Drug binding to DNA: Observation of the drug-DNA hydrogen-bond-stretching modes of netropsin bound to DNA via raman spectroscopy

Physical Review Letters

Volumn 80, Issue 10, 1998, Pages 2241-2244

  Lee, S A ^a   Rupprecht, A ^b   Chen, Y Z ^a,c  

^a UNIVERSITY OF TOLEDO   (United States)

^b STOCKHOLM UNIVERSITY   (Sweden)

^c NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

BOND STRENGTH (CHEMICAL); CALCULATIONS; CHEMICAL REACTIONS; DNA; DRUG PRODUCTS; MOLECULAR VIBRATIONS; NUMERICAL METHODS; RAMAN SCATTERING; RAMAN SPECTROSCOPY;

BIOMOLECULE; BIOMOLECULE LIGAND BINDING DYNAMICS; FORCE CONSTANT; LIGAND; NETROPSIN; NORMAL MODE CALCULATION;

HYDROGEN BONDS;

EID: 0032498762     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.80.2241     Document Type: Article

References (34)

1. W. Saenger, Principles of Nucleic Acid Structure (Springer-Verlag, New York, 1984).
2. R. R. Sinden, DNA Structure and Function (Academic Press, San Diego, CA, 1994).
3. Methods of Enzymology Vol. 211: DNA Structures Part A: Synthesis and Physical Analysis of DNA
4. D. M. J. Lilley and J. E. Dahlberg (Academic Press, San Diego, CA, 1992).
5. S. A. Lee, B. Sclavi, J. W. Powell, W. Williamson III, and A. Rupprecht, Phys. Rev. E 48, 2240 (1993).
6. Y. Z. Chen and E. W. Prohofsky, Biopolymers 35, 657 (1995).
7. Y. Z. Chen, A. Szabó, D. F. Schroeter, J. W. Powell, S. A. Lee, and E. W. Prohofsky, Phys. Rev. E 55, 7414 (1997).
8. H. Urabe and Y. Tominaga, J. Phys. Soc. Jpn. 50, 3534 (1981).
9. H. Urabe and Y. Tominaga, Biopolymers 21, 2477 (1982).
10. S. M. Lindsay, S. A. Lee, J. W. Powell, T. Weidlich, C. Demarco, G. D. Lewen, N. J. Tao, and A. Rupprecht, Biopolymers 27, 1015 (1988).
11. T. Weidlich, S. M. Lindsay, Q. Rui, A. Ruppecht, W. L. Peticolas, and G. A. Thomas, J. Biomol. Struct. Dyn. 8, 139 (1990).
12. C. Zimmer, G. Luck, H. Thrum, and C. Pitra, Eur. J. Biochem. 26, 81 (1972).
13. D. J. Patel, Proc. Natl. Acad. Sci. U.S.A. 79, 6424 (1982).
14. G. Gupta, M. H. Sarma, and R. H. Sarma, J. Biomol. Struct. Dyn. 1, 1457 (1984).
15. M. L. Kopka, C. Yoon, D. Goodsell, P. Pjura, and R. E. Dickerson, J. Mol. Biol. 183, 553 (1985).
16. J. Caldwell and P. Kollman, Biopolymers 25, 249 (1986).
17. L. A. Marky and K. J. Breslauer, Proc. Natl. Acad. Sci. U.S.A. 84, 4359 (1987).
18. J. Liquier, A. Mchami, and E. Taillandier, J. Biomol. Struct. Dyn. 7, 119 (1989).
19. M. Coll, J. Aymami, G. A. van der Marel, J. H. van Boom, A. Rich, and A. H.-J. Wang, Biochemistry 28, 310 (1989).
20. H. Fritzsche and A. Rupprecht, J. Biomol. Struct. Dyn. 7, 1135 (1990).
21. H. Fritzsche, R. Brandes, A. Rupprecht, Z. Song, T. Weidlich, and D. R. Kearns, Nucleic Acids Res. 20, 1223 (1992).
22. L. Tabernero, N. Verdaguer, M. Coll, I. Fita, G. A. van der Marel, J. H. van Boom, A. Rich, and J. Aymami, Biochemistry 32, 8403 (1993).
23. M. B. Hakim, S. M. Lindsay, and J. W. Powell, Biopolymers 23, 1185 (1984).
24. A. Rupprecht, Biotechnol. Bioeng. 12, 93 (1970)
25. A. Rupprecht and B. Forslind, Biochim Biophys. Acta 204, 304 (1970).
26. Handbook of Chemistry and Physics, R. C. Weast (The Chemical Rubber Co., Cleveland, OH, 1969), Vol. 50.
27. S. C. Erfurth, E. J. Kiser, and W. L. Peticolas, Proc. Natl. Acad. Sci. U.S.A. 69, 938 (1972).
28. R. Chandrasekaran and S. Arnott, in Landolt-Bornstein Numerical Data and Functional Relationships in Science and Technology, W. Saenger (Springer-Verlag, Berlin, 1989), pp. 31–170.
29. M. Coll, J. Aymami, G. A. van der Marel, J. H. van Boom, A. Rich, and A. H.-J. Wang, Biochemistry 28, 310 (1989).
30. W. Zhuang, Y. Z. Chen, and E. W. Prohofsky, J. Biomol. Struct. Dyn. 10, 403 (1992).
31. M. Tsuboi, S. Takahashi, S. Muraishi, T. Kaijiura, and S. Nishimura, Science 174, 1142 (1971).
32. W. L. Peticolas, W. L. Kubasek, G. A. Thomas, and M. Tsuboi, in Biological Applications of Raman Spectroscopy, Volume 1: Raman Spectra and the Conformations of Biological Macromolecules, T. G. Spiro (John Wiley & Sons, New York, 1987).
33. S. A. Lee (to be published).
34. E. W. Prohofsky, in Statistical Mechanics and Stability of Macromolecules (Cambridge University Press, New York, 1995).