Association between DNA cleavage during apoptosis and regions of chromatin replication

Journal of Cellular Biochemistry

Volumn 70, Issue 4, 1998, Pages 604-615

  Khodarev, Nikolai N ^a   Sokolova, Irina A ^a   Vaughan, Andrew T M ^a  

^a LOYOLA UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Apoptosis; Bal 31; DNA cleavage; DNA replication; Endonuclease; Topological domains

Indexed keywords

APOPTOSIS; ARTICLE; CHROMATIN STRUCTURE; CONTROLLED STUDY; DNA CLEAVAGE; DNA REPLICATION; DNA STRAND BREAKAGE; HUMAN; HUMAN CELL; INTERPHASE; PRIORITY JOURNAL;

APOPTOSIS; CELL LINE; CELL NUCLEUS; CHROMATIN; DNA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FLOW CYTOMETRY; HUMANS; MOLECULAR WEIGHT;

EID: 0032531279     PISSN: 07302312     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-4644(19980915)70:4<604::AID-JCB16>3.0.CO;2-G     Document Type: Article

References (35)

1. Barton MC, Madani N, Emerson BM (1997): Distal enhancer regulation by promoter derepression in topologically constrained DNA in vitro. Proc Natl Acad Sci USA 94:7257-7262.
2. Beere HM, Chresta CM, Alejo-Herberg A, Skladanowski A, Dive C, Larsen AK, Hickman JA (1995): Investigation of the mechanism of higher order chromatin fragmentation observed in drug-induced apoptosis. Mol Pharmacol 47: 986-996.
3. Cain K, Inayat-Hussain SH, Kokileva L, Cohen GM (1995): Multi-step DNA cleavage in rat liver nuclei is inhibited by thiol reactive agents. FEBS Letters 358:255-261.
4. Carrier F, Bae I, Smith ML, Ayers DM, Fornace AJ Jr (1996): Characterization of the GADD45 response to ionizing radiation in WI-L2-NS cells, a p53 mutant cell line. Mutat Res 352:79-86.
5. Cook PR (1995): A chromomeric model for nuclear and chromosome structure. J Cell Sci 108:2927-2935.
6. Cook PR (1997): The transcriptional basis of chromosome pairing. J Cell Sci 110:1033-1040.
7. Cremer C, Munkel C, Granzow M, Jauch A, Dietzel S, Eils R, Guan XY, Meltzer PS, Trent JM, Langowski J, Cremer T (1996): Nuclear architecture and the induction of chromosomal aberrations. Mutat Res 366:97-116.
8. Dijkwel PA, Hamlin JL (1995): Origins of replication and the nuclear matrix: the DHFR domain as a paradigm. Int Rev Cytol 162A:455-484.
9. Dillon N, Grosveld F (1994): Chromatin domains as potential units of eukaryotic gene function. Curr Opin Genet Dev 4:260-264.
10. Filipski J, Leblanc J, Youdale T, Sikorska M, Walker PR (1990): Periodicity of DNA folding in higher order chromatin structures. EMBO J 9:1319-1327.
11. Gohring S, Schwab BL, Nicotera P, Leist M, Fackelmayer FO (1997): The novel SAR-binding domain of scaffold-attachment factor A (SAF-A) is a target in apoptotic nuclear breakdown. EMBO J 16:7361-7371.
12. Jackson DA (1995): Nuclear organization: Uniting replication foci, chromatin domains and chromosome structure. Bioessays 17:587-591.
13. Kaufmann SH (1989): Induction of endonucleolytic DNA cleavage in human acute myelogenous leukemia cells by etoposide, camptothecin, and other cytotoxic anticancer drugs: a cautionary note. Cancer Res 49:5870-5878.
14. Khodarev NN, Narayana A, Constantinou A, Vaughan ATM (1997): Topologically constrained domains of supercoiled DNA in eukaryotic cells. DNA Cell Biol 16:1051-1058.
15. Kunnev D. Tsvetkov L. Anachkova B. Russev G (1997): Clusters of replicons that fire simultaneously may be organized into superloops. DNA Cell Biol. 16:1059-1065.
16. Lavin MF, Bates P, Le Poidevin P, Chen PC (1989): Normal inhibition of DNA synthesis following gamma-irradiation of radiosensitive cell lines from patients with Down's syndrome and Alzheimer's disease. Mutat Res 218: 41-47.
