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Volumn 32, Issue 3, 1998, Pages 296-303

On the mechanism of human stefin B folding: I. Comparison to homologous stefin A. Influence of pH and trifluoroethanol on the fast and slow folding phases

Author keywords

Cystatins; Cysteine proteinase inhibitors; Human stefin B; Kinetics; Protein folding; Stopped flow CD; Trifluoroethanol

Indexed keywords

CYSTATIN; CYSTEINE PROTEINASE INHIBITOR; STEFIN A; STEFIN B; TRIFLUOROETHANOL;

EID: 0032529366     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(19980815)32:3<296::AID-PROT5>3.0.CO;2-G     Document Type: Article
Times cited : (44)

References (40)
  • 1
    • 0001340839 scopus 로고
    • Kinetics of unfolding and refolding of single-domain proteins
    • Creighton, T.E. (ed.). New York: Freeman
    • Schmid, F.X. Kinetics of unfolding and refolding of single-domain proteins. In: "Protein Folding." Creighton, T.E. (ed.). New York: Freeman, 1992:197-238.
    • (1992) Protein Folding , pp. 197-238
    • Schmid, F.X.1
  • 2
    • 0002940127 scopus 로고
    • The molten globule state
    • Creighton, T.E. (ed.). New York: Freeman
    • Ptitsyn, O.B. The molten globule state. In: "Protein Folding." Creighton, T.E. (ed.). New York: Freeman, 1992:243-300.
    • (1992) Protein Folding , pp. 243-300
    • Ptitsyn, O.B.1
  • 3
    • 0002743771 scopus 로고
    • The contribution of the molten globule model
    • Pain, R.H. (ed.). New York: Oxford University Press
    • Christensen, H, Pain, R.H. The contribution of the molten globule model. In: "Mechanisms of Protein Folding." Pain, R.H. (ed.). New York: Oxford University Press, 1994:55-79.
    • (1994) Mechanisms of Protein Folding , pp. 55-79
    • Christensen, H.1    Pain, R.H.2
  • 4
    • 0002775727 scopus 로고
    • Early stages of protein folding
    • Pain, R.H. (ed.). New York: Oxford University Press
    • Roder, H., Elöve, G. Early stages of protein folding. In: "Mechanisms of Protein Folding." Pain, R.H. (ed.). New York: Oxford University Press, 1994:26-54.
    • (1994) Mechanisms of Protein Folding , pp. 26-54
    • Roder, H.1    Elöve, G.2
  • 5
  • 7
    • 0001849773 scopus 로고
    • Proline isomerization as a rate-limiting step
    • Pain, R.H. (ed.). New York: Oxford University Press
    • Nail, B.T. Proline isomerization as a rate-limiting step. In: "Mechanisms of Protein Folding." Pain, R.H. (ed.). New York: Oxford University Press, 1994:80-103.
    • (1994) Mechanisms of Protein Folding , pp. 80-103
    • Nail, B.T.1
  • 8
    • 0023669402 scopus 로고
    • Rapid formation of secondary structure framework in protein folding studied by stopped-flow circular dichroism
    • Kuwajima, K., Yamaya, H., Miwa, S., Sugai, S., Nagamura, T. Rapid formation of secondary structure framework in protein folding studied by stopped-flow circular dichroism. FEBS Lett. 221:115-118, 1987.
    • (1987) FEBS Lett. , vol.221 , pp. 115-118
    • Kuwajima, K.1    Yamaya, H.2    Miwa, S.3    Sugai, S.4    Nagamura, T.5
  • 10
    • 0002486962 scopus 로고
    • Cysteine proteinase inhibitors of the cystatin superfamily
    • Barrett, A.J., Salvesen, G. (eds.). Amsterdam: Amsterdam
    • Barrett, A.J., Rawlings, N.D., Davies, M.E., Machleidt, W., Salvesen, G., Turk V. Cysteine proteinase inhibitors of the cystatin superfamily. In: "Proteinase Inhibitors." Barrett, A.J., Salvesen, G. (eds.). Amsterdam: Amsterdam, 1986: 515-569.
    • (1986) Proteinase Inhibitors , pp. 515-569
    • Barrett, A.J.1    Rawlings, N.D.2    Davies, M.E.3    Machleidt, W.4    Salvesen, G.5    Turk, V.6
  • 11
    • 0025002175 scopus 로고
    • Cysteine proteinase inhibitors in human cancerous tissues and fluids
    • Lan, T.T., Kokalj-Kunovar, M., Turk, V. Cysteine proteinase inhibitors in human cancerous tissues and fluids. Biol. Chem. Hoppe-Seyler 371:199-203, 1990.
    • (1990) Biol. Chem. Hoppe-Seyler , vol.371 , pp. 199-203
    • Lan, T.T.1    Kokalj-Kunovar, M.2    Turk, V.3
  • 13
    • 13344269666 scopus 로고    scopus 로고
    • Mutations in the gene encoding cystatin B in progressive myoclonus epilepsy (EPMI)
    • Pennacchio, L.A., Lehesjoki, A.E., Stone, N.E., et al. Mutations in the gene encoding cystatin B in progressive myoclonus epilepsy (EPMI). Science 271:1731-1734, 1996.
    • (1996) Science , vol.271 , pp. 1731-1734
    • Pennacchio, L.A.1    Lehesjoki, A.E.2    Stone, N.E.3
  • 14
    • 16944365407 scopus 로고    scopus 로고
    • Identification of mutations in cystatin B, the gene responsible for the Unverricht-Lundborg type of progressive myoclonus epilepsy (EPM1)
    • Lalioti, M.D., Mirotsou, M., Buresi, C., et al. Identification of mutations in cystatin B, the gene responsible for the Unverricht-Lundborg type of progressive myoclonus epilepsy (EPM1). Am. J. Hum. Genet. 60:342-351, 1997
    • (1997) Am. J. Hum. Genet. , vol.60 , pp. 342-351
    • Lalioti, M.D.1    Mirotsou, M.2    Buresi, C.3
  • 15
    • 0025817602 scopus 로고
    • The cystatins: Protein inhibitors of cysteine proteinases
    • Turk, V., Bode, W. The cystatins: Protein inhibitors of cysteine proteinases. FEBS Lett. 285:213-219, 1991.
    • (1991) FEBS Lett. , vol.285 , pp. 213-219
    • Turk, V.1    Bode, W.2
  • 16
    • 0002753975 scopus 로고
    • Lysosomal cysteine proteinases and their inhibitor cystatins
    • Aviles, F.X. (ed.). Berlin: Walter de Gruyter
    • Turk, V., Bode, W. Lysosomal cysteine proteinases and their inhibitor cystatins. In: "Innovations in Proteases and Their Inhibitors." Aviles, F.X. (ed.). Berlin: Walter de Gruyter, 1993:161-178.
    • (1993) Innovations in Proteases and Their Inhibitors , pp. 161-178
    • Turk, V.1    Bode, W.2
  • 17
    • 0347422215 scopus 로고
    • Nomenclature and classification of the protein homologues with the cysteine proteinase inhibitor chicken cystatin
    • Barret, A.J., Fritz, H., Grubb, A., et al. Nomenclature and classification of the protein homologues with the cysteine proteinase inhibitor chicken cystatin. Biochem. J. 236:312, 1986.
    • (1986) Biochem. J. , vol.236 , pp. 312
    • Barret, A.J.1    Fritz, H.2    Grubb, A.3
  • 18
    • 0028937416 scopus 로고
    • The three-dimensional solution structure of human stefin A
    • Martin, J.R., Craven, J.C., Jerala, R., et al. The three-dimensional solution structure of human stefin A. J. Mol. Biol. 246:331-343, 1995.
    • (1995) J. Mol. Biol. , vol.246 , pp. 331-343
    • Martin, J.R.1    Craven, J.C.2    Jerala, R.3
  • 19
    • 0028077339 scopus 로고
    • Structural characterization of human stefin a in solution and implications for binding to cysteine proteinases
    • Martin, J.R., Jerala, R., Kroon-Žitko, L., Žerovnik, E., Turk, V., Waltho, J.P. Structural characterization of human stefin A in solution and implications for binding to cysteine proteinases. Eur. J. Biochem. 225:1181-1194, 1994.
    • (1994) Eur. J. Biochem. , vol.225 , pp. 1181-1194
    • Martin, J.R.1    Jerala, R.2    Kroon-Žitko, L.3    Žerovnik, E.4    Turk, V.5    Waltho, J.P.6
  • 20
    • 0025301658 scopus 로고
    • The refined 2.4 A X-ray crystal structure of recombinant human stefin B in complex with the cysteine proteinase papain: A novel type of proteinase inhibitor interaction
    • Stubbs, M.T., Laber, B., Bode, W., et al. The refined 2.4 A X-ray crystal structure of recombinant human stefin B in complex with the cysteine proteinase papain: A novel type of proteinase inhibitor interaction. EMBO J. 9:1939-1947, 1990.
    • (1990) EMBO J. , vol.9 , pp. 1939-1947
    • Stubbs, M.T.1    Laber, B.2    Bode, W.3
  • 21
    • 0026441229 scopus 로고
    • Calorimetric measurements of thermal denaturation of stefins a and B. Comparison to predicted thermodynamics of stefin B unfolding
    • Žerovnik, E., Lohner, K., Jerala, R., Laggner, P., Turk, V. Calorimetric measurements of thermal denaturation of stefins A and B. Comparison to predicted thermodynamics of stefin B unfolding. Eur. J. Biochem. 210:217-221, 1992.
    • (1992) Eur. J. Biochem. , vol.210 , pp. 217-221
    • Žerovnik, E.1    Lohner, K.2    Jerala, R.3    Laggner, P.4    Turk, V.5
  • 22
    • 0025812725 scopus 로고
    • Folding studies of the cysteine proteinase inhibitor - Human stefin A
    • Žerovnik, E., Lenar čIč, B., Jerala, R., Turk, V. Folding studies of the cysteine proteinase inhibitor - human stefin A. Biochim. Biophys. Acta 1078:313-320, 1991.
    • (1991) Biochim. Biophys. Acta , vol.1078 , pp. 313-320
    • Žerovnik, E.1    Lenar ČIč, B.2    Jerala, R.3    Turk, V.4
  • 23
    • 0026795168 scopus 로고
    • Intermediates in denaturation of a small globular protein, recombinant human stefin B
    • Žerovnik, E., Jerala, R., Kroon-Žitko, L., Pain, R.H., Turk, V. Intermediates in denaturation of a small globular protein, recombinant human stefin B. J. Biol. Chem. 267:9041-9046, 1992.
    • (1992) J. Biol. Chem. , vol.267 , pp. 9041-9046
    • Žerovnik, E.1    Jerala, R.2    Kroon-Žitko, L.3    Pain, R.H.4    Turk, V.5
  • 24
    • 0030974942 scopus 로고    scopus 로고
    • Characterization of the equilibrium intermediates in acid denaturation of human stefin B
    • Žerovnik, E., Jerala, R., Kroon-Žitko, L., Turk, V., Lohner, K. Characterization of the equilibrium intermediates in acid denaturation of human stefin B. Eur. J. Biochem. 245:365-372, 1997.
    • (1997) Eur. J. Biochem. , vol.245 , pp. 365-372
    • Žerovnik, E.1    Jerala, R.2    Kroon-Žitko, L.3    Turk, V.4    Lohner, K.5
  • 25
    • 0029740071 scopus 로고    scopus 로고
    • Non-native helical intermediate in the refolding of lactoglobulin, a predominantly sheet protein
    • Hamada, D, Segawa, S., Goto, Y. Non-native helical intermediate in the refolding of lactoglobulin, a predominantly sheet protein. Nature Struct. Biol. 3:868-873, 1996.
