Affinity selection from peptide libraries to determine substrate specificity of protein tyrosine phosphatases

Analytical Biochemistry

Volumn 258, Issue 1, 1998, Pages 19-30

  Huyer, Gregory ^a,b   Kelly, John ^a   Moffat, Jason ^a   Zamboni, Robert ^a   Jia, Zongchao ^c   Gresser, Michael J ^a,b   Ramachandran, Chidambaram ^a  

^a MERCK FROSST CENTRE FOR THERAPEUTIC RESEARCH   (Canada)

^b Gina Cody School of Engineering and Computer Science   (Canada)

^c QUEEN S UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; LIBRARIES; MASS SPECTROMETRY; PHOSPHATASES;

AROMATIC AMINO ACID; COMBINATORIAL LIBRARY; IMMOBILIZED PROTEINS; MASS SPECTROMETRIC DETECTION; PROTEIN-TYROSINE PHOSPHATASE; SEQUENCE SPECIFICITY; SRC HOMOLOGY 2 DOMAINS; SUBSTRATE SPECIFICITY;

PEPTIDES;

PEPTIDE LIBRARY; PROTEIN TYROSINE PHOSPHATASE;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; BINDING AFFINITY; BINDING SITE; ENZYME ANALYSIS; ENZYME BINDING; ENZYME KINETICS; ENZYME SPECIFICITY; MASS SPECTROMETRY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

EID: 0032503030     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1006/abio.1997.2541     Document Type: Article

References (36)

