Identification and mapping of human histone acetylation modifier gene homologues

Genomics

Volumn 51, Issue 2, 1998, Pages 262-269

  Randhawa, Gurvaneet S ^a   Bell, Daphne W ^b   Testa, Joseph R ^b   Feinberg, Andrew P ^a  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b FOX CHASE CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLTRANSFERASE;

ACETYLATION; ARTICLE; CELL PROLIFERATION; CHROMOSOME NOR; DATA BASE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE CONTROL; GENE EXPRESSION; GENE MAPPING; GENETIC ANALYSIS; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE; LEUKEMIA; MAMMAL; PRIORITY JOURNAL;

EUKARYOTA; MAMMALIA;

EID: 0032527778     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5370     Document Type: Article

References (60)

1. Alland L., Muhle R., Hou H. Jr., Potes J., Chin L., Schreiber-Agus N., DePinho R. A. Role for N-CoR and histone deacetylase in Sin3-mediated transcriptional repression. Nature. 387:1997;49-55.
2. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search. J. Mol. Biol. 215:1990;403-410.
3. Arolt V., Lencer R., Nolte A., Muller-Myhsok B., Purmann S., Schurmann M., Leutelt J., Pinnow M., Schwinger E. Eye tracking dysfunction is a putative phenotypic susceptibility marker of schizophrenia and maps to a locus on chromosome 6p in families with multiple occurrence of the disease. Am. J. Med. Genet. 67:1996;564-579.
4. Bannister A. J., Kouzarides T. The CBP co-activator is a histone acetyltransferase. Nature. 384:1996;641-643.
5. Bell D. W., Taguchi T., Jenkins N. A., Gilbert D. J., Copeland N. G., Gilks C. B., Zweidler-McKay P., Grimes H. L., Tsichlis P. N., Testa J. R. Chromosomal localization of a gene, GFI1, encoding a novel zinc finger protein reveals a new syntenic region between man and rodents. Cytogenet. Cell Genet. 70:1995;263-267.
6. Borrow J., Stanton V. P. Jr., Andresen J. M., Becher R., Behm F. G., Chaganti R. S., Civin C. I., Disteche C., Dube I., Frischauf A. M., Horsman D., Mitelman F., Volinia S., Watmore A. E., Housman D. E. The translocation t(8;16)(p11;p13) of acute myeloid leukaemia fuses a putative acetyltransferase to the CREB-binding protein. Nat. Genet. 14:1996;33-41.
7. Brownell J. E., Zhou J., Ranalli T., Kobayashi R., Edmondson D. G., Roth S. Y., Allis C. D. Tetrahymena histone acetyltransferase A: A homolog to yeastGCN5. Cell. 84:1996;843-851.
8. Candau R., Moore P. A., Wang L., Barlev N., Ying C. Y., Rosen C. A., Berger S. L. Identification of proteins functionally conserved with the yeast putative adaptorsADA2GCN5. Mol. Cell. Biol. 16:1996;593-602.
9. Carter K. C., Wang L., Shell B. K., Zamir I., Berger S. L., Moore P. A. The human transcriptional adaptor genes TADA2L and GCN5L1 colocalize to chromosome 17q12-q21 and display similar tissue expression patterns. Genomics. 40:1997;497-500.
10. Carroll A. J., Crist W. M., Link M. P., Amylon M. D., Pullen D. J., Ragab A. H., Buchanan G. R., Wimmer R. S., Vietti T. J. The t(1;14)(p34;q11) is nonrandom and restricted to T-cell acute lymphoblastic leukemia: A Pediatric Oncology Group study. Blood. 76:1990;1220-1224.
11. Chen H., Mirkin D., Yang S. De novo 17q paracentric inversion mosaicism in a patient with Beemer-Langer type short rib-polydactyly syndrome with special consideration to the classification of short rib polydactyly syndromes. Am. J. Med. Genet. 53:1994;165-171.