    • (1996) Nature Struct. Biol. , vol.3 , pp. 868-873
    • Hamada, D.1    Segawa, S.2    Goto, Y.3
  • 26
    • 0031214363 scopus 로고    scopus 로고
    • A comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules
    • Plaxco, K.W., Spitzfaden, C., Campbell, I.D., Dobson, C.M. A comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules. J. Mol. Biol. 270:763-770, 1997.
    • (1997) J. Mol. Biol. , vol.270 , pp. 763-770
    • Plaxco, K.W.1    Spitzfaden, C.2    Campbell, I.D.3    Dobson, C.M.4
  • 27
    • 0039825244 scopus 로고
    • Analysis of protein folding by protein ingeneering
    • Pain, R.H. (ed.). New York: Oxford University Press
    • Matouschek, A., Serrano, L., Ferscht, A.R. Analysis of protein folding by protein ingeneering. In: "Mechanisms of Protein Folding." Pain, R.H. (ed.). New York: Oxford University Press, 1994:137-159.
    • (1994) Mechanisms of Protein Folding , pp. 137-159
    • Matouschek, A.1    Serrano, L.2    Ferscht, A.R.3
  • 28
    • 0030623382 scopus 로고    scopus 로고
    • Conformational transitions provoked by organic solvents in β-lactoglobulin: Can a molten globule like intermediate be introduced by the decrease in dielectric constant?
    • Uversky, V.N., Narizhneva, N.V., Kirschstein, S.O., Winter, S., Löber, G. Conformational transitions provoked by organic solvents in β-lactoglobulin: Can a molten globule like intermediate be introduced by the decrease in dielectric constant? Folding Design 2:163-172 ,1997.
    • (1997) Folding Design , vol.2 , pp. 163-172
    • Uversky, V.N.1    Narizhneva, N.V.2    Kirschstein, S.O.3    Winter, S.4    Löber, G.5
  • 29
    • 3543017700 scopus 로고    scopus 로고
    • Modeling of the molten globule state of proteins near membranes
    • Ptitsyn, O.B., Bychkova, V., Dujsekina, A., et al. Modeling of the molten globule state of proteins near membranes (abstract). Protein Eng. (Suppl) 10:32, 1997.
    • (1997) Protein Eng. (Suppl) , vol.10 , pp. 32
    • Ptitsyn, O.B.1    Bychkova, V.2    Dujsekina, A.3
  • 30
    • 0028978422 scopus 로고
    • Thifluoroethanol-induced stabilization of the α-helical structure of β-lactoglobulin: Implications for non-hierarchical protein folding
    • Shiraki., K., Nishikawa, K., Goto, Y. Thifluoroethanol-induced stabilization of the α-helical structure of β-lactoglobulin: Implications for non-hierarchical protein folding. J. Mol. Biol. 245:180-194, 1995.
    • (1995) J. Mol. Biol. , vol.245 , pp. 180-194
    • Shiraki, K.1    Nishikawa, K.2    Goto, Y.3
  • 31
    • 0030593499 scopus 로고    scopus 로고
    • Native-like structure in a trifluoroethanol-induced partially folded state of the all-β-sheet protein tendamistat
    • Schönbrunner, N., Wey, J., Engels, J., Georg, H., Kiefhaber, T. Native-like structure in a trifluoroethanol-induced partially folded state of the all-β-sheet protein tendamistat. J. Mol. Biol. 260:432-445, 1996.
    • (1996) J. Mol. Biol. , vol.260 , pp. 432-445
    • Schönbrunner, N.1    Wey, J.2    Engels, J.3    Georg, H.4    Kiefhaber, T.5
  • 32
    • 0031580203 scopus 로고    scopus 로고
    • The equilibrium intermediate of β-lactoglobulin with non-native α-helical structure
    • Hamada, D., Goto, Y. The equilibrium intermediate of β-lactoglobulin with non-native α-helical structure. J. Mol. Biol. 269:479-487, 1997.
