A fluorescence spectroscopic study on the binding of mRNA 5'-cap-analogs to human translation initiation factor eIF4E: A critical evaluation of the sources of error

Journal of Photochemistry and Photobiology B: Biology

Volumn 43, Issue 2, 1998, Pages 158-163

  Wieczorek, Zbigniew ^a   Darzynkiewicz, Edward ^b   Lönnberg, Harri ^c  

^a UNIV OF AGRICULTURE AND TECHNOLOGY   (Poland)

^b UNIVERSITY OF WARSAW   (Poland)

^c UNIVERSITY OF TURKU   (Finland)

Author keywords

Error sources; Fluorescence spectroscopy; Human translation initiation factor; mRNA 5' cap analogs

Indexed keywords

INITIATION FACTOR 4E; MESSENGER RNA;

ARTICLE; FLUORESCENCE SPECTROSCOPY; HUMAN; HUMAN CELL; PRIORITY JOURNAL; TRANSLATION INITIATION;

BINDING SITES; ERYTHROCYTES; ESCHERICHIA COLI; EUKARYOTIC INITIATION FACTOR-4E; HUMANS; KINETICS; METHYLATION; PEPTIDE INITIATION FACTORS; RECOMBINANT PROTEINS; REPRODUCIBILITY OF RESULTS; RNA CAPS; RNA, MESSENGER; SPECTROMETRY, FLUORESCENCE; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 0032524675     PISSN: 10111344     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1011-1344(98)00100-6     Document Type: Article

References (30)

