Identification of a human 17p-located cDNA encoding a protein of the Snf2-like helicase family

European Journal of Biochemistry

Volumn 254, Issue 3, 1998, Pages 558-564

  Aubry, Florence ^a,c   Mattéi, Marie Geneviève ^b   Galibert, Francis ^a  

^a CNRS   (France)

^b TIMONE HOSPITAL   (France)

^c INSERM   (France)

Author keywords

Autoimmunity; cDNA; Chromosomal localization; Helicase; Human

Indexed keywords

COMPLEMENTARY DNA; HELICASE;

ARTICLE; AUTOIMMUNITY; CHROMOSOME 17P; DERMATOMYOSITIS; DNA DETERMINATION; GENE LOCATION; GENE LOCUS; GENETIC LINKAGE; HUMAN; MOLECULAR CLONING; NORTHERN BLOTTING; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TRANSCRIPTION REGULATION;

EID: 0032526270     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1998.2540558.x     Document Type: Article

References (48)

1. Carlson, M. & Laurent, B. C. (1994) The SNF/SWI family of global transcriptional activators, Curr. Opin. Cell Biol. 6, 396-402.
2. Bork, P. & Koonin, E. V. (1993) An expanding family of helicases within the 'DEAD/H' superfamily, Nucleic Acids Res. 21, 751-752.
3. Wassarman, D. A. & Steitz, J. A. (1991) RNA splicing. Alive with DEAD proteins, Nature 349, 463-464.
4. Gorbalenya, A. E., Koonin, E. V., Donchenko, A. P. & Blinov, V. M. (1989) Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes, Nucleic Acids Res. 17, 4713-4730.
5. Gorbalenya, A. E. & Koonin, E. V. (1993) helicase: amino acid sequence comparisons and structure-function relationships, Curr. Opin. Struct. Biol. 3, 419-429.
6. Laurent, B. C., Treitel, M. A. & Carlson, M. (1991) Functional interdependence of the yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation, Proc. Natl Acad. Sci. USA 88, 2687-2691.
7. Cairns, B. R., Kim, Y. J., Sayre, M. H., Laurent, B. C. & Kornberg, R. D. (1994) A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast, Proc. Natl Acad. Sci. USA 91, 1950-1954.
8. Peterson, C. L., Dingwall, A. & Scott, M. P. (1994) Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement, Proc. Natl Acad. Sci. USA 91, 2905-2908.
9. Hirschhorn, J. N., Brown, S. A., Clark, C. D. & Winston, F. (1992) Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure, Genes Dev. 6, 2288-2298.
10. Winston, F. & Carlson, M. (1992) Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection, Trends Genet. 8, 387-391.
11. Tamkun, J. W., Deuring, R., Scott, M. P., Kissinger, M., Pattatucci, A. M., Kaufman, T. C. & Kennison, J. A. (1992) brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2, Cell 68, 561-572.
12. Muchardt, C. & Yaniv, M. (1993) A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila brm genes potentiates transcriptional activation by the glucocorticoid receptor, EMBO J. 12, 4279-4290.
13. Khavari, P. A., Peterson, C. L., Tamkun, J. W., Mendel, D. B. & Crabtree, G. R. (1993) BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription, Nature 366, 170-174.
14. Chiba, H., Muramatsu, M., Nomoto, A. & Kato, H. (1994) Two human homologues of Saccharomyces cerevisiae SWI2/SNF2 and Drosophila brahma are transcriptional coactivators cooperating with the estrogen receptor and the retinoic acid receptor, Nucleic Acids Res. 22, 1815-1820.
15. Okabe, I., Bailey, L. C., Attree, O., Srinivasan, S., Perkel, J. M., Laurent, B. C., Carlson, M., Nelson, D. L. & Nussbaum, R. L. (1992) Cloning of human and bovine homologs of SNF2/SWI2: a global activator of transcription in yeast S. cerevisiae, Nucleic Acids Res. 20, 4649-4655.
16. Elfring, L. K., Deuring, R., McCallum, C. M., Peterson, C. L. & Tamkun, J. W. (1994) Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/ SWI2, Mol. Cell Biol. 14, 2225-2234.
17. Eisen, J. A., Sweder, K. S. & Hanawalt, P. C. (1995) Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions, Nucleic Acids Res. 23, 2715-2723.
18. Young, R. A. & Davis, R. W. (1983) Efficient isolation of genes by using antibody probes, Proc. Natl Acad. Sci. USA 80, 1194-1198.
19. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor NY.
20. Baville, F., Ammouri, O., Charpin, C., Della-Valle, V., Soulard, M., Guillemin, M. C., Osinaga, E., Pancino, G., Roseto, A. & Barque, J. P. (1991) Production of a monoclonal antibody (B1N) recognizing human nuclear antigen associated with cell proliferation, CR. Acad. Sci. 312, 301-307.
21. Vautier, D., Besombes, D., Chassoux, D., Aubry, F. & Debey, P. (1994) Redistribution of nuclear antigens linked to cell proliferation and RNA processing in mouse oocytes and early embryos, Mol. Reprod. Dev. 38, 119-130.
22. Kozak, M. (1991) Structural features in eukaryotic mRNAs that modulate the initiation of translation, J. Biol. Chem. 266, 19867-19870.
23. Mount, S. M. (1982) Catalogue splice junction sequences, Nucleic Acids Res. 10, 459-472.