    • (1997) J. Mol. Biol. , vol.269 , pp. 479-487
    • Hamada, D.1    Goto, Y.2
  • 33
    • 0030943939 scopus 로고    scopus 로고
    • Molten globule state of equine β-lactoglobulin
    • Ikeguchi, M., Kato, S., Shimizu, A., Sugai, S. Molten globule state of equine β-lactoglobulin. Proteins 27:567-575,1997.
    • (1997) Proteins , vol.27 , pp. 567-575
    • Ikeguchi, M.1    Kato, S.2    Shimizu, A.3    Sugai, S.4
  • 34
    • 0031575421 scopus 로고    scopus 로고
    • Acceleration of the folding of hen lysozyme by trifluoroethanol
    • Lu, H., Buck, M., Radford, S.E., Dobson, C.M. Acceleration of the folding of hen lysozyme by trifluoroethanol. J. Mol. Biol. 265:112-117, 1997.
    • (1997) J. Mol. Biol. , vol.265 , pp. 112-117
    • Lu, H.1    Buck, M.2    Radford, S.E.3    Dobson, C.M.4
  • 35
    • 0023733116 scopus 로고
    • Cloning a synthetic gene for human stefin B and its expression in E. coli
    • Jerala, R., Trstenjak, M., LenarčIč, B., Turk, V. Cloning a synthetic gene for human stefin B and its expression in E. coli. FEBS Lett. 239:41-44, 1988.
    • (1988) FEBS Lett. , vol.239 , pp. 41-44
    • Jerala, R.1    Trstenjak, M.2    LenarčIč, B.3    Turk, V.4
  • 36
    • 0028369985 scopus 로고
    • Improved expression and evaluation of polyethyleneimine precipitation in isolation of recombinant cysteine proteinase inhibitor stefin B
    • Jerala, R., Kroon-Žitko, L., Turk, V. Improved expression and evaluation of polyethyleneimine precipitation in isolation of recombinant cysteine proteinase inhibitor stefin B. Protein Ex. Pur. 5:65-69, 1994.
    • (1994) Protein Ex. Pur. , vol.5 , pp. 65-69
    • Jerala, R.1    Kroon-Žitko, L.2    Turk, V.3
  • 37
    • 0026244229 scopus 로고    scopus 로고
    • Molscript - A program to produce both detailed and schematic plots of protein structures
    • 991
    • Kraulis, P.J. Molscript - a program to produce both detailed and schematic plots of protein structures. J. Appl. Chrystallogr. 24:946-950,991.
    • J. Appl. Chrystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 38
    • 0028447768 scopus 로고
    • Elucidating the folding problem of helical peptides using empirical parameters
    • Muñoz, V., Serrano, L. Elucidating the folding problem of helical peptides using empirical parameters. Nature Struct. Biol. 1:399-409,1994.
    • (1994) Nature Struct. Biol. , vol.1 , pp. 399-409
    • Muñoz, V.1    Serrano, L.2
  • 39
    • 0028873081 scopus 로고
    • Elucidating the folding problem of α-helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides
    • Muñoz, V., Serrano, L. Elucidating the folding problem of α-helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides. J. MoL. Biol. 245:275-296, 1994.
    • (1994) J. Mol. Biol. , vol.245 , pp. 275-296
    • Muñoz, V.1    Serrano, L.2
  • 40
    • 0028834210 scopus 로고
    • Elucidating the folding problem of α-helical peptides using empirical parameters. III: Temperature and pH dependence
    • Muñoz, V., Serrano, L. Elucidating the folding problem of α-helical peptides using empirical parameters. III: Temperature and pH dependence. J. Mol. Biol. 245:297-308, 1994.
    • (1994) J. Mol. Biol. , vol.245 , pp. 297-308
    • Muñoz, V.1    Serrano, L.2


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