12. Chen L. C., Matsumura K., Deng G., Kurisu W., Ljung B. M., Lerman M. I., Waldman F. M., Smith H. S. Deletion of two separate regions on chromosome 3p in breast cancers. Cancer Res. 54:1994;3021-3024.
13. Cohn K. H., Ornstein D. L., Wang F., LaPaix F. D., Phipps K., Edelsberg C., Zuna R., Dahiya R., McCarville J., Hu W., Lee C., Chui R. M., Kaur G., Deng G. Chromosome 3p24-26 and 3p22-12 loss in human prostatic adenocarcinoma. Int. J. Cancer. 71:1997;20-25.
14. Csordas A. On the biological role of histone acetylation. Biochem. J. 265:1990;23-38.
15. Dangond F., Hafler D. A., Tong J. K., Randall J., Kojima R., Utku N., Gullans S. R. Differential display cloning of a novel human histone deacetylase (HDAC3) cDNA from PHA-activated immune cells. Biochem. Biophys. Res. Commun. 242:1998;648-652.
16. Dierlamm J., Pittaluga S., Wlodarska I., Stul M., Thomas J., Boogaerts M., Michaux L., Driessen A., Mecucci C., Cassiman J. J., Wolf-Peters C. D., den Berghe H. V. Marginal zone B-cell lymphomas of different sites share similar cytogenetic and morphologic features. Blood. 87:1996;299-307.
17. Emiliani S., Fischle W., Van Lint C., Al-Abed Y., Verdin E. Characterization of a human RPD3 ortholog, HDAC3. Proc. Natl. Acad. Sci. USA. 95:1998;2795-2800.
18. Fan Y-S., Davis L. M., Shows T. B. Mapping small DNA sequences by fluorescence in situ hybridization directly on banded metaphase chromosomes. Proc. Natl. Acad. Sci. 87:1990;6223-6227.
19. Finch J. T., Lutter L. C., Rhodes D., Brown R. S., Rushton B., Levitt M., Klug A. Structure of nucleosome core particles of chromatin. Nature. 269:1977;29-36.
20. Furukawa Y., Kawakami T., Sudo K., Inazawa J., Matsumine A., Akiyama T., Nakamura Y. Isolation and mapping of a human gene (RPD3L1) that is homologous to RPD3, a transcription factor in Saccharomyces cerevisiae. Cytogenet. Cell Genet. 73:1996;130-133.
21. Fontaine B., Nicole S., Topaloglu H., Ben Hamida C., Beighton P., Spaans F., Cantu J. M., Bakouri S., Romero N., Ricker K., Barros-Nunez P., Ponsot G., Ben Hamida M., Weissenbach J., Hentati F., Lehmann-Horn F. Recessive Schwartz-Jampel syndrome (SJS): Confirmation of linkage to chromosome 1p, evidence of genetic homogeneity and reduction of the SJS locus to a 3-cM interval. Hum. Genet. 98:1996;380-385.
22. Gerard B., Cave H., Guidal C., Dastugue N., Vilmer E., Grandchamp B. Delineation of a 6 cM commonly deleted region in childhood acute lymphoblastic leukemia on the 6q chromosomal arm. Leukemia. 11:1997;228-232.
23. Guay-Woodford L. M., Muecher G., Hopkins S. D., Avner E. D., Germino G. G., Guillot A. P., Herrin J., Holleman R., Irons D. A., Primack W., Thompson P. D., Waldo F. B., Lunt P. W., Zerres K. The severe perinatal form of autosomal recessive polycystic kidney disease maps to chromosome 6p21.1-p12: Implications for genetic counseling. Am. J. Hum. Genet. 56:1995;1101-1107.
24. Gurrieri F., Cammarata M., Avarello R. M., Genuardi M., Pomponi M. G., Neri G., Giuffre L. Ulnar ray defect in an infant with a 6q21;7q31.2 translocation: Further evidence for the existence of a limb defect gene in 6q21. Am. J. Med. Genet. 55:1995;315-318.