1. [1] A.J. Shatkin, mRNA cap binding proteins: essential factors for initiating translation, Cell 40 (1985) 223-224.
2. [2] R.E. Rhoads, The cap structure of eukaryotic messenger RNA and its interaction with cap-binding protein, in: H.F. Hahn, D.J. Kopecho, W.E. Muller (Eds.), Progress in Molecular and Subcellular Biology, vol. 9, Springer, Berlin, 1985, pp. 104-155.
3. [3] N. Sonenberg, Cap binding proteins of eukaryotic messenger RNA: functions in initiation and control of translation, Progr. Nucleic Acids Res. Mol. Biol. 35 (1988) 173-207.
4. [4] N. Sonenberg, ATP/magnesium (2+)-dependent cross-linking of cap binding proteins to the 5′-end of eukaryotic mRNA, Nucleic Acids Res. 9 (1981) 1643-1656.
5. [5] N. Sonenberg, D. Guertin, D. Cleveland, H. Trachsel, Probing the function of the eukaryotic 5′ cap structure by using a monoclonal antibody directed against cap-binding proteins, Cell 27 (1981) 563-572.
6. 7G-cap binding protein with different effects on capped mRNA translation in extracts of uninfected and poliovirus infected HeLa cells, J. Biol. Chem. 256 (1981) 7691-7694.
7. [7] G.M. Hellmann, L.-Y. Chu, R.E. Rhoads, A polypeptide which reverses cap analogue inhibition of cell-free protein synthesis: purification and binding to capped oligonucleotides, J. Biol. Chem. 257 (1982) 4056-4062.
8. [8] J. A. Grifo, S.M. Tahara, M.A. Morgan, A.J. Shatkin, W.C. Merrick, New initiation factor activity required for globin mRNA translation, J. Biol. Chem. 258 (1983) 5804-5810.
9. [9] N.R. Webb, R.V.J. Chari, G. DePillis, J.W. Kozarich, R.E. Rhoads, Purification of the messenger RNA cap-binding protein using a new affinity medium. Biochemistry 23 (1984) 177-181.
10. [10] R. Duncan, S.C. Milburn, J.W.B. Hershey, Regulated phosphorylation and low abundance of HeLa cell initiation factor eIF4E suggest a role in translational control: heat shock effect on eIF4E, J. Biol, Chem. 262 (1987) 380-388.
11. [11] W.D. McCubbin, I. Edery, M. Altmann, N. Sonenberg, C.M. Kay, Circular dichroism and fluorescence studies on protein synthesis initiation factor eIF4E and two mutant forms from the yeast Saccharomyces cerevisiae, J. Biol. Chem. 263 (1988) 17663-17671.
12. 7GpppG to human protein synthesis initiation factor 4E. Biochemistry 28 (1989) 8078-8083.
13. [13] S.E. Carberry, E. Darzynkiewicz, J. Stepiński, M.S. Tahara, R.E. Rhoads, D.J. Goss, A spectroscopic study of the binding of N-7-substituted cap analogues to human protein synthesis initiation factor 4E, Biochemistry 29 (1990) 3337-3341.
14. 7GpppG and rabbit globin mRNA to protein synthesis initiation factors 4A, 4E, and 4F, Biochemistry 29 (1990) 5008-5012.
15. [15] D.J. Goss, S.E. Carberry, T.E. Dever, W.C. Merrick, R.E. Rhoads, A fluorescence study of the interaction of protein synthesis initiation factors 4A, 4E, and 4F with mRNA and oligonucleotide analogs, Biochim. Biophys. Acta 1050 (1990) 163-166.
16. 7G base recognition site of human cap binding protein (IF4E) by site-directed mutagenesis, FEBS 280 (1991) 207-210.
17. [17] H. Ueda, H. Maruyama, M. Doi, M. Inoue, T. Ishida, H. Morioka, T. Tanaka, S. Nishikawa, S. Uesugi, Expression of a synthetic gene for human cap binding protein (Human IF4E) in Escherichia coli and fluorescence studies on interaction with mRNA cap structure analogues, J. Biochem. 109 (1991) 882-889.
18. [18] S.E. Carberry, E. Darzynkiewicz, D.J. Goss, A comparison of the binding of methylated cap analogues to wheat germ protein synthesis initiation factors 4F and (iso)4F, Biochemistry 30 (1991) 1624-1627.
19. [19] S.E. Carberry, D.J. Goss, Interaction of wheat germ protein synthesis initiation factors eIF3, eIF(iso)4F, and eIF4F with mRNA analogues, Biochemistry 39 (1991) 6977-6982.
20. [20] S.E. Carberry, D.E. Friedland, R.E. Rhoads, D.J. Goss, Binding of protein synthesis initiation factor 4E to oligoribonucleotides. Effects of cap accessibility and secondary structure, Biochemistry 31 (1992) 1427-1432.
21. [21] W.B. Minich, M.L. Balasta, D.J. Goss, R.E, Rhoads, Chromatographic resolution of in vivo phosphorylated and non-phosphorylated eukaryotic translation initiation factor eIF-4E: increased cap affinity of the phosphorylated form, Proc. Natl. Acad. Sci. USA 91 (1994) 7668-7672.
22. [22] S. Morino, M. Yasui, M. Doi, M. Inoue, T. Ishida, H. Ueda, S. Uesugi, Direct expression of a synthetic gene in Escherichia coli: purification and physicochemical properties of human initiation factor 4E, J. Biochem. 116 (1994) 687-693.
23. [23] J. Marcotrigiano, A.-C. Gingras, N. Sonenberg, S.K. Burley, Cocrystal structure of the messenger RNA 5′ cap-binding protein (eIF4E) bound to 7-methyl-GDP, Cell 89 (1997) 951-961.
24. 7GDP and interaction with 4E-binding protein, Nature Struct. Biol. 4 (1997) 717-724.
25. [25] D.B. Stern, H. Wilson, R. Jagus, Use of nonreducing SDS-PAGE for monitoring renaturation of recombinant protein synthesis initiation factor, eIF-4α, Prot. Exper. Pur. 4 (1993) 320-327.
26. [26] E. Darzynkiewicz, I. Ekiel, S.M. Tahara, L.S. Seliger, A.J. Shatkin, Chemical synthesis and characterization of 7-methylguanosine cap analogs, Biochemistry 24 (1985) 1701-1707.
27. 3-dinucleoside triphosphates related to mRNA 5′-cap, and comparative kinetic studies on their nucleoside and nucleoside monophosphate analogs, Nucleosides Nucleotides 9 (1990) 599-618.
28. 2,2,7GTP-sepharose 4B: new affinity resins for isolation of cap binding proteins, Collect. Czech. Chem. Commun. 58 (special issue) (1993) 132-135.
29. 2,7-trimethyl-guanosines, J. Photochem. Photobiol. B: Biology 28 (1995) 57-63.
30. [30] Z. Wieczorek, J. Stepiński, E. Darzynkiewicz, H. Lönnberg, Association of nucleosides and their 57prime;-monophosphates with a tryptophan containing tripeptide, Trp-Leu-Glu: the source of an overestimation by fluorescence spectroscopy, Biophys. Chem. 47 (1993) 233-240.