Abstracts of Papers of the American Chemical Society 212:346, 1996.
-
(1996)
Abstracts of Papers of the American Chemical Society
, vol.212
, pp. 346
-
-
Kholodenko, Y.1
Volk, M.2
Gooding, E.3
Hochstrasser, R.M.4
-
18
-
-
0001172389
-
Synthesis and photolysis properties of a photolabile linker based on 3-methoxybenzoin
-
Rock, R.S., Chan, S.I. Synthesis and photolysis properties of a photolabile linker based on 3-methoxybenzoin. J. Org. Chem. 61:1526-1529, 1996.
-
(1996)
J. Org. Chem.
, vol.61
, pp. 1526-1529
-
-
Rock, R.S.1
Chan, S.I.2
-
19
-
-
0021757436
-
A new force field for molecular mechanical simulation of nucleic acids and proteins
-
Weiner, S.J., Kollman, P.A., Case, D.A., et al. A new force field for molecular mechanical simulation of nucleic acids and proteins. J. Am. Chem. Soc. 106:765-784, 1984.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
-
20
-
-
0003864349
-
Constant temperature constrained molecular dynamics: The Newton-Euler inverse mass operator method
-
Vaidehi, N., Jain, A., Goddard, W.A., III. Constant temperature constrained molecular dynamics: the Newton-Euler inverse mass operator method. J. Phys. Chem. 100:10508-10517, 1996.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 10508-10517
-
-
Vaidehi, N.1
Jain, A.2
Goddard III, W.A.3
-
21
-
-
0028222235
-
Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions
-
Chakrabartty, A., Kortemme, T., Baldwin, R.L. Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions. Protein Sci. 3:843-852, 1994.
-
(1994)
Protein Sci.
, vol.3
, pp. 843-852
-
-
Chakrabartty, A.1
Kortemme, T.2
Baldwin, R.L.3
-
22
-
-
0342546152
-
Étude, par Spectroscopie infra-rouge, de la Conformation de quelques Composés peptidiques modèles
-
Avignon, M., Huong, P.V., Lascombe, J. Étude, par Spectroscopie infra-rouge, de la Conformation de quelques Composés peptidiques modèles. Biopolymers 8:69-89, 1969.
-
(1969)
Biopolymers
, vol.8
, pp. 69-89
-
-
Avignon, M.1
Huong, P.V.2
Lascombe, J.3
-
23
-
-
0014467163
-
Conformational studies of peptide systems: The rotational states of the NH-CH fragment of alanine dipeptides by nuclear magnetic resonance
-
Bystrov, V.F., Portnova, S.L., Tsetlin, V.I., Ivanov, V.T., Ovchinnikov, Yu, A. Conformational studies of peptide systems: The rotational states of the NH-CH fragment of alanine dipeptides by nuclear magnetic resonance. Tetrahedron 25:493-515, 1969.
-
(1969)
Tetrahedron
, vol.25
, pp. 493-515
-
-
Bystrov, V.F.1
Portnova, S.L.2
Tsetlin, V.I.3
Ivanov, V.T.4
Ovchinnikov, Yu.A.5
-
24
-
-
0017411710
-
The Protein Data Bank: A computer based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, T.F., Williams, G.J.B, et al. The Protein Data Bank: A computer based archival file for macromolecular structures. J. Mol. Biol. 122:535-542, 1997.
-
(1997)
J. Mol. Biol.
, vol.122
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
25
-
-
0028952952
-
Folding simulations of alanine-based peptides with lysine residues
-
Sung, S.-S. Folding simulations of alanine-based peptides with lysine residues. Biophys. J. 68:826-834, 1995.
-
(1995)
Biophys. J.
, vol.68
, pp. 826-834
-
-
Sung, S.-S.1
-
26
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S., Thornton, J.M. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26:283-291, 1993.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
27
-
-
0025690309
-
Situations of gamma-turns in proteins: Their relation to alpha-helices, beta-sheets and ligand binding sites
-
Milner-White, J.E. Situations of gamma-turns in proteins: Their relation to alpha-helices, beta-sheets and ligand binding sites. J. Mol. Biol. 216:385-397, 1990.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 385-397
-
-
Milner-White, J.E.1
-
28
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., Saunder, C. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637, 1983.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Saunder, C.2
-
29
-
-
0028200975
-
Helix folding simulations with various initial conformations
-
Sung, S.-S. Helix folding simulations with various initial conformations. Biophys. J. 66:1796-1803, 1994.
-
(1994)
Biophys. J.