25. Haupt Y., Bath M. L., Harris A. W., Adams J. M. Bmi-1myc. Oncogene. 8:1993;3161-3164.
26. Hassig C. A., Fleischer T. C., Billin A. N., Schreiber S. L., Ayer D. E. Histone deacetylase activity is required for full transcriptional repression by mSin3A. Cell. 89:1997;341-347.
27. Heinzel T., Lavinsky R. M., Mullen T-M., Söderström M., Laherty C. D., Torchia J., Yang W-M., Brard G., Ngo S. D., Davie J. R., Seto E., Eisenman R. N., Rose D. W., Glass C. K., Rosenfeld M. G. A complex containing N-CoR, mSin3 and histone deacetylase mediates transcriptional repression. Nature. 387:1997;43-48.
28. Heutink P., Stevens M., Rizzu P., Bakker E., Kros J. M., Tibben A., Niermeijer M. F., van Duijn C. M., Oostra B. A., van Swieten J. C. Hereditary frontotemporal dementia is linked to chromosome 17q21-q22: A genetic and clinicopathological study of three Dutch families. Ann. Neurol. 41:1997;150-159.
29. Ingham P. W. Differential expression of bithorax complex genes in the absence of theextra sex combstrithorax. Nature. 306:1983;591-593.
30. Jondeau K., Bouscary D., Viguie F., Picard F., Melle J., Lopez I., Fontenay-Roupie M., Dreyfus F. Thrombocytemia and abnormal megakaryopoiesis associated with abnormality of chromosome 1p34 in myelodysplastic syndromes. Leukemia. 10:1996;1692-1695.
31. Juriloff D. M., Mah D. G. The major locus for multifactorial nonsyndromic cleft lip maps to mouse chromosome 11. Mamm. Genome. 6:1995;63-69.
32. Kadosh D., Struhl K. Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters. Cell. 89:1997;365-371.
33. Kennison J. A., Tamkun J. W. Dosage dependent modifiers ofPolycombAntenapediaDrosophila. Proc. Natl. Acad. Sci. USA. 85:1988;8136-8140.
34. Kennison J. A., Tamkun J. W. Trans-regulation of homeotic genes inDrosophila. New Biol. 4:1992;91-96.
35. Kroef M. J., Bolk M. J., Muus P., Wessels J. W., Beverstock G. C., Willemze R., Landegent J. E. Mosaicism of the 5q deletion as assessed by interphase FISH is a common phenomenon in MDS and restricted to myeloid cells. Leukemia. 11:1997;519-523.
36. Laherty C. D., Yang W-M., Sun J-M., Davie J. R., Seto E., Eisenman R. N. Histone deacetylases associated with the mSin3 corepressor mediate mad transcriptional repression. Cell. 89:1997;349-356.
37. Lennon G., Auffray C., Polymeropoulos M., Soares M. B. The IMAGE consortium: An integrated molecular analysis of genomes and their expression. Genomics. 33:1996;151-152.
38. Leon P. E., Raventos H., Lynch E., Morrow J., King M. C. The gene for an inherited form of deafness maps to chromosome 5q31. Proc. Natl. Acad. Sci. USA. 89:1992;5181-5184.
39. Levitt R. C., Eleff S. M., Zhang L. Y., Kleeberger S. R., Ewart S. L. Linkage homology for bronchial hyperresponsiveness between DNA markers on human chromosome 5q31-q33 and mouse chromosome 13. Clin. Exp. Allergy. 25:1995;61-63.
40. Loidl P. Histone acetylation: Facts and questions. Chromosoma. 103:1994;441-449.
41. Mayer J. L., Seashore M. R., Hajjar F. M. Translocation (5;6) associated with spontaneously remitting congenital leukemia. Cancer Genet. Cytogenet. 81:1995;38-41.
42. Ogryzko V. V., Schiltz R. L., Russanova V., Howard B. H., Nakatani Y. The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell. 87:1996;953-959.
43. Paro R., Hogness D. S. ThePolycombDrosophila. Proc. Natl. Acad. Sci. USA. 88:1991;263-267.
44. Paavola P., Salonen R., Weissenbach J., Peltonen L. The locus for Meckel syndrome with multiple congenital anomalies maps to chromosome 17q21-q24. Nat. Genet. 11:1995;213-215.
45. Petrij F., Giles R. H., Dauwerse H. G., Saris J. J., Hennekam R. C. M., Masuno M., Tommerup N., van Ommen G-J. B., Goodman R. H., Peters D. J. M., Breuning M. H. Rubinstein-Taybi syndrome caused by mutations in the transcriptional co-activator CBP. Nature. 376:1995;348-351.
46. Polymeropoulos M. H., Poush J., Rubenstein J. R., Francomano C. A. Localization of the gene (SYM1) for proximal symphalangism to human chromosome 17q21-q22. Genomics. 27:1995;225-229.
47. Richmond T. J., Finch J. T., Rushton B., Rhodes D., Klug A. Structure of the nucleosome core particle at 7 Å resolution. Nature. 311:1984;532-537.
48. Shugart Y. Y., Banerjee P., Knowles J. A., Lewis C. A., Jacobson S. G., Matise T. C., Penchaszadeh G., Gilliam T. C., Ott J. Fine genetic mapping of a gene for autosomal recessive retinitis pigmentosa on chromosome 6p21. Am. J. Hum. Genet. 57:1995;499-502.
49. Taunton J., Hassig C. A., Schreiber S. L. A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science. 272:1996;408-411.
50. Tkachuk D. C., Kohler S., Cleary M. L. Involvement of a homolog of Drosophila trithorax by 11q23 chromosomal translocations in acute leukemias. Cell. 71:1992;691-700.
51. Turner B. M. Decoding the nucleosome. Cell. 75:1993;5-8.
52. Van der Hout A. H., Van der Lies P., Wijmenga C., Li F. P., Oosterhius J. W., Buys C. H. C. M. The region of common allelic losses in sporadic renal cell carcinoma is bordered by the loci D3S2 and THRB. Genomics. 11:1991;437-542.
53. Wijker M., Wszolek Z. K., Wolters E. C., Rooimans M. A., Pals G., Pfeiffer R. F., Lynch T., Rodnitzky R. L., Wilhelmsen K. C., Arwert F. Localization of the gene for rapidly progressive autosomal dominant parkinsonism and dementia with pallido-ponto-nigral degeneration to chromosome 17q21. Hum. Mol. Genet. 5:1996;151-154.
54. Wlodarska I., De Wolf-Peeters C., Michaux L., Mecucci C., Verhoef G., Cassiman J. J., Van den Berghe H. A new t(2;5) translocation in a null cell type CD30 positive anaplastic large cell lymphoma case. Leukemia. 9:1995;1685-1688.
55. Wolffe A. P. Nucleosome positioning and modification: chromatin structures that potentiate transcription. Trends Biochem. Sci. 19:1994;240-244.
56. Yang W-M., Inouye C., Zeng Y., Bearss D., Seto E. Transcriptional repression by YY1 is mediated by interaction with a mammalian homolog of the yeast global regulator RPD3. Proc. Natl. Acad. Sci. USA. 93:1996;12845-12850.
57. Yang W-M., Yao Y. L., Sun J. M., Davie J. R., Seto E. Isolation and characterization of cDNAs corresponding to an additional member of the human histone deacetylase gene family. J. Biol. Chem. 272:1997;248001-248007.
58. Yang X-J., Ogryzko V. V., Nishikawa J. I., Howard B. H., Nakatani Y. AP300/CBP. Nature. 382:1996;319-324.
59. Yu B. D., Hess J. L., Horning S. E., Brown G. A., Korsmeyer S. J. Altered Hox expression and segmental identity in Mll-mutant mice. Nature. 378:1995;505-508.
60. Zhang Y., Iratni R., Erdjument-Bromage H., Tempst P., Reinberg D. Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell. 89:1997;357-364.