Genomics, isoforms, expression, and phylogeny of the MHC class I- related MR1 gene

Journal of Immunology

Volumn 161, Issue 8, 1998, Pages 4066-4077

  Riegert, Patricia ^a   Wanner, Valérie ^b   Bahram, Seiamak ^a,b  

^a BASEL INSTITUTE FOR IMMUNOLOGY   (Switzerland)

^b Ctr Rech d'Immunol d'Hematologie   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1;

ALTERNATIVE RNA SPLICING; ANTIGEN EXPRESSION; ARTICLE; CHROMOSOME 1; GENE LOCUS; GENE SEQUENCE; GENE STRUCTURE; HUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; GENES, MHC CLASS I; GENOME, HUMAN; HISTOCOMPATIBILITY ANTIGENS CLASS I; HUMANS; MICE; MOLECULAR SEQUENCE DATA; PROTEIN ISOFORMS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 0032532644     PISSN: 00221767     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (69)

1. Townsend, A., and H. Bodmer. 1989. Antigen recognition by class I-restricted T lymphocytes. Annu. Rev. Immunol. 7:601.
2. Bjorkman, P. J., and P. Parham. 1990. Structure, function, and diversity of class I major histocompatibility complex molecules. Annu. Rev. Biochem. 59:253.
3. Campbell, R. D., and J. Trowsdale. 1997. A map of the human major histocompatibility complex. Immunol. Today 18:16.
4. Bahram, S., and Spies, T. 1996. The MIC gene family. Res. Immunol. 147:328.
5. Koller, B. H., D. E. Geraghty, Y. Shimizu, R. DeMars, and H. T. Orr. 1988. HLA-E. A novel HLA class I gene expressed in resting T lymphocytes. J. Immunol. 141:897.
6. Geraghty, D. E., X. H. Wei, H. T. Orr, and B. H. Koller. 1990. Human leukocyte antigen F (HLA-F). An expressed HLA gene composed of a class I coding sequence linked to a novel transcribed repetitive element. J. Exp. Med. 171:1.
7. Geraghty, D. E., B. H. Koller, and H. T. Orr. 1987. A human major histocompatibility complex class I gene that encodes a protein with a shortened cytoplasmic segment. Proc. Natl. Acad. Sci. USA 84:9145.
8. Stroynowski, I. 1990. Molecules related to class-I major histocompatibility complex antigens. Annu. Rev. Immunol. 8:501.
9. Flaherty, L., E. Elliott, J. A. Tine, A. C. Walsh, and J. B. Waters. 1990. Immunogenetics of the Q and TL regions of the mouse. Crit. Rev. Immunol. 10:131.
10. Pease, L. R., R. M. Horton, J. K. Pullen, and Z. L. Cai. 1991. Structure and diversity of class I antigen presenting molecules in the mouse. Crit. Rev. Immunol. 11:1.
11. Fischer Lindahl, K., D. Byers, V. M. Dabhi, R. Hovik, E. P. Jones, G. P. Smith, C-R. Wang, H. Xiao, and M. Yoshino. 1997. H2-M3, a full-service class Ib histocompatibility antigen. Annu. Rev. Immunol. 15:851.
12. Braud, V., E. Y. Jones, and A. McMichael. 1997. The human major histocompatibility complex class Ib molecule HLA-E binds signal sequence-derived peptides with primary anchor residues at positions 2 and 9. Eur. J. Immunol. 27: 1164.
13. Aldrich, C. J., A. DeCloux, A. S. Woods, R. J. Cotter, M. J. Soloski, and J. Forman. 1994. Identification of a Tap-dependent leader peptide recognized by alloreactive T cells specific for a class Ib antigen. Cell 79:649.
14. Ellis, S. A., I. L. Sargent, C. W. Redman, and A. J. McMichael. 1986. Evidence for a novel HLA antigen found on human extravillous trophoblast and a choriocarcinoma cell line. Immunology 59:595.