1. Sun H., Tonks N. K. Trends Biochem. Sci. 19:1994;480-485.
2. Tonks N. K. Adv. Pharmacol. 36:1996;91-119.
3. Hunter T. Cell. 80:1995;225-236.
4. Tonks N. K., Neel B. G. Cell. 87:1996;365-368.
5. Zhang Z.-Y., Thieme-Sefler A. M., Maclean D., McNamara D. J., Dobrusin E. M., Sawyer T. K., Dixon J. E. Proc. Natl. Acad. Sci. USA. 90:1993;4446-4450.
6. Zhang Z.-Y., Maclean D., McNamara D. J., Sawyer T. K., Dixon J. E. Biochemistry. 33:1994;2285-2290.
7. Cho H., Krishnaraj R., Itoh M., Kitas E., Bannwarth W., Saito H., Walsh C. T. Protein Sci. 2:1993;977-984.
8. Hippen K. L., Jakes S., Richards J., Jena B. P., Beck B. L., Tabatabai L. B., Ingebritsen T. S. Biochemistry. 32:1993;12405-12412.
9. Dechert U., Adam M., Harder K. W., Clark-Lewis I., Jirik F. J. Biol. Chem. 269:1994;5602-5611.
10. Dechert U., Affolter M., Harder K. W., Matthews J., Owen P., Clark-Lewis I., Thomas M. L., Aebersold R., Jirik F. R. Eur. J. Biochem. 231:1995;673-681.
11. Bobko M., Wolfe H. R., Saha A., Dolle R. E., Fisher D. K., Higgins T. J. Bioorg. Med. Chem. Lett. 5:1995;353-356.
12. Kwon M., Oh M., Han J., Cho H. Biochem. Mol. Biol. 29:1996;386-392.
13. Songyang Z., Shoelson S. E., Chaudhuri M., Gish G., Pawson T., Haser W. G., King F., Roberts T., Ratnofsky S., Lechleider R. J., Neel B. G., Birge R. B., Fajardo J. E., Chou M. M., Hanafusa H., Schaffhausen B., Cantley L. C. Cell. 72:1993;767-778.
14. Songyang Z., Fanning A. S., Fu C., Xu J., Marfatia S. M., Chishti A. H., Crompton A., Chan A. C., Anderson J. M., Cantley L. C. Science. 275:1997;73-77.
15. Songyang Z., Blechner S., Hoagland N., Hoekstra M. F., Piwnica-Worms H., Cantley L. C. Curr. Biol. 4:1994;973-982.
16. Songyang Z., Carraway K. L., Eck M. J., Harrison S. C., Feldman R. A., Mohammad M., Schlessinger J., Hubbard S. R., Smith D. P., Eng C., Lorenzo M. J., Ponder B. A. J., Mayer B. J., Cantley L. C. Nature. 373:1995;536-539.
17. Kelly M. A., Liang H., Sytwu I.-I., Vlattas I., Lyons N. L., Bowen B. R., Wennogle L. P. Biochemistry. 35:1996;11747-11755.
18. Burke T. R. Jr., Kole H. K., Roller P. P. Biochem. Biophys. Res. Commun. 204:1994;129-134.
19. Solas D., Hale R. L., Patel D. V. J. Org. Chem. 61:1996;1537-1539.
20. Huyer G., Liu S., Kelly J., Moffat J., Payette P., Kennedy B., Tsaprailis G., Gresser M. J., Ramachandran C. J. Biol. Chem. 272:1997;843-851.
21. Zhang Z.-Y., Maclean D., Thieme-Sefler A. M., Roeske R. W., Dixon J. E. Anal. Biochem. 211:1993;7-15.
22. Chen L., Wu L., Otaka A., Smyth M. S., Roller P. P., Burke T. R. Jr., den Hertog J., Zhang Z.-Y. Biochem. Biophys. Res. Commun. 216:1995;976-984.
23. Jia Z., Barford D., Flint A. J., Tonks N. K. Science. 268:1995;1754-1758.
24. Songyang Z., Shoelson S. E., McGlade J., Olivier P., Pawson T., Bustelo X. R., Barbacid M., Sabe H., Hanafusa H., Yi T., Ren R., Baltimore D., Ratnofsky S., Feldman R. A., Cantley L. C. Mol. Cell. Biol. 14:1994;2777-2785.
25. Williams K. P., Evans D. M., Rosenberg S., Jindal S. Techniques in Protein Chemistry. 1996;Academic Press, San Diego. p. 57-64.
26. Garton A. J., Flint A. J., Tonks N. K. Mol. Cell. Biol. 16:1996;6408-6418.
27. Sun H., Charles C. H., Lau L. F., Tonks N. K. Cell. 75:1993;487-493.
28. Tenev T., Keilhack H., Tomic S., Stoyanov B., Stein-Gerlach M., Lammers R., Krivtsov A. V., Ullrich A., Böhmer F.-D. J. Biol. Chem. 272:1997;5966-5973.
29. Fawell S., Seery J., Daikh Y., Moore C., Chen L. L., Pepinsky B., Barsoum J. Proc. Natl. Acad. Sci. USA. 91:1994;664-668.
30. Kole H. K., Garant M. J., Bernier M. J. Biol. Chem. 271:1996;14302-14307.
31. Giorgetti-Peraldi S., Ottinger E., Wolf G., Ye B., Burke T. R. Jr., Shoelson S. E. Mol. Cell. Biol. 17:1997;1180-1188.
32. Birchall A. M., Bishop J., Bradshaw D., Cline A., Coffey J., Elliott L. H., Gibson V. M., Greenham A., Hallam T. J., Harris W., Hill C. H., Hutchings A., Lamont A. G., Lawton G., Lewis E. J., Maw A., Nixon J. S., Pole D., Wadsworth J., Wilkinson S. E. J. Pharmacol. Exp. Ther. 268:1994;922-929.
33. Lee J. C., Laydon J. T., McDonnell P. C., Gallagher T. F., Kumar S., Green D., McNulty D., Blumenthal M. J., Heys J. R., Landvatter S. W., Strickler J. E., McLaughlin M. M., Siemens I. R., Fisher S. M., Livi G. P., White J. R., Adams J. L., Young P. R. Nature. 372:1994;739-746.
34. Alessi D. R., Cuenda A., Cohen P., Dudley D. T., Saltiel A. R. J. Biol. Chem. 270:1995;27489-27494.
35. Meydan N., Grunberger T., Dadi H., Shahar M., Arpaia E., Lapidot Z., Leeder J. S., Freedman M., Cohen A., Gazit A., Levitzki A., Roifman C. M. Nature. 379:1996;645-648.
36. Nicholls A., Sharp K. A., Honig B. Proteins Struct. Funct. Genet. 11:1991;281-296.