-
1
-
-
44949289693
-
Crystallization of DNA binding proteins with oligodeoxynucleotides
-
Aggarwal A.K. Crystallization of DNA binding proteins with oligodeoxynucleotides. Methods: A Companion to Methods Enzymol. 1:1990;83-90
-
(1990)
Methods: A Companion to Methods Enzymol.
, vol.1
, pp. 83-90
-
-
Aggarwal, A.K.1
-
2
-
-
0029097035
-
Accuracy of the EcoRV restriction endonuclease: Binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences
-
Alves J., Selent U., Wolfes H. Accuracy of the EcoRV restriction endonuclease binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences. Biochemistry. 34:1995;11191-11197
-
(1995)
Biochemistry
, vol.34
, pp. 11191-11197
-
-
Alves, J.1
Selent, U.2
Wolfes, H.3
-
4
-
-
0026597444
-
The Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger A.T. The Free R value A novel statistical quantity for assessing the accuracy of crystal structures. Nature. 355:1992;472-474
-
(1992)
Nature
, vol.355
, pp. 472-474
-
-
Brünger, A.T.1
-
5
-
-
0023140814
-
Crystallographic R-factor refinement by molecular dynamics
-
Brünger A.T., Kuriyan J., Karplus M. Crystallographic R-factor refinement by molecular dynamics. Science. 235:1987;458-460
-
(1987)
Science
, vol.235
, pp. 458-460
-
-
Brünger, A.T.1
Kuriyan, J.2
Karplus, M.3
-
7
-
-
0028933039
-
Optical melting of 128 octamer DNA duplexes
-
Doktycz M.J., Morris M.D., Dormady S.J., Beattie K.L., Jacobson K.B. Optical melting of 128 octamer DNA duplexes. J. Biol. Chem. 270:1995;8439-8445
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 8439-8445
-
-
Doktycz, M.J.1
Morris, M.D.2
Dormady, S.J.3
Beattie, K.L.4
Jacobson, K.B.5
-
8
-
-
0031591392
-
Specific binding by EcoRV endonuclease to its DNA recognition site GATATC
-
Engler L.E., Welch K.K., Jen-Jacobson L. Specific binding by EcoRV endonuclease to its DNA recognition site GATATC. J. Mol. Biol. 269:1997;82-101
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 82-101
-
-
Engler, L.E.1
Welch, K.K.2
Jen-Jacobson, L.3
-
9
-
-
0028631162
-
DNA bending by Cro protein in specific and non-specific complexes: Implications for protein site recognition and specificity
-
Erie D.A., Yang G., Schultz H., Bustamante C. DNA bending by Cro protein in specific and non-specific complexes implications for protein site recognition and specificity. Science. 266:1994;1562-1566
-
(1994)
Science
, vol.266
, pp. 1562-1566
-
-
Erie, D.A.1
Yang, G.2
Schultz, H.3
Bustamante, C.4
-
10
-
-
0000773646
-
Mastering the LORE of protein structure
-
Finzel B.C. Mastering the LORE of protein structure. Acta Crystallog. sect. D. 51:1995;450-457
-
(1995)
Acta Crystallog. Sect. D
, vol.51
, pp. 450-457
-
-
Finzel, B.C.1
-
11
-
-
0029010368
-
The basis for half-site specificity explored through a non-cognate steroid receptor-DNA complex
-
Gewirth D.G., Sigler P.B. The basis for half-site specificity explored through a non-cognate steroid receptor-DNA complex. Nature Struct. Biol. 2:1995;386-394
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 386-394
-
-
Gewirth, D.G.1
Sigler, P.B.2
-
12
-
-
0029790522
-
Linear diffusion of the restriction endonuclease EcoRV on DNA is essential for the in vivo function of the enzyme
-
Jeltsch A., Wenz C., Stahl F., Pingoud A. Linear diffusion of the restriction endonuclease EcoRV on DNA is essential for the in vivo function of the enzyme. EMBO J. 15:1996;5104-5111
-
(1996)
EMBO J.