15. Teitell, M., H. Cheroutre, C. Panwala, H. Holcombe, P. Eghtesady, and M. Kronenberg. 1994. Structure and function of H-2 T (T1a) region class I MHC molecules. Crit. Rev. Immunol. 14:1.
16. Joyce, S., P. Tabaczewski, R. H. Angeletti, S. G. Nathenson, and I. Stroynowski. 1994. A nonpolymorphic major histocompatibility complex class Ib molecule binds a large array of diverse self-peptides. J. Exp. Med. 179:579.
17. Kaliyaperumal, A., R. Falchetto, A. Cox, R. Dick, Jr., J. Shabanowitz, Y. H. Chien, L. Matis, D. F. Hunt, J. A. Bluestone. 1995. Functional expression and recognition of nonclassical MHC class I T10b is not peptide-dependent. J. Immunol. 155:2379.
18. Ito, K., L. Van Kaer, M. Bonneville, S. Hsu, D. B. Murphy, and S. Tonegawa. 1990. Recognition of the product of a novel MHC TL region gene (27b) by a mouse γδ T cell receptor. Cell 62:549.
19. Stroynowski, I., and J. Forman. 1995. Novel molecules related to MHC antigens. Curr. Opin. Immunol. 7:97.
20. Porcelli, S. A. 1995. The CD1 family: a third lineage of antigen-presenting molecules. Adv. Immunol. 59:1.
21. Bernard, A., and L. Boumsell. 1984. The clusters of differentiation (CD) defined by the First International Workshop on Human Leucocyte Differentiation Antigens. Hum. Immunol. 11:1.
22. Calabi, F., and C. Milstein. 1986. A novel family of human major histocompatibility complex-related genes not mapping to chromosome 6. Nature 323:540.
23. Yu, C. Y., and C. Milstein. 1989. A physical map linking the five CD1 human thymocyte differentiation antigen genes. EMBO J. 8:3727.
24. Bradbury, A., C. Milstein, and C. A. Kozak. 1991. Chromosomal localization of Cd1d genes in the mouse. Somatic Cell Mol. Genet. 17:93.
25. Zeng, Z., A. R. Castaño, B. W. Segelke, E. A. Stura, P. A. Peterson, and I. A. Wilson. 1997. Crystal structure of mouse CD1: an MHC-like fold with a large hydrophobic binding groove. Science 277:339.
26. Simister, N. E., and J. C. Ahouse. 1996. The structure and evolution of FcRn. Res. Immunol. 147:333.
27. Raghavan, M., and P. J. Bjorkman. 1996. Fc receptors and their interactions with immunoglobulins. Annu. Rev. Cell. Dev. Biol. 12:181.
28. Freije, J. P., A. Fueyo, J. A. Uria, G. Velasco, L. M. Sanchez, Y. S. Lopez-Boado, and C. Lopez-Otin. 1993. Human Zn-α2-glycoprotein: complete genomic sequence, identification of a related pseudogene and relationship to class I major histocompatibility complex genes. Genomics 18:575.
29. Pendas, A. M., T. Matilla, J. A. Uria, J. P. Freije, A. Fueyo, X. Estivill, and C. Lopez-Otin. 1994. Mapping of the human Zn-α2-glycoprotein gene (AZGP1) to chromosome 7q22 by in situ hybridization. Cytogenet. Cell. Genet. 66:263.
30. Noguchi, M., A., Kitabatake, T. Ishibashi, and M. Kasahara. 1995. The MHC class I-like Zn-α2-glycoprotein gene maps to mouse chromosome 5. Immunogenetics 42:72.
31. Bahram, S., M. Bresnahan, D. E. Geraghty, and T. Spies. 1994. A second lineage of mammalian major histocompatibility complex class I genes. Proc. Natl. Acad. Sci. USA 91:6259.
32. Fodil, N., L. Laloux, V. Wanner, P. Pellet, G. Hauptmann, N. Mizuki, H. Inoko, T. Spies, I. Theodorou, and S. Bahram. 1996. Allelic repertoire of the human MHC class I MICA gene. Immunogenetics 44:351.