, vol.66
, pp. 1796-1803
-
-
Sung, S.-S.1
-
30
-
-
0029011910
-
Molecular dynamics simulations of isolated helices of myoglobin
-
Hirst, J.D., Brooks, C.L., III. Molecular dynamics simulations of isolated helices of myoglobin. Biochemistry 34:7614-7621, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 7614-7621
-
-
Hirst, J.D.1
Brooks III, C.L.2
-
31
-
-
0026205054
-
A Molecular dynamics simulation of polyalanine: An analysis of equilibrium motions and helix-coil transitions
-
Daggett, V., Kollman, P.A., Kuntz, I.D. A Molecular dynamics simulation of polyalanine: An analysis of equilibrium motions and helix-coil transitions. Biopolymers 31:1115-1134, 1991.
-
(1991)
Biopolymers
, vol.31
, pp. 1115-1134
-
-
Daggett, V.1
Kollman, P.A.2
Kuntz, I.D.3
-
32
-
-
0030006074
-
Molecular dynamics simulations of synthetic peptide folding
-
Sung, S.-S., Wu, X.-W. Molecular dynamics simulations of synthetic peptide folding. Proteins 25:202-214, 1996.
-
(1996)
Proteins
, vol.25
, pp. 202-214
-
-
Sung, S.-S.1
Wu, X.-W.2
-
34
-
-
0026552361
-
Folding and function of a T4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence
-
Heinz, D.W., Baase, W.A., Matthew, B.W. Folding and function of a T4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence. Proc. Natl. Acad. Sci. USA 89:3751-3755, 1992.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 3751-3755
-
-
Heinz, D.W.1
Baase, W.A.2
Matthew, B.W.3
-
37
-
-
0344557043
-
Molecular dynamics and Monte Carlo simulations favor the alpha-helical form for alanine-based peptides in water
-
Tirado-Rives, J., Maxwell, D.S., Jorgensen, W.L. Molecular dynamics and Monte Carlo simulations favor the alpha-helical form for alanine-based peptides in water. J. Am. Chem. Soc. 115:11590-11593, 1993.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 11590-11593
-
-
Tirado-Rives, J.1
Maxwell, D.S.2
Jorgensen, W.L.3
-
38
-
-
0028831115
-
10-helical conformation of alanine-based peptides in aqueous solutions: An electron spin resonance investigation
-
10-helical conformation of alanine-based peptides in aqueous solutions: An electron spin resonance investigation. J. Am. Chem. Soc. 117:10555-10562, 1995.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 10555-10562
-
-
Smythe, M.L.1
Nakaie, C.R.2
Marshall, G.R.3
-
39
-
-
0025904730
-
Defining solution conformations of small linear peptides
-
Dyson, H.J., Wright, P.E. Defining solution conformations of small linear peptides. Annu. Rev. Biophys. Biophys. Chem. 20:519-538, 1991.
-
(1991)
Annu. Rev. Biophys. Biophys. Chem.
, vol.20
, pp. 519-538
-
-
Dyson, H.J.1
Wright, P.E.2
-
40
-
-
84988053694
-
An all atom force-field for simulations of proteins and nucleic acids
-
Weiner, S.J., Kollman, P.A., Nguyen, D.T., Case, D.A. 1986. An all atom force-field for simulations of proteins and nucleic acids. J. Comp. Chem. 7:230-252.
-
(1986)
J. Comp. Chem.
, vol.7
, pp. 230-252
-
-
Weiner, S.J.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
41
-
-
84860960789
-
Constrained dynamics of flexible molecules
-
van Gunsteren, W.F. Constrained dynamics of flexible molecules. Mol. Phys. 40:1015-1019, 1980.
-
(1980)
Mol. Phys.
, vol.40
, pp. 1015-1019
-
-
Van Gunsteren, W.F.1
-
42
-
-
0030789351
-
Temperature jump study of the Helix-coil kinetics of an alaninr peptide interpreted using a kinetic zipper model
-
Thompson, P.A., Eaton, W.A., Hofrichter, J. Temperature jump study of the Helix-coil kinetics of an alaninr peptide interpreted using a kinetic zipper model. Biochemistry 36:9200-9210, 1997.
-
(1997)
Biochemistry
, vol.36
, pp. 9200-9210
-
-
Thompson, P.A.1
Eaton, W.A.2
Hofrichter, J.3
-
43
-
-
0030046906
-
Fast events in protein folding: Helix melting and formation in a small peptide
-
Williams, S., Causgrove, T.P., Gilmanshin, R., et al. Fast events in protein folding: Helix melting and formation in a small peptide. Biochemistry 35:691-697, 1996.
