Structure-specific binding recognition of a methanogen chromosomal protein

European Journal of Biochemistry

Volumn 257, Issue 2, 1998, Pages 372-379

  Paradinas, Carine ^a   Gervais, Alain ^a   Maurizot, Jean Claude ^a   Culard, Françoise ^b  

^a UNIVERSITÉ D'ORLÉANS   (France)

^b CENTRE DE BIOPHYSIQUE MOLÉCULAIRE   (France)

Author keywords

Archaea; Architectural protein; DNA bending; Four way junction; MC1

Indexed keywords

BACTERIAL PROTEIN; BASIC PROTEIN; CHROMOSOME PROTEIN; DIVALENT CATION; DNA; DNA A; DNA B; DNA BINDING PROTEIN; HYDROXYL RADICAL; MAGNESIUM CHLORIDE; SODIUM CHLORIDE;

ARTICLE; CONTROLLED STUDY; DNA HELIX; DNA STRUCTURE; METHANOSARCINA; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING;

ARCHAEA; BACTERIA (MICROORGANISMS); METHANOSARCINA; METHANOSARCINA THERMOPHILA; PROKARYOTA;

EID: 0032532241     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1998.2570372.x     Document Type: Article

References (41)

1. Chartier, F., Laine, B., Sautière, P., Touzel, J. P. & Albagnac, G. (1985) Characterization of the chromosomal protein Hmb isolated from Aletlianosarcina barkeri, FEES Lett. 183, 119-123.
2. Chartier, F., Laine, B., Belaiche, D. & Sautiere, P. (1989) Primary structure of the chromosomal proteins MCla, MClb, and MClc from the archaebacterium Methanothrix soehngenii, J. Bio!. Chcm. 264, 17006-17015.
3. Grayling, R. A., Sandman, K. & Reeve, J. N. (1996) DNA stability and DNA binding protein, Adv. Protein Chein. 48, 437-466.
4. Culard, F., Laine, B., Sautière, P. & Maurizot, J. C. (1993) Stoichiometry of the binding of chromosomal protein MCI from the archaebacterium, Afethanosarcina sp. CHTI 55, to DNA, FEBS Lett. 315, 335-339.
5. Chartier, F., Laine, B. & Sautière, P. (1988) Characterization of the chromosomal protein MCI from the thermophilic archaebacte-rium Methanosarcina sp. CHTI 55 and its effect on the thermal stability of DNA, Biochim. Biophys. 951, 149-156.
6. Isabelle, V., Franchet-Beuzit, J., Sabattier, R., Laine, B., SpotheimMaurizot, M. & Charlier, M. (1993) Radioprotection of DNA by a DNA-binding protein: MCI chromosomal protein from the archaebacterium Methanosarcina sp. CHTI 55, Int. J. Radiât. Biol. 63, 749-758.
7. Laine, B Culard, F., Maurizot, J. C. & Sautière, P. (1991) The chromosomal protein MCI from the archaebacterium Methanosarcina sp. CHTI 55 induces DNA bending and supercoiling, Nucleic Acids Res. 19, 3041 -3045.
8. Toulmé, F., Le Cam, E., Teyssier, C., Delain, E., Sautière, P., Maurizot, J. C. & Culard, F. (1995) Conformational changes of DNA minicircles upon the binding of the archaebacterial histone-Iike protein MCI, J. Biol. Clicm. 270, 6286-6291.
9. Larquet, E., Le Cam, E., Fourcade, A., Culard, F., Furrer, P. & Delain, E. (1996) Complémentarité des microscopies dans l'analyse structurale des minicercles d'ADN associés àla protéine MCI, C. K. Acad. Sei. Paris, Sciences de la ville/Life sciences 319, 461-471.
10. Teyssier, C., Toulmé, F., Touzel, J. P., Gervais, A., Maurizot, J. C. & Culard, F. (1996) Preferential binding of the archaebacterial histone-like MCI protein to negatively supercoiled DNA minicircles, Biochemistry 35, 7954-7958.
11. Teyssier, C., Laine, B., Gervais, A., Maurizot, J. C. & Culard, F. (1994) Archaebacterial histone-like protein MCI can exhibit a sequence-specific binding to DNA, Biocliem. J. 303, 567-573.
12. Holliday, R. (1964) A mechanism for gene conversion in fungi, Genet. Res. 5, 282-304.
13. Ducke, D. R., Murchie, A. I. H., Giraud-Panis, M.-J. E., Pöhler, J. R. & Lilley, D. M. J. (1995) Structure of the four-way DNA junction and its interaction with proteins, Philos. Trans. R. Soc. Lond. B Biol. Sei. 347, 27-36.
14. Clegg, R. M., Murchie, A. I. H., Zechel, A., Carlberg, C., Diekmann, S. & Lilley, D. M. J. (1992) Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction, Biochemistry 31, 4846-4856.
15. Churchill, M. E. A., Tullius, T. D., Kallenbach, N. R. & Seeman, N. C. (1988) A Holliday recombination intermediate is two-fold symmetric, Proc. Nat! Acad. Sei. USA 85, 4653-4656.