33. Groh, V., S. Bahram, S. Bauer, A. Herman, M. Beauchamp, and T. Spies. 1996. Cell stress-regulated human major histocompatibility complex class I gene expressed in gastrointestinal epithelium. Proc. Natl. Acad. Sci. USA 93:12445.
34. Feder, J. N., A. Gnirke, W. Thomas, Z. Tsuchihashi, D. A. Ruddy, A. Basava, F. Dormishian, R. Domingo, Jr., M. C. Ellis, A. Fullan, et al. 1996. A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis. Nat. Genet. 13:399.
35. Hashimoto, K., M. Hirai, and Y. Kurosawa. 1997. Identification of a mouse homolog for the human hereditary haemochromatosis candidate gene. Biochem. Biophys. Res. Commun. 230:35.
36. Riegert, P., S. Gilfillan, I. Nanda, M. Schmid, and S. Bahram. 1997. The mouse HFE gene. Immunogenetics 47:170.
37. 2-microglobulin-deficient mice. Immunol. Lett. 39:105.
38. Beck, S., and B. G. Barrell. 1988. Human cytomegalovirus encodes a glycoprotein homologous to MHC lass-I antigens. Nature 331:269.
39. Rawlinson, W. D., H. E. Farrell, and B. G. Barrell. 1996. Analysis of the complete DNA sequence of murine cytomegalovirus. J. Virol. 70:8833.
40. Senkevich, T. G., J. J. Bugert, J. R. Sisler, E. V. Koonin, G. Darai, and B. Moss. 1996. Genome sequence of a human tumorigenic poxvirus: prediction of specific host response-evasion genes. Science 273:813.
41. Fahnestock, M. L., J. L. Johnson, R. M. Feldman, J. M. Neveu, W. S. Lane, and P. J. Bjorkman. 1995. The MHC class I homolog encoded by human cytomegalovirus binds endogenous peptides. Immunity 3:583.
42. Reyburn, H. T., O. Mandelboim, M. Vales-Gomez, D. M. Davis, L. Pazmany, and J. L. Strominger. 1997. The class I MHC homologue of human cytomegalovirus inhibits attack by natural killer cells. Nature 386:514.
43. Hashimoto, K., M. Hirai, and Y. Kurosawa. 1995. A gene outside the human MHC related to classical HLA class I genes. Science 269:693.
44. Hansen, T. H., B. M. Carreno, and D. H. Sachs. 1993. The major histocompatibility complex. In Fundamental Immunology, 3rd Ed. W. E. Paul, ed. Raven Press, New York, p. 577.
45. Ausubel, F. M. ed. 1996. Current Protocols in Molecular Biology. John Wiley & Sons, New York.
46. Sternberg, N., D. Smoller, and T. Braden. 1994. Three new developments in P1 cloning: increased cloning efficiency, improved clone recovery, and a new P1 mouse library. Genet. Anal. Tech. 11:171.
47. Dracopli, N. C., J. L. Haines, B. R. Korf, D. T. Moir, C. C. Morton, C. E. Seidman, J. G. Seidman, and D. R. Smith. 1996. Current Protocols in Human Genetics. John Wiley & Sons, New York.
48. Grossberger, D., and P. Parham. 1992. Reptilian class I major histocompatibility complex genes reveal conserved elements in class I structure. Immunogenetics 36:166.
49. Kaufman, J., J. Salomonsen, and M. Flajnik. 1994. Evolutionary conservation of MHC class I and class II molecules-different yet the same. Semin. Immunol. 6:411.
50. Madden, D. R. 1995. The three-dimensional structure of peptide-MHC complexes. Annu. Rev. Immunol. 13:587.
51. Salter, R. D., R. J. Benjamin, P. K. Wesley, S. E. Buxton, T. P. Garrett, C. Clayberger, A. M. Krensky, A. M. Norment, D. R. Littman, and P. Parham. 1990. A binding site for the T-cell co-receptor CD8 on the α3 domain of HLA-A2. Nature 345:41.
