Gene mapping in zebrafish using single-strand conformation polymorphism analysis

Genomics

Volumn 51, Issue 2, 1998, Pages 216-222

  Förnzler, Dorothee ^a   Her, Helen ^a   Knapik, Ela W ^b   Clark, Matthew ^c   Lehrach, Hans ^c   Postlethwait, John H ^d   Zon, Leonard I ^e   Beier, David R ^a  

^a BRIGHAM AND WOMEN S HOSPITAL   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

^c MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^d UNIVERSITY OF OREGON   (United States)

^e BOSTON CHILDREN S HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; DATA ANALYSIS; DNA DETERMINATION; EMBRYO DEVELOPMENT; GENE LOCATION; GENE MAPPING; GENETIC ANALYSIS; GENETIC POLYMORPHISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SINGLE STRAND CONFORMATION POLYMORPHISM; ZEBRA FISH;

ANIMALIA; DANIO RERIO; VERTEBRATA;

EID: 0032528122     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5386     Document Type: Article

References (19)

1. Beier D. R. Single-strand conformation polymorphism (SSCP) analysis as a tool for genetic mapping. Mamm. Genome. 4:1993;627-631.
2. Beier D. R., Dushkin H., Sussman D. J. Mapping genes in the mouse using single-strand conformation polymorphism analysis of recombinant inbred strains and interspecific crosses. Proc. Natl. Acad. Sci. USA. 89:1992;9102-9106.
3. Brady K., Rowe L. B., Her H., Stevens T. J., Eppig J., Sussman D. J., Sikela J., Beier D. R. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism (SSCP) analysis. Genome Res. 7:1997;1085-1093.
4. Driever W., Stemple D., Schier A., Solnica-Krezel L. Zebrafish: Genetic tools for studying vertebrate development. Trends Genet. 10:1994;152-159.
5. Driever W., Solnica-Krezel L., Schier A. F., Neuhauss S. C. F., Malicki J., Stemple D. L., Stainier D. Y. R., Zwartkruis F., Abdelilah S., Rangini Z., Belak J., Boggs C. A genetic screen for mutations affecting embryogenesis in zebrafish. Development. 123:1996;37-46.
6. Eppig J. T., Nadeau J. H. Comparative maps: The mammalian jigsaw puzzle. Curr. Opin. Genet. Dev. 5:1995;709-716.
7. Haffter P., Granato M., Brand M., Mullins M. C., Hammerschmidt M., Kane D. A., Odenthal J., van Eden F. J. M., Jiang Y.-J., Heisenberg C.-P., Kelsh R. N., Furutani-Seiki M., Vogelsang E., Beuchle D., Schach U., Fabian C., Nüsslein-Volhard C. The identification of genes with unique and essential functions in the development of the zebrafish,Danio rerio. Development. 123:1996;1-36.
8. Johnson S. L., Africa D., Horne S., Postlethwait J. H. Half-tetrad analysis in zebrafish: Mapping theros. Genetics. 139:1995;1727-1735.
9. Johnson S. L., Gates M. A., Johnson M., Talbot W. S., Horne S., Baik K., Rude S., Wong J. R., Posthlethwait J. H. Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics. 142:1996;1277-1288.
10. Knapik E. W., Goodman A., Atkinson O. S., Roberts C. T., Shiozawa M., Sim C. U., Weksler-Zangen S., Trolliet M. R., Futrell C., Innes B. A., Koike G., McLaughlin M. G., Pierre L., Simon J. S., Vilallonga E., Roy M., Chiang P.-W., Fishman M. C., Driever W., Jacob H. J. A reference cross DNA panel for zebrafish (Danio rerio. Development. 123:1996;451-460.
11. Knapik E. W., Goodman A., Ekker M., Chevrette M., Delgado J., Neuhauss S., Shimoda N., Driever W., Fishman M. C., Jacob H. J. A microsatellite genetic linkage map for zebrafish (Danio rerio). Nat. Genet. 18:1998;338-343.
12. Lincoln, S. E. Daly, M. J. Lander, E. S. 1991, PRIMER: A computer program for automatically selecting PCR primers, http://www.genome.wi.mit.edu:80/genomesoftware/.
13. Mullins M. C., Hammerschmidt M., Haffter P., Nüsslein-Volhard C. Large-scale mutagenesis in the zebrafish: In search of genes controlling development in a vertebrate. Curr. Biol. 4:1994;189-202.
14. Orita M., Suzuki Y., Sekiya T., Hayashi K. Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics. 5:1989;874-879.
15. Postlethwait J. H., Johnson S. L., Midson C. N., Talbot W. S., Gates M., Ballinger E. W., Africa D., Andrews R., Carl T., Eisen J. S., Horne S., Kimmel C. B., Hutchinson M., Johnson M., Rodriguez A. A genetic linkage map for the zebrafish. Science. 264:1994;699-703.
16. Postlethwait J. H., Yan Y.-L., Gates M. A., Horne S., Amores A., Brownlie A., Donovan A., Egan E. S., Force A., Gong Z., Goutel C., Fritz A., Kelsh R., Knapik E., Liao E., Paw B., Ransom D., Singer A., Thomson M., Abduljabbar T. S., Yelick P., Beier D., Joly J.-S., Larhammar D., Rosa F., Westerfield M., Zon L. I., Johnson S. L., Talbot W. S. Vertebrate genome evolution and the zebrafish gene map. Nat. Genet. 18:1998;345-349.
17. Schulte-Merker S., van Eeden F., Halpern M., Kimmel C., Nusslein-Volhard C. no tail(ntl). Development. 120:1994;1009-1015.
18. Sheffield V. C., Beck J. S., Kwitek A. E., Sandstrom D. W., Stone E. M. The sensitivity of single-stranded conformation polymorphism analysis for the detection of single-base substitutions. Genomics. 16:1993;325-332.
19. Soto D., Sukumar S. Improved detection of mutations in the p53 gene in human tumors as single-stranded conformation polymorphs and double-stranded heteroduplex DNA. PCR Methods Appl. 2:1992;96-98.