-
(1996)
Biochemistry
, vol.35
, pp. 691-697
-
-
Williams, S.1
Causgrove, T.P.2
Gilmanshin, R.3
-
44
-
-
0001623168
-
Helix-coil kinetics: Folding time scales for helical peptides from a sequential kinetic model
-
Brooks, C.L. Helix-coil kinetics: Folding time scales for helical peptides from a sequential kinetic model. J. Phys. Chem. 100:2546-2549, 1996.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 2546-2549
-
-
Brooks, C.L.1
-
45
-
-
3643144954
-
-
Molecular Simulations, Incorporated, San Diego, CA. (MSC version 3.30)
-
POLYGRAF/BIOGRAF. Molecular Simulations, Incorporated, San Diego, CA. (MSC version 3.30).
-
POLYGRAF/BIOGRAF.
-
-
-
46
-
-
0000040038
-
A fast recursive algorithm for molecular dynamics simulations
-
The NEIMO-Hoover alogithm was incorporated into POLYGRAF by N. Vaidehi
-
Jain, A., Vaidehi, N., Rodriguez, G. A fast recursive algorithm for molecular dynamics simulations. J Comp Phys 106:258-268. 1993. The NEIMO-Hoover alogithm was incorporated into POLYGRAF by N. Vaidehi.
-
(1993)
J Comp Phys
, vol.106
, pp. 258-268
-
-
Jain, A.1
Vaidehi, N.2
Rodriguez, G.3
-
47
-
-
0028063256
-
Protein simulations using techniques suitable for very large systems: The cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics
-
Mathiowetz, A.M., Jain, A., Karasawa, N., Goddard, W.A. Protein simulations using techniques suitable for very large systems: The cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics. Proteins 20:227-247, 1994.
-
(1994)
Proteins
, vol.20
, pp. 227-247
-
-
Mathiowetz, A.M.1
Jain, A.2
Karasawa, N.3
Goddard, W.A.4
-
48
-
-
33751391161
-
Helix-coil theories: A comparative study for finite length polypeptides
-
Qian, H., Schellman, J.A. Helix-coil theories: A comparative study for finite length polypeptides. J. Phys. Chem. 96:3987-3994, 1992.
-
(1992)
J. Phys. Chem.
, vol.96
, pp. 3987-3994
-
-
Qian, H.1
Schellman, J.A.2
-
49
-
-
34250173942
-
Conformational equilibria of polypeptides and proteins: The helix-coil transition
-
San Francisco: W.H. Freeman and Co.
-
Cantor, C.R., Schimmel, P.R. Conformational equilibria of polypeptides and proteins: The helix-coil transition. In: "Biophysical Chemistry: The Behavior of Biological Macromolecules." vol. III. San Francisco: W.H. Freeman and Co., 1980:1063-1066.
-
(1980)
Biophysical Chemistry: The Behavior of Biological Macromolecules
, vol.3
, pp. 1063-1066
-
-
Cantor, C.R.1
Schimmel, P.R.2
-
50
-
-
3643089762
-
-
Schellman, J., Qian, H., Rohl, C., Kortemme, T. FORTRAN program "hcontent.for.", 1993. The N-capping and C-capping parameters of Chakrabartty et al., 1994, were used.
-
FORTRAN Program "Hcontent.for.", 1993. The N-capping and C-capping Parameters of Chakrabartty et Al., 1994, Were Used
-
-
Schellman, J.1
Qian, H.2
Rohl, C.3
Kortemme, T.4
-
51
-
-
0030458565
-
A leucine-rich repeat variant with a novel repetitive protein structural motif
-
Peters, J.W., Stowell, M.H.B., Rees, B.C. A leucine-rich repeat variant with a novel repetitive protein structural motif. Nat. Struct. Biol. 3:991-994, 1996.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 991-994
-
-
Peters, J.W.1
Stowell, M.H.B.2
Rees, B.C.3
-
52
-
-
0000432701
-
Crystal structure of holoenzyme refined at 1.9 Å resolution: Trigonal-Bipyramidal geometry of the cation binding site
-
Lebioda, L., Stec, B. Crystal structure of holoenzyme refined at 1.9 Å resolution: Trigonal-Bipyramidal geometry of the cation binding site. J. Am. Chem. Soc. 111:8511-8513, 1989.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 8511-8513
-
-
Lebioda, L.1
Stec, B.2
|