52. Salter, R. D., A. M. Norment, B. P. Chen, C. Clayberger, A. M. Krensky, D. R. Littman, and P. Parham. 1989. Polymorphism in the α3 domain of HLA-A molecules affects binding to CD8. Nature 338:345.
53. Yamaguchi, H., M. Hirai, Y. Kurosawa, and K. Hashimoto. 1997. A highly conserved major histocompatibility complex class I-related gene in mammals. Biochem. Biophys. Res. Commun. 238:697.
54. van Erp, S. H., B. Dixon, F. Figueroa, E. Egberts, and R. J. M. Stet. 1996. Identification and characterization of a new major histocompatibility complex class I gene in carp (Cyprinus carpio L.). Immunogenetics 44:49.
55. Krangel, M. S. 1986. Secretion of HLA-A and -B antigens via an alternative RNA splicing pathway. J. Exp. Med. 163:1173.
56. Ishitani, A., and D. E. Geraghty. 1992. Alternative splicing of HLA-G transcripts yields proteins with primary structures resembling both class I and class II antigens. Proc. Natl. Acad. Sci. USA 89:3947.
57. Woolfson, A., and C. Milstein. 1994. Alternative splicing generates secretory isoforms of human CD1. Proc. Natl. Acad. Sci. USA 91:6683.
58. Flajnik, M. F., M. Kasahara, B. P. Shum, L. Salter-Cid, E. Taylor, and L. Du Pasquier. 1993. A novel type of class I gene organization in vertebrates: a large family of non-MHC-linked class I genes is expressed at the RNA level in the amphibian Xenopus. EMBO J. 12:4385.
59. Trowsdale, J. 1995. "Both man & bird & beast:" comparative organization of MHC genes. Immunogenetics 41:1.
60. Watkins, D. I. 1995. The evolution of major histocompatibility class I genes in primates. Crit. Rev. Immunol. 15:1.
61. Ohno, S. 1970. Evolution by Gene Duplication. Springer-Verlag, Heidelberg.
62. Wolfe, K. H., and D. C. Shields. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708.
63. Kasahara, M., M. Hayashi, K. Tanaka, H. Inoko, K. Sugaya, T. Ikemura, and T. Ishibashi. 1996. Chromosomal localization of the proteasome Z subunit gene reveals an ancient chromosomal duplication involving the major histocompatibility complex. Proc. Natl. Acad. Sci. USA 93:9096.
64. Katsanis, N., J. Fitzgibbon, and E. M. C. Fisher. 1996. Paralogy mapping: identification of a region in the human MHC triplicated onto human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci. Genomics 35:101.
65. http://www.ncbi.nlm.nih.gov/omim/homology/.
66. McCusker, D., T. Jones, D. Sheer, and J. Trowsdale. 1997. Genetic relationships of the genes encoding the human proteasome β subunits and the proteasome PA28 complex. Genomics 45:362.
67. Williams, H., M. Schachner, B. Wang, and S. Kenwrick. 1997. Radiation hybrid mapping of the genes for tenascin-R (TNR), phosducin (PDC), laminin C1 (LAMC1), and TAX in 1q25-q32. Genomics 46:165.
68. Pamer, E. G., M. J. Bevan, and K. F. Lindahl. 1993. Do nonclassical, class Ib MHC molecules present bacterial antigens to T cells? Trends Microbiol. 1:35.
69. Colonna, M., F. Navarro, T. Bellon, M. Llano, P. Garcia, J. Samaridis, L. Angman, M. Cella, and M. Lopez-Botet. 1997. A common inhibitory receptor for major histocomaptibility complex class I molecules on human lymphoid and myelomonocytic cells. J. Exp. Med. 186:1809.