Organization and structure of NADH-dependent glutamate synthase gene from rice plants

Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology

Volumn 1387, Issue 1-2, 1998, Pages 298-308

  Goto, Satoshi ^a   Akagawa, Takumi ^a   Kojima, Soichi ^a   Hayakawa, Toshihiko ^a   Yamaya, Tomoyuki ^a  

^a TOHOKU UNIVERSITY   (Japan)

Author keywords

cDNA; Gene structure; NADH glutamate synthase; Rice, Oryza sativa

Indexed keywords

COMPLEMENTARY DNA; GLUTAMATE SYNTHASE; METHIONINE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; DNA LIBRARY; EXON; GENE STRUCTURE; GENETIC TRANSCRIPTION; IMMUNOBLOTTING; INTRON; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT CELL; PLANT ROOT; PRIORITY JOURNAL; REPORTER GENE; RICE;

AMINO ACID OXIDOREDUCTASES; AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; CELLS, CULTURED; CLONING, MOLECULAR; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENES, PLANT; GENES, REPORTER; GLUTAMATE SYNTHASE; GLUTAMATE SYNTHASE (NADH); MOLECULAR SEQUENCE DATA; NAD; ORYZA SATIVA; PLANT PROTEINS; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TRANSFECTION;

ORYZA SATIVA;

EID: 0032497421     PISSN: 01674838     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4838(98)00142-3     Document Type: Article

References (40)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Avila C., Marquetz A.J., Pajuelo P., Cannell M.E., Wallsgrove R.M., Forde B.G. Cloning and sequence analysis of a cDNA for barley ferredoxin-dependent glutamate synthase and molecular analysis of photorespiratory mutants deficient in the enzyme. Planta. 189:1993;475-483.
3. Ballas N., Wong L.M., Theologis A. Identification of the auxin-responsive element, AuxRE, in the primary indoleacetic acid-inducible gene, PS-IAA4/5, of pea (Pisum sativum). J. Mol. Biol. 233:1993;580-596.
4. Ellerstrom M., Stalberg K., Ezcurra I., Rask L. Functional dissection of a napin gene promoter: identification of promoter elements required for embryo and endosperm-specific transcription. Plant Mol. Biol. 32:1996;1019-1027.
5. Filetici P., Martegani M.P., Valenzuela L., Gonzalez A., Ballario P. Sequence of the GLT1 gene from Saccharomyces cerevisiae reveals the domain structure of yeast glutamate synthase. Yeast. 12:1996;1359-1366.
6. Fujiwara T., Beachy R.N. Tissue-specific and temporal regulation of a beta-conglycinin gene: roles of the RY repeat and other cis-acting elements. Plant Mol. Biol. 24:1994;261-272.
7. Gilmartin P.M., Sarokin L., Memelink J., Chua N.-H. Molecular light switches for plant genes. Plant Cell. 2:1990;369-378.
8. Gregerson R.G., Miller S.S., Twary S.N., Gantt J.S., Vance C.P. Molecular characterization of NADH-dependent glutamate synthase from alfalfa nodules. Plant Cell. 5:1993;215-226.
9. Hayakawa T., Nakamura T., Hattori F., Mae T., Ojima K., Yamaya T. Cellular localization of NADH-dependent glutamate-synthase protein in vascular bundles of unexpanded leaf blades and young grains of rice plants. Planta. 193:1994;455-460.
10. Hayakawa T., Yamaya T., Mae T., Ojima K. Purification, characterization, and immunological properties of NADH-dependent glutamate synthase from rice cell cultures. Plant Physiol. 98:1992;1317-1322.
11. Hayakawa T., Yamaya T., Mae T., Ojima K. Changes in the content of two glutamate synthase proteins in spikelets of rice (Oryza sativa) plants during ripening. Plant Physiol. 101:1993;1257-1262.
12. Higo K., Ugawa Y., Iwamoto M., Higo H. PLACE: a database of plant cis-acting regulatory DNA elements. Nucleic Acids Res. 26:1998;358-359.
13. Hirose N., Hayakawa T., Yamaya T. Inducible accumulation of mRNA for NADH-dependent glutamate synthase in rice roots in response to ammonium ions. Plant Cell Physiol. 38:1997;1295-1297.
14. Ishiyama K., Hayakawa T., Yamaya T. Expression of NADH-dependent glutamate synthase protein in epidermis and exodermis of rice roots in response to the supply of nitrogen. Planta. 204:1998;288-294.
15. Johnson M.K., Kowal A.T., Morningstar J.E., Oliver M.E., Whittaker K., Gunsalus R.P., Ackrell B.A.C., Cecchini G. Subunit location of the iron-sulfur clusters in fumarate reductase from Escherichia coli. J. Biol. Chem. 263:1988;14732-14738.
16. Lea P.J., Miflin B.J. Alternative route for nitrogen assimilation in higher plants. Nature. 251:1974;614-616.
17. P.J. Lea, S.A. Robinson, G.R. Stewart, The enzymology and metabolism of glutamine, glutamate and asparagine, in: B.J. Miflin, P.J. Lea (Eds.), The Biochemistry of Plants. Vol. 16. Intermediary Nitrogen Metabolism, Academic Press, San Diego, CA, 1990, pp. 121-157.
18. 2 from baker's yeast. Eur. J. Biochem. 152:1985;419-428.
19. Mei B., Zalkin H. A cysteine-histidine-aspartate catalytic triad is involved in glutamine amide transfer function in purF-type glutamine amidotransferase. J. Biol. Chem. 264:1989;16613-16619.
20. Menkens A.E., Schindler U., Cashmore A.R. The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bzip proteins. Trends Biochem. Sci. 20:1995;506-510.
21. Müller M., Knudsen S. The nitrogen response of a barley C-hordein promoter is controlled by positive and negative regulation of the GCN4 and endosperm box. Plant J. 4:1993;343-355.
22. Murray M.G., Thompson W.F. Rapid isolation of high molecular weight plant DNA. Nucleic Acid. Res. 8:1980;4321-4325.
23. Nakai K., Kanehisa M. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics. 14:1992;897-911.
24. Nalbantoglu B., Hirasawa M., Moomaw C., Nguyen H., Knaff D.B., Allen R. Cloning and sequencing of the gene encoding spinach ferredoxin-dependent glutamate synthase. Biochim. Biophys. Acta. 1183:1994;557-561.
25. Oliver G., Gosset G., Sanchez-Pescador R., Lozoya E., Ku L.M., Flores N., Becerril B., Valle F., Bolivar F. Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12. Gene. 60:1987;1-11.
26. Qandt K., Frech K., Karas H., Wingender E., Werner T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:1995;4878-4884.
27. Rastogi R., Bate N.J., Sivasankar S., Rothstein S.J. Footprinting of the spinach nitrite reductase gene promoter reveals the preservation of nitrate regulatory elements between fungi and higher plants. Plant Mol. Biol. 34:1997;465-476.
28. Sakakibara H., Watanabe M., Hase T., Sugiyama T. Molecular cloning and characterization of complementary DNA encoding for ferredoxin-dependent glutamate synthase in maize leaf. J. Biol. Chem. 266:1991;2028-2035.
29. J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning: a Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
30. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
31. