-
1
-
-
48749148224
-
A velocity version of the SHAKE algorithm for molecular dynamics simulations
-
Anderson H.C. A velocity version of the SHAKE algorithm for molecular dynamics simulations. J. Comp. Phys. 52:1983;24-34.
-
(1983)
J. Comp. Phys.
, vol.52
, pp. 24-34
-
-
Anderson, H.C.1
-
2
-
-
0001128624
-
Electrochemistry of c-type cytochromes: Electrode reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough
-
Bianco P., Haladjian J., Pilard R. Electrochemistry of c-type cytochromes: electrode reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough. J. Electroanal. Chem. 136:1982;291-299.
-
(1982)
J. Electroanal. Chem.
, vol.136
, pp. 291-299
-
-
Bianco, P.1
Haladjian, J.2
Pilard, R.3
-
3
-
-
0029918864
-
Comparison of low oxidoreduction potential cytochrome c553 from Desulfovibrio vulgaris with the class I cytochrome family
-
Blackledge M.J., Guerlesquin F., Marion D. Comparison of low oxidoreduction potential cytochrome c553 from Desulfovibrio vulgaris with the class I cytochrome family. Prot.: Struct. Funct. and Gen. 24:1996;195-208.
-
(1996)
Prot.: Struct. Funct. and Gen.
, vol.24
, pp. 195-208
-
-
Blackledge, M.J.1
Guerlesquin, F.2
Marion, D.3
-
4
-
-
0028967041
-
Structure and dynamics of ferrocytochrome c553 from Desulfovibrio vulgaris by NMR spectroscopy and restrained molecular dynamics
-
Blackledge M.J., Medvedeva S., Poncin S., Guerlesquin M., Bruschi F., Marion D. Structure and dynamics of ferrocytochrome c553 from Desulfovibrio vulgaris by NMR spectroscopy and restrained molecular dynamics. J. Mol. Biol. 245:1995;661-681.
-
(1995)
J. Mol. Biol.
, vol.245
, pp. 661-681
-
-
Blackledge, M.J.1
Medvedeva, S.2
Poncin, S.3
Guerlesquin, M.4
Bruschi, F.5
Marion, D.6
-
5
-
-
0027135220
-
Overexpression of D. vulgaris Hildenborough cytochrome c553 in D.desulfuricans G200
-
Blanchard L., Marion D., Pollock B., Voordouw G., Wall J., Bruschi M., Guerlesquin F. Overexpression of D. vulgaris Hildenborough cytochrome c553 in D.desulfuricans G200. Eur. J. Biochem. 218:1993;293-301.
-
(1993)
Eur. J. Biochem.
, vol.218
, pp. 293-301
-
-
Blanchard, L.1
Marion, D.2
Pollock, B.3
Voordouw, G.4
Wall, J.5
Bruschi, M.6
Guerlesquin, F.7
-
6
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
Bushnell G.W., Louie G.V., Brayer G.D. High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 214:1990;585-595.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
-
7
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly M.L. Solvent-accessible surfaces of proteins and nucleic acids. Science. 221:1983;709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
8
-
-
0026351132
-
Redox and flavin-binding properties of recombinant flavodoxin from Desulfovibrio vulgaris (Hildenborough)
-
Curley P., Carr M.C., Mayhew S.G., Voordouw G. Redox and flavin-binding properties of recombinant flavodoxin from Desulfovibrio vulgaris (Hildenborough). Eur. J. Biochem. 202:1991;1091-1100.
-
(1991)
Eur. J. Biochem.
, vol.202
, pp. 1091-1100
-
-
Curley, P.1
Carr, M.C.2
Mayhew, S.G.3
Voordouw, G.4
-
10
-
-
0025835432
-
Engineering proteins, subcloning and hyperexpressing oxidoreductase genes
-
Darwish K., Li H., Poulos T.L. Engineering proteins, subcloning and hyperexpressing oxidoreductase genes. Prot. Eng. 4(6):1991;701-708.
-
(1991)
Prot. Eng.
, vol.4
, Issue.6
, pp. 701-708
-
-
Darwish, K.1
Li, H.2
Poulos, T.L.3
-
11
-
-
0028807577
-
Structural domains of P450-containing monooxygenase systems
-
Degtyarenko K.N. Structural domains of P450-containing monooxygenase systems. Prot. Eng. 8(8):1995;737-747.
-
(1995)
Prot. Eng.
, vol.8
, Issue.8
, pp. 737-747
-
-
Degtyarenko, K.N.1
-
12
-
-
0015526741
-
On the importance of the N-5 position in flavin coenzymes. Properties of free and protein-bound 5-deaza analogs
-
Edmonson D.E., Barman B., Tollin G. On the importance of the N-5 position in flavin coenzymes. Properties of free and protein-bound 5-deaza analogs. Biochemistry. 11(7):1972;1133-1138.
-
(1972)
Biochemistry
, vol.11
, Issue.7
, pp. 1133-1138
-
-
Edmonson, D.E.1
Barman, B.2
Tollin, G.3
-
13
-
-
0030960888
-
The domain architecture of cytochrome P450BM-3
-
Govindaraj S., Poulos T. The domain architecture of cytochrome P450BM-3. J. Biol. Chem. 272:1997;7915-7921.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 7915-7921
-
-
Govindaraj, S.1
Poulos, T.2
-
14
-
-
0024320468
-
Direct electron transfer of redox proteins at the bare glassy carbon electrode
-
Hagen W.R. Direct electron transfer of redox proteins at the bare glassy carbon electrode. Eur. J. Biochem. 182:1989;523-530.
-
(1989)
Eur. J. Biochem.
, vol.182
, pp. 523-530
-
-
Hagen, W.R.1
-
15
-
-
0030103517
-
Complex electrochemistry of flavodoxin at carbon-based electrodes: Results from a combination of direct electron transfer, flavin-mediated electron transfer and comproportionation
-
Heering H.A., Hagen W.R. Complex electrochemistry of flavodoxin at carbon-based electrodes: results from a combination of direct electron transfer, flavin-mediated electron transfer and comproportionation. J. Electronalytical Chem. 404:1996;249-260.
-
(1996)
J. Electronalytical Chem.
, vol.404
, pp. 249-260
-
-
Heering, H.A.1
Hagen, W.R.2
-
16
-
-
0024297216
-
Cloning, nucleotide sequence, and expression of the flavodoxin gene from Desulfovibrio vulgaris (Hildenborough)
-
Krey G.D., Vanin E.F., Swenson R.P. Cloning, nucleotide sequence, and expression of the flavodoxin gene from Desulfovibrio vulgaris (Hildenborough). J. Biol. Chem. 263(30):1988;15436-15443.
-
(1988)
J. Biol. Chem.
, vol.263
, Issue.30
, pp. 15436-15443
-
-
Krey, G.D.1
Vanin, E.F.2
Swenson, R.P.3
-
17
-
-
0023279778
-
Direct electron transfer reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough at indium oxide electrodes
-
Koller K.B., Hawkridge F.M., Fauque G., LeGall J. Direct electron transfer reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough at indium oxide electrodes. Biochem. Biophys. Res. Commun. 145(1):1987;619-624.
-
(1987)
Biochem. Biophys. Res. Commun.
, vol.145
, Issue.1
, pp. 619-624
-
-
Koller, K.B.1
Hawkridge, F.M.2
Fauque, G.3
Legall, J.4
-
18
-
-
0000243829
-
PROCHECK: A programme to check the stereochemical quality of protein structure
-
Laskowski R.A., MacArthur M.W., Moss D.S., Thornton J.M. PROCHECK: a programme to check the stereochemical quality of protein structure. J. Appl. Cryst. 26:1993;283-291.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
20
-
-
0031013972
-
The structure of cytochrome p450BM3 haem domain complexed with the fatty acid substrate, palmitoleic acid
-
Li H., Poulos T. The structure of cytochrome p450BM3 haem domain complexed with the fatty acid substrate, palmitoleic acid. Nature Struct. Biol. 4(2):1997;140-146.
-
(1997)
Nature Struct. Biol.
, vol.4
, Issue.2
, pp. 140-146
-
-
Li, H.1
Poulos, T.2
-
21
-
-
0023041964
-
Comparison of beef liver and Penicillium vitale catalases
-
Melik-Adamyan W.R., Barynin V.V., Vagin A.A., Borisov V.V., Vainshtein B.K. Comparison of beef liver and Penicillium vitale catalases. J. Mol. Biol. 188:1986;63-72.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 63-72
-
-
Melik-Adamyan, W.R.1
Barynin, V.V.2
Vagin, A.A.3
Borisov, V.V.4
Vainshtein, B.K.5
-
22
-
-
0002378364
-
Evolution and classification of c-type cytochromes
-
In: Scott, R.A., Mauk, A.G., (Eds.), University Science Book, Sausalito, California
-
Meyer, T.E., 1996. Evolution and classification of c-type cytochromes. In: Scott, R.A., Mauk, A.G., (Eds.), Cytochrome c: a multidisciplinary approach. University Science Book, Sausalito, California, pp. 33-99.
-
(1996)
Cytochrome C: A Multidisciplinary Approach
, pp. 33-99
-
-
Meyer, T.E.1
-
23
-
-
0026513046
-
Nature of biological electron transfer
-
Moser C.C., Keske J.M., Warncke K., Farid R.S., Dutton P.L. Nature of biological electron transfer. Nature. 355:1992;796-802.
-
(1992)
Nature
, vol.355
, pp. 796-802
-
-
Moser, C.C.1
Keske, J.M.2
Warncke, K.3
Farid, R.S.4
Dutton, P.L.5
-
24
-
-
0022878676
-
Characterization of a catalytically self-sufficient 119,000-Dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium
-
Narhi L.O., Fulco A.J. Characterization of a catalytically self-sufficient 119,000-Dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium. J. Biol. Chem. 261(16):1986;7160-7169.
-
(1986)
J. Biol. Chem.
, vol.261
, Issue.16
, pp. 7160-7169
-
-
Narhi, L.O.1
Fulco, A.J.2
-
25
-
-
0023654954
-
Identification and characterization of two functional domains in cytochrome P-450 BM3, a catalytically self-sufficient monooxigenase induced by barbiturates in Bacillus megaterium
-
Narhi L.O., Fulco A.J. Identification and characterization of two functional domains in cytochrome P-450 BM3, a catalytically self-sufficient monooxigenase induced by barbiturates in Bacillus megaterium. J. Biol. Chem. 262(14):1987;6683-6690.
-
(1987)
J. Biol. Chem.
, vol.262
, Issue.14
, pp. 6683-6690
-
-
Narhi, L.O.1
Fulco, A.J.2
-
26
-
-
0029115790
-
+ reductase, and cytochrome c
-
+ reductase, and cytochrome c. Arch. Biochem. Biophys. 321(1):1995;229-238.
-
(1995)
Arch. Biochem. Biophys.
, vol.321
, Issue.1
, pp. 229-238
-
-
Navarro, J.A.1
Hervás, M.2
Genzor, C.G.3
Cheddar, G.4
Fillat, M.F.5
De La Rosa, M.A.6
Gómez-Moreno, C.7
Cheng, H.8
Xia, B.9
Chae, Y.K.10
Yan, H.11
Wong, B.12
Straus, N.A.13
Markley, J.L.14
Hurley, J.K.15
Tollin, G.16
-
27
-
-
0029030445
-
Site-specific cross-linking as a method for studying intramolecular electron transfer
-
Pappa H.S., Poulos T.L. Site-specific cross-linking as a method for studying intramolecular electron transfer. Biochemistry. 34:1995;6574-6580.
-
(1995)
Biochemistry
, vol.34
, pp. 6574-6580
-
-
Pappa, H.S.1
Poulos, T.L.2
-
28
-
-
0029865348
-
Probing the cytochrome c peroxidase-cytochrome c electron transfer reaction using site specific cross-linking
-
Pappa H.S., Tajbaksh S., Saunders A.J., Pielak G.J., Poulos T.L. Probing the cytochrome c peroxidase-cytochrome c electron transfer reaction using site specific cross-linking. Biochemistry. 35:1996;4837-4845.
-
(1996)
Biochemistry
, vol.35
, pp. 4837-4845
-
-
Pappa, H.S.1
Tajbaksh, S.2
Saunders, A.J.3
Pielak, G.J.4
Poulos, T.L.5
-
30
-
-
0028266845
-
Aerobic expression of the cyf gene encoding cytochrome c553 from Desulfovibrio vulgaris Hildenborough
-
Pollock W.B.R., Voordouw G. Aerobic expression of the cyf gene encoding cytochrome c553 from Desulfovibrio vulgaris Hildenborough. Microbiology. 140:1994;879-887.
-
(1994)
Microbiology
, vol.140
, pp. 879-887
-
-
Pollock, W.B.R.1
Voordouw, G.2
-
31
-
-
0023044638
-
NADPH-cytochrome P-450 oxidoreductase: Flavin mononucleotide and flavin adenine dinucleotide domains evolved from different flavoproteins
-
Porter T.D., Kasper C.B. NADPH-cytochrome P-450 oxidoreductase: flavin mononucleotide and flavin adenine dinucleotide domains evolved from different flavoproteins. Biochemistry. 25:1986;1682-1687.
-
(1986)
Biochemistry
, vol.25
, pp. 1682-1687
-
-
Porter, T.D.1
Kasper, C.B.2
-
32
-
-
0027326717
-
Crystal structure of hemoprotein domain of P450BM3, a prototype for microsomal P450's
-
Ravichandran K.G., Boddupalli S.S., Hasemann C.A., Peterson J.A., Deisenhofer J. Crystal structure of hemoprotein domain of P450BM3, a prototype for microsomal P450's. Science. 261:1993;731-736.
-
(1993)
Science
, vol.261
, pp. 731-736
-
-
Ravichandran, K.G.1
Boddupalli, S.S.2
Hasemann, C.A.3
Peterson, J.A.4
Deisenhofer, J.5
-
33
-
-
0020477023
-
Transient kinetics of electron transfer reactions of flavodoxin: Ionic strength dependence of semiquinone oxidation by cytochrome c, ferricyanide, and ferric ethylenediaminetetraacetic acid and computer modeling of reaction complexes
-
Simondsen R.P., Weber P.C., Salemme F.R., Tollin G. Transient kinetics of electron transfer reactions of flavodoxin: ionic strength dependence of semiquinone oxidation by cytochrome c, ferricyanide, and ferric ethylenediaminetetraacetic acid and computer modeling of reaction complexes. Biochemistry. 21(25):1982;6366-6375.
-
(1982)
Biochemistry
, vol.21
, Issue.25
, pp. 6366-6375
-
-
Simondsen, R.P.1
Weber, P.C.2
Salemme, F.R.3
Tollin, G.4
-
34
-
-
0028106174
-
Dissection of NADPH-cytochrome P450 oxidoreductase into distinct functional domains
-
Smith G.C.M., Tew D.G., Wolf C.R. Dissection of NADPH-cytochrome P450 oxidoreductase into distinct functional domains. Proc. Natl. Acad. Sci. USA. 91:1994;8710-8714.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 8710-8714
-
-
Smith, G.C.M.1
Tew, D.G.2
Wolf, C.R.3
-
35
-
-
0002878518
-
Expression using the T7 RNA polymerase promoter system
-
In: Ausubel, F.A., R.B., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., Struhl, K., (Eds.), Greene publishing and Wiley-Interscience, New York
-
Tabor, S., 1990. Expression using the T7 RNA polymerase promoter system. In: Ausubel, F.A., R.B., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., Struhl, K., (Eds.), Curr. Prot. Molec. Biol. Greene publishing and Wiley-Interscience, New York, pp. 16.2.1-16.2.11.
-
(1990)
Curr. Prot. Molec. Biol.
, pp. 1621-16211
-
-
Tabor, S.1
-
36
-
-
0021766637
-
Electron transfer between flavodoxin semiquinone and c-type cytochromes: Correlations between electrostatically corrected rate constants, redox potential and surface topologies
-
Tollin G., Cheddar G., Watkins J.A., Meyer T.E., Cusanovich M.A. Electron transfer between flavodoxin semiquinone and c-type cytochromes: correlations between electrostatically corrected rate constants, redox potential and surface topologies. Biochemistry. 23:1984;6345-6349.
-
(1984)
Biochemistry
, vol.23
, pp. 6345-6349
-
-
Tollin, G.1
Cheddar, G.2
Watkins, J.A.3
Meyer, T.E.4
Cusanovich, M.A.5
-
37
-
-
0029152775
-
Protein conformational landscapes: Energy minimisation and clustering of a long molecular dynamics trajectory
-
Troyer J.M., Cohen F.E. Protein conformational landscapes: energy minimisation and clustering of a long molecular dynamics trajectory. Prot.: Struct. Func. and Gen. 23:1995;97-110.
-
(1995)
Prot.: Struct. Func. and Gen.
, vol.23
, pp. 97-110
-
-
Troyer, J.M.1
Cohen, F.E.2
-
38
-
-
0031048578
-
Intramolecular electron transfer kinetics of a synthetic flavocytochrome c
-
Twichett M.B., Ferrer J.C., Siddarth P., Mauk A.G. Intramolecular electron transfer kinetics of a synthetic flavocytochrome c. J. Am. Chem. Soc. 119:1997;435-436.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 435-436
-
-
Twichett, M.B.1
Ferrer, J.C.2
Siddarth, P.3
Mauk, A.G.4
-
39
-
-
0028177551
-
Cytochrome c553 from Desulfovibrio vulgaris (Hildenborough). Electrochemical properties and electron transfer with hydrogenase
-
Verhagen M.F.J.M., Wolbert R.B.G., Hagen W.R. Cytochrome c553 from Desulfovibrio vulgaris (Hildenborough). Electrochemical properties and electron transfer with hydrogenase. Eur. J. Biochem. 221:1994;821-829.
-
(1994)
Eur. J. Biochem.
, vol.221
, pp. 821-829
-
-
Verhagen, M.F.J.M.1
Wolbert, R.B.G.2
Hagen, W.R.3
-
41
-
-
0028889166
-
Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas
-
Volbeda A., Charon M.H., Piras C., Hatchikian E.C., Fontecilla-Camps J.C. Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature. 373:1995;580-587.
-
(1995)
Nature
, vol.373
, pp. 580-587
-
-
Volbeda, A.1
Charon, M.H.2
Piras, C.3
Hatchikian, E.C.4
Fontecilla-Camps, J.C.5
-
42
-
-
0030873316
-
Three-dimensional structure of NADPH-cytochrome P450 reductase: Prototype for FMN- And FAD-containing enzymes
-
Wang M., Roberts D.L., Paschke R., Shea T.M., Master B.S.S., Kim J.J.P. Three-dimensional structure of NADPH-cytochrome P450 reductase: prototype for FMN- and FAD-containing enzymes. Proc. Natl. Acad. Sci. USA. 94:1997;8411-8416.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8411-8416
-
-
Wang, M.1
Roberts, D.L.2
Paschke, R.3
Shea, T.M.4
Master, B.S.S.5
Kim, J.J.P.6
-
43
-
-
0025978284
-
Comparison of the crystal structures of a flavodoxin in its three oxidation states at cryogenic temperatures
-
Watt W., Tulinsky A., Swenson R.P., Watenpaugh K.D. Comparison of the crystal structures of a flavodoxin in its three oxidation states at cryogenic temperatures. J. Mol. Biol. 218:1991;195-208.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 195-208
-
-
Watt, W.1
Tulinsky, A.2
Swenson, R.P.3
Watenpaugh, K.D.4
-
44
-
-
0021866350
-
Electrostatic interactions during electron transfer reactions between c-type cytochromes and flavodoxin
-
Weber P.C., Tollin G. Electrostatic interactions during electron transfer reactions between c-type cytochromes and flavodoxin. J. Biol. Chem. 260(9):1985;5568-5573.
-
(1985)
J. Biol. Chem.
, vol.260
, Issue.9
, pp. 5568-5573
-
-
Weber, P.C.1
Tollin, G.2
-
45
-
-
0026735580
-
Nitric oxide synthase is a cytochrome P-450 type hemoprotein
-
White K.A., Marletta M.A. Nitric oxide synthase is a cytochrome P-450 type hemoprotein. Biochemistry. 31:1992;6627-6631.
-
(1992)
Biochemistry
, vol.31
, pp. 6627-6631
-
-
White, K.A.1
Marletta, M.A.2
-
46
-
-
0029823282
-
Rational choice of molecular dynamics simulation parameters through the use of the three-dimensional autocorrelation method
-
Yasri A., Chice L., Haiech J., Grassy G. Rational choice of molecular dynamics simulation parameters through the use of the three-dimensional autocorrelation method. Prot. Eng. 9:1996;959-976.
-
(1996)
Prot. Eng.
, vol.9
, pp. 959-976
-
-
Yasri, A.1
Chice, L.2
Haiech, J.3
Grassy, G.4
-
47
-
-
0028946646
-
Electrostatic effects of surface acidic amino acid residues on the oxidation-reduction potentials of the flavodoxin from Desulfovibrio vulgaris (Hildenborough)
-
Zhou Z., Swenson R.P. Electrostatic effects of surface acidic amino acid residues on the oxidation-reduction potentials of the flavodoxin from Desulfovibrio vulgaris (Hildenborough). Biochemistry. 34:1995;3183-3192.
-
(1995)
Biochemistry
, vol.34
, pp. 3183-3192
-
-
Zhou, Z.1
Swenson, R.P.2
|