24. Seelig, H. P., Moosbrugger, I., Ehrfeld, H., Fink, T., Renz, M. & Genth, E. (1995) The major dermatomyositis-specific Mi-2 autoantigen is a presumed helicase involved in transcriptional activation, Arthritis Rheum. 38, 1389-1399.
25. Targoff, I. N. (1992) Autoantibodies in polymyositis, Rheum. Dis. Clin. North Am. 18, 455-482.
26. Wilson, R., Ainscough, R., Anderson, K., Baynes, C., Berks, M., Bonfield, J., Burton, J., Connell, M., Copsey, T., Couper, J., et al. (1994) 2.2 Mb of contiguous nucleotide sequence from chromosiome III of C. elegans, Nature 368, 32-38.
27. Ge, Q., Nilasena, D. S., O'Brien, C. A., Frank, M. B. & Targoff, I. N. (1995) Molecular analysis of a major antigenic region of the 240-kD protein of Mi-2 autoantigen, J. Clin. Invest. 96, 1730-1737.
28. Troelstra, C., van Gool, A., de Wit, J., Vermeulen, W., Bootsma, D. & Hoeijmakers, J. H. (1992) ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes, Cell 71, 939-953.
29. Brendel, V. & Karlin, S. (1989) Association of charge clusters with functional domains of cellular transcription factors, Proc. Natl Acad. Sci. USA 86, 5698-5702.
30. Haynes, S. R., Dollard, C., Winston, F., Beck, S., Trowsdale, J. & Dawid, I. B. (1992) The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins, Nucleic Acids Res. 20, 2603.
31. Delmas, V., Stokes, D. C. & Perry, R. P. (1993) A mammalian DNA-binding protein that contains a chromodomain and an SNF2/ SWI2-like helicase domain, Proc. Natl Acad. Sci. USA 90, 2414-2418.
32. Stokes, D. G., Tartof, K. D. & Perry, R. P. (1996) CHD1 is concentrated in interbands and puffed regions of Drosophila polytene chromosomes, Proc. Natl Acad. Sci. USA 93, 7137-7142.
33. Coleman, J. E. (1992) Zinc proteins: enzymes, storage proteins, transcription factors, and replication proteins, Annu. Rev. Biochem. 61, 897-946.
34. Dingwall, C. & Laskey, R. A. (1991) Nuclear targeting sequences a consensus? Trends Biochem. Sci. 16, 478-481.
35. Robbins, J., Dilworth, S. M., Laskey, R. A. & Dingwall, C. (1991) Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: identification of a class of bipartite nuclear targeting sequence, Cell 64, 615-623.
36. Rihs, H. P., Jans, D. A., Fan, H. & Peters, R. (1991) The rate of nuclear cytoplasmic protein transport is determined by the casein kinase II site flanking the nuclear localization sequence of the SV40 T-antigen, EMBO J, 140, 633-639.
37. Mattei, M. G., Philip, N., Passage, E., Moisan, J. P., Mandel, J. L. & Mattei, J. F. (1985) DNA probe localization at 18p113 band by in situ hybridization and identification of a small supernumerary chromosome, Hum. Genet. 69, 268-271.
38. Tsuchiya, E., Uno, M., Kiguchi, A., Masuoka, K., Kanemori, Y., Okabe, S. & Mikayawa, T. (1992) The Saccharomyces cerevisiae NPS1 gene, a novel CDC gene which encodes a 160 kDa nuclear protein involved in G2 phase control, EMBO J. 11, 4017-4026.
39. Calsou, P., Muller, C., Frit, P. & Salles, B. (1996) Ku protein complex is involved in nucleotide excision repair of DNA, CR. Acad. Sci. 319, 179-182.
40. Stack, M., Jones, D., White, G., Liscia, D. S., Venesio, T., Casey, G., Crichton, D., Varley, J., Mitchell, E., Heighway, J. & Santibanez-Koref, M. (1995) Detailed mapping and loss of heterozygosity analysis suggests a suppressor locus involved in sporadic breast cancer within a distal region of chromosome band 17p13.3, Hum. Mol. Genet. 4, 2047-2055.
41. Reiner, O., Carrozzo, R., Shen, Y., Wehnert, M., Faustinella, F., Dobyns, W. B., Caskey, C. T. & Ledbetter, D. H. (1993) Isolation of a Miller-Dicker lissencephaly gene containing G protein beta-subunit-like repeats, Nature 19,364, 717-721.
42. Chance, P. F. & Fischbeck, K. H. (1994) Molecular genetics of Charcot-Marie-Tooth disease and related neuropathies, Hum. Mol. Genet. 3, 1503-1507.
43. Selter, H. & Montenarh, M. (1994) The emerging picture of p53, Int. J. Biochem. 26, 145-154.
44. Weeda, G., van Ham, R. C., Vermeulen, W., Bootsma, D., van der Eb, A. J. & Hoeijmakers, J. H. (1990) A presumed DNA helicase encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne's syndrome, Cell 62, 777-791.
45. Fort, P., Marty, L., Piechaczyk, M., el Sabrouty, S., Dani, C., Jeanteur, P. & Blanchard, J. M. (1985) Various rat adult tissues express only one major mRNA species from the glyceraldehyde-3-phosphate-dehydrogenase multigenic family, Nucleic Acids Res. 13, 1431-1442.
46. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) Basic local alignment search tool, J. Mol. Biol. 215, 403-410.
47. Pearson, W. R. & Lipman, D. J. (1988) Improved tools for biological sequence comparison, Proc. Natl Acad. Sci. USA 85, 2444-2448.
48. Woodage, T., Basrai, M. A., Baxevanis, A. D., Hieter, P. & Collins, F. S. (1997) Characterization of the CHD family of proteins, Proc. Natl Acad. Sci. USA 84, 11472-11477.