, vol.15
, pp. 5104-5111
-
-
Jeltsch, A.1
Wenz, C.2
Stahl, F.3
Pingoud, A.4
-
13
-
-
0029120464
-
Structural-perturbation approaches to thermodynamics of site-specific protein-DNA interactions
-
Jen-Jacobson L. Structural-perturbation approaches to thermodynamics of site-specific protein-DNA interactions. Methods Enzymol. 259:1995;305-344
-
(1995)
Methods Enzymol.
, vol.259
, pp. 305-344
-
-
Jen-Jacobson, L.1
-
14
-
-
84889120137
-
Improved methods for the building of protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for the building of protein models in electron density maps and the location of errors in these models. Acta Crystallog. Sect. A. 47:1991;110-119
-
(1991)
Acta Crystallog. Sect. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
15
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Kim Y., Geiger J.H., Hahn S., Sigler P.B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
16
-
-
0028988416
-
2+ binding to the active site of EcoRV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 Å resolution
-
2+ binding to the active site of EcoRV endonuclease a crystallographic study of complexes with substrate and product DNA at 2 Å resolution. Biochemistry. 34:1995;683-696
-
(1995)
Biochemistry
, vol.34
, pp. 683-696
-
-
Kostrewa, D.1
Winkler, F.K.2
-
17
-
-
0024539180
-
Defining the structure of irregular nucleic acids: Conventions and principles
-
Lavery R., Sklenar H. Defining the structure of irregular nucleic acids conventions and principles. J. Biomol. Struct. Dynam. 6:1989;655-667
-
(1989)
J. Biomol. Struct. Dynam.
, vol.6
, pp. 655-667
-
-
Lavery, R.1
Sklenar, H.2
-
18
-
-
0029131298
-
Structural basis for DNA bending by the architectural transcription factor LEF-1
-
Love J.J., Li X., Case D.A., Giese K., Grosschedl R., Wright P.E. Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature. 376:1995;791-795
-
(1995)
Nature
, vol.376
, pp. 791-795
-
-
Love, J.J.1
Li, X.2
Case, D.A.3
Giese, K.4
Grosschedl, R.5
Wright, P.E.6
-
20
-
-
0001938905
-
New parameters for the refinement of nucleic acid-containing structures
-
Parkinson G., Vojtechovsky J., Clowney L., Brünger A.T., Berman H.M. New parameters for the refinement of nucleic acid-containing structures. Acta Crystallog. sect. D. 52:1996;57-64
-
(1996)
Acta Crystallog. Sect. D
, vol.52
, pp. 57-64
-
-
Parkinson, G.1
Vojtechovsky, J.2
Clowney, L.3
Brünger, A.T.4
Berman, H.M.5
-
21
-
-
0030593510
-
Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA interface
-
Parkinson G., Wilson C., Gunasekera A., Ebright Y.W., Ebright R.E., Berman H.M. Structure of the CAP-DNA complex at 2.5 Å resolution A complete picture of the protein-DNA interface. J. Mol. Biol. 260:1996;395-408
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 395-408
-
-
Parkinson, G.1
Wilson, C.2
Gunasekera, A.3
Ebright, Y.W.4
Ebright, R.E.5
Berman, H.M.6
-
22
-
-
0000445736
-
The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer
-
Passner J.M., Steitz T.A. The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. Proc. Natl Acad. Sci. USA. 94:1997;2843-2847
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 2843-2847
-
-
Passner, J.M.1
Steitz, T.A.2
-
23
-
-
0031576347
-
Conformational transitions and structural deformability of EcoRV restriction endonuclease revealed by crystallographic analysis
-
Perona J.J., Martin A.M. Conformational transitions and structural deformability of EcoRV restriction endonuclease revealed by crystallographic analysis. J. Mol. Biol. 273:1997;207-225
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 207-225
-
-
Perona, J.J.1
Martin, A.M.2
-
24
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
-
Rice P.A., Yang S., Mizuuchi K., Nash H.A. Crystal structure of an IHF-DNA complex a protein-induced DNA U-turn. Cell. 87:1996;1295-1306
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.2
Mizuuchi, K.3
Nash, H.A.4
-
25
-
-
0002598414
-
Type II restriction endonucleases
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Roberts R.J., Halford S.E. Type II restriction endonucleases. Nucleases. 2nd edit.:1993;35-88 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1993)
Nucleases 2nd Edit.
, pp. 35-88
-
-
Roberts, R.J.1
Halford, S.E.2
-
26
-
-
0000082544
-
CHAIN: A crystallographic modelling program
-
Sack J.S. CHAIN a crystallographic modelling program. J. Mol. Graph. 6:1988;224-225
-
(1988)
J. Mol. Graph.
, vol.6
, pp. 224-225
-
-
Sack, J.S.1
-
27
-
-
0029087027
-
Nonspecific DNA bending and the specificity of protein-DNA interactions
-
Schepartz A. Nonspecific DNA bending and the specificity of protein-DNA interactions. Science. 269:1995;989
-
(1995)
Science
, vol.269
, pp. 989
-
-
Schepartz, A.1
-
28
-
-
0021152929
-
The cleavage site for the restriction enzyme EcoRV is 5′-GAT/ATC-3′
-
Schildkraut I., Banner C.D.B., Rhodes C.S., Parekh S. The cleavage site for the restriction enzyme EcoRV is 5′-GAT/ATC-3′ Gene. 27:1984;327-329
-
(1984)
Gene
, vol.27
, pp. 327-329
-
-
Schildkraut, I.1
Banner, C.D.B.2
Rhodes, C.S.3
Parekh, S.4
-
29
-
-
0025293108
-
Crystallization of Escherichia coli catabolite gene activator protein with its DNA binding site
-
Schultz S.C., Shields G.C., Steitz T.A. Crystallization of Escherichia coli catabolite gene activator protein with its DNA binding site. J. Mol. Biol. 213:1990;159-166
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 159-166
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
30
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90°
-
Schultz S.C., Shields G.C., Steitz T.A. Crystal structure of a CAP-DNA complex the DNA is bent by 90° Science. 253:1991;1001-1007
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
31
-
-
0026696177
-
A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRV
-
Selent U., Ruter T., Kohler E., Liedtke M., Thielking V., Alves J., Oelgeschager T., Wolfes H., Peters F., Pingoud A. A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRV. Biochemistry. 31:1992;4808-4815
-
(1992)
Biochemistry
, vol.31
, pp. 4808-4815
-
-
Selent, U.1
Ruter, T.2
Kohler, E.3
Liedtke, M.4
Thielking, V.5
Alves, J.6
Oelgeschager, T.7
Wolfes, H.8
Peters, F.9
Pingoud, A.10
-
32
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar R.S., Record M.T. Jr. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:1994;777-784
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
33
-
-
0025280401
-
Structural studies of protein-nucleic acid interaction: The sources of sequence-specific binding
-
Steitz T.A. Structural studies of protein-nucleic acid interaction the sources of sequence-specific binding. Quart. Rev. Biophys. 23:1990;205-280
-
(1990)
Quart. Rev. Biophys
, vol.23
, pp. 205-280
-
-
Steitz, T.A.1
-
35
-
-
0027159254
-
The crystal structure of the EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments
-
Winkler F.K., Banner D.W., Oefner C., Tsernoglou D., Brown R.S., Heathman S.P., Bryan R.K., Martin P.D., Petratos K., Wilson K.S. The crystal structure of the EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J. 12:1993;1781-1795
-
(1993)
EMBO J
, vol.12
, pp. 1781-1795
-
-
Winkler, F.K.1
Banner, D.W.2
Oefner, C.3
Tsernoglou, D.4
Brown, R.S.5
Heathman, S.P.6
Bryan, R.K.7
Martin, P.D.8
Petratos, K.9
Wilson, K.S.10
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