16. Duckett, D. R., Murchie, A. I. H. & Lilley, D. M. J. (1990) The role of metal ions in the conformation of the four-way DNA junction, EMBOJ. 9,583-590.
17. von Kitzing, E., Lilley, D. M. J. & Diekman, S. (1990) The stereo-chemistry of a four-way DNA junction: a theoretical study, Nucleic Acids Res. 18, 2671 -2683.
18. Duckett, D. R., Murchie, A. I. H., Diekmann, S., von Kitzing, E., Kemper, B. & Lilley, D. M. J. (1988) The structure of the Holliday junction, and its resolution, Cell 55, 79-89.
19. Guo, Q., Lu, M. & Kallenbach, N. R. (1991) Conformational preference and ligand binding properties of DNA junctions are determined by sequence at the branch, Biopolymers 31, 359-372.
20. White, M. F., Giraud-Panis, M.-J. E., Pöhler, J. R. G. & Lilley, D. M. J. (1997) Recognition and manipulation of branched DNA structure by junction resolving enzymes, J. Mol. Biol. 269, 647-664.
21. Bianchi, M. E., Beltrame, M. & Paonessa, G. (1989) Specific recognition of cruciform DNA by nuclear protein HMG1, Science 243, 1056-1059.
22. Grasser, K. D., Krech, A. B. & Feix, G. (1994) The maize chromosomal HMGa protein recognizes structural features of DNA and increases DNA flexibility, Plant J. 6, 351-358.
23. Bonnefoy, E., Takahashi, M. & Rouviere-Yaniv, J. (1994) DNA-binding parameters of the HU protein of Escherichia coll to cruciform DNA, J. Mol. Biol. 242, 116-129.
24. Ferrari, S., Harley, V. R., Pontiggia, A., Goodfellow, P. N., LovellBadge, R. & Bianchi, M. E. (1992) SRY, like HMG1, recognizes sharp angles in DNA, EMBO J. 11, 4497-4506.
25. Pontiggia, A., Negri, A., Beltrame, M. & Bianchi, M. E. (1993) Protein HU binds specifically to kinked DNA, Mol. Microbiol. 7, 343-350.
26. Varga-Weisz, P., Zlatanova, J., Leuba, S. H., Schroth, G. P. & van Holde, K. (1994) Binding of histones HI and H5 and their globu-lar domains to four-way junction DNA, Proc. NallAcad. Sei. USA 91, 3525-3529.
27. Hill, D. A. & Reeves, R. (1997) Competition between HMG-I(Y), HMG-1 and histone HI on four-way junction DNA, Nucleic Acids Res. 25, 3523-3531.
28. Varga-Weisz, P., van Holde, K. & Zlatanova, J. (1993) Preferential binding of histone HI to four-way helical junction DNA, J. Biol. Chem. 268, 20699-20700.
29. Weeks, K. M. & Crothers, D. M. (1992) RNA binding assays for Tat-derived peptides: implications for specificity, Biochemistry 31, 10281-10287.
30. Clegg, R. M., Murchie, A. I. H. & Lilley, D. M. J. (1994) The solution structure of the four-way DNA junction at low salt concentration; a fluorescence resonance energy transfer analysis, Biophys. 7.66, 99-109.
31. Tullius, T. D. (1991) DNA footprinting with the hydroxyl radical, Free Radie. Res. Connus 12-13, 521-529.
32. Bennett, R. J. & West, S. C. (1995) Structural analysis of the RuvCHolliday junction complex reveals an unfolded junction, J. Mot. Biol. 252, 213-226.
33. White, M. F. & Lilley, D. M. J. (1997) The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction, J. Mol. Biol. 266, 122-134.
34. Pöhler, J. R., Norman, D. G., Bramham, J., Bianchi, M. & Lilley, D. M. J. (1998) HMG box proteins bind to four-way junctions in their open conformation, EMBO J. 17, 817-826.
35. Hensel, R. & König, H. (1988) Thermoadaptation of methanogenic bacteria by intracellular ion concentration, FEMS Microbiol. Lett. 49, 75-79.
36. Rice, J. A. & Crothers, D. M. (1989) DNA bending by bulge defect, Biochemistry 28, 4512-4516.
37. Lilley, D. M. J. (1995) Kinking of DNA and RNA by base bulges, Proc. NatlAcad. Sei. USA 92, 7140-7142.
38. Grove, A., Figueiredo, M. L., Galeone, A., Mayol, L. & Geiduschek, P. E. (1997) Twin hydroxymethyluracil-A base pair steps define the binding site for the DNA-bending protein TF1, J. Biol. Client. 272, 13084-13087.
39. Payet, D. & Travers, A. (1997) The acidic tail of the high mobility group protein HMG-D modulates the structural selectivity of DNA binding, J. Mol. Biol. 266, 66-75.
40. Aboul-ela, F., Murchie, A. I. H., Homans, S. W. & Lilley, D. M. J. (1993) Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge, J. Mol. Biol. 229, 173-188.
41. Lilley, D. M. J. (1992) HMG has DNA wrapped up, Nature 357, 282-283.