17. Lown JW, Sondhi SM, Ong CW, Skorobogaty A, Kishikawa H, Dabrowiak JC (1986): Deoxyribonucleic acid cleavage specificity of a series of acridine- and acodazole-iron porphyrins as functional bleomycin models. Biochemistry 25:5111-5117.
18. Lu T, Gray HB Jr (1995): Kinetics and mechanism of BAL 31 nuclease action on small substrates and single-stranded DNA. Biochim Biophys Acta 1251:125-128.
19. Marshall WF, Dernburg AF, Harmon B, Agard DA, Sedat JW (1996): Specific interactions of chromatin with the nuclear envelope: Positional determination within the nucleus in Drosophila melanogaster. Mol Biol Cell 7:825-842.
20. Mcconnell KR, Dynan WS, Hardin JA (1997): The DNA-dependent protein kinase catalytic subunit (p460) is cleaved during Fas-mediated apoptosis in Jurkat cells. J Immunol 158:2083-2089.
21. Milner AE, Gordon DJ, Turner BM, Vaughan AT (1993): A correlation between DNA-nuclear matrix binding and relative radiosensitivity in two human squamous cell carcinoma cell lines. Int J Radiat Biol 63:13-20.
22. Mirkovitch J, Gasser SM, Laemmli UK (1988): Scaffold attachment of DNA loops in metaphase chromosomes. J Mol Biol 200:101-109.
23. Montague JW, Cidlowski JA (1996): Cellular catabolism in apoptosis - DNA degradation and endonuclease activation.Experientia 52: 957-962.
24. Nakamura H, Morita T, Sato C (1986): Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus. Exp Cell Res 165: 291-297.
25. Neiman PE, Blish C, Heydt C, Loring G, Thomas SJ (1994): Loss of cell cycle controls in apoptotic lymphoblasts of the bursa of Fabricius. Mol Biol Cell 5:763-772.
26. Nickerson JA, Blencowe BJ, Penman S (1995): The architectural organization of nuclear metabolism. Int Rev Cytol 162A:67-123.
27. Saitoh Y, Laemmly UK (1993): From the chromosomal loops and the scaffold to the classic bands of metaphase chromosomes. Cold Spring Harb Symp Quant Biol 58:755-765.
28. Sanchez Y, Elledge SJ (1995): Stopped for repairs. Bioessays 17:545-548
29. Sestili P, Cattabeni F, Cantoni O (1996): Direct excision of 50 kb pair DNA fragments from megabase-sized fragments produced during apoptotic cleavage of genomic DNA. FEBS Letters 396:337-342.
30. 2+ -dependent endonuclease activation is an early event in VP-16-induced apoptosis of human breast cancer MCF7 cells in vitro. Biochim Biophys Acta 1266:135-142.
31. Solovyan VT. Andreev IQ, Kolotova TY, Pogribniy PV, Tarnavsky DT, Kunakh VA (1997): The cleavage of nuclear DNA into high molecular weight DNA fragments occurs not only during apoptosis but also accompanies changes in functional activity of the nonapoptotic cells. Exp Cell Res 235:130-137.
32. Song QZ, Lu H, Zhang N, Luckow B, Shah G, Poirier G, Lavin M (1997): Specific cleavage of the large subunit of replication factor C in apoptosis is mediated by CPP32-like protease. Biochem Biophys Res Commun 233:343-348.
33. Walker PR, Kokileva L, LeBlanc J, Sikorska M (1993): Detection of the initial stages of DNA fragmentation in apoptosis. Biotechniques 15:1032-1040.
34. Wu S, Yang Y, Sadegh-Nasseri S, Ashwell JD (1993): Use of bispecific heteroconjugated antibodies (anti-T cell antigen receptor x anti-MHC class II) to study activation of T cells with a full length or truncated antigen receptor zeta-chain. J Immunol 150:2211-2221.
35. Zhen W. Denault CM. Loviscek K. Walter S. Geng L. Vaughan AT (1995): The relative radiosensitivity of TK6 and WI-L2-NS lymphoblastoid cells derived from a common source is primarily determined by their p53 mutational status. Mutat Res 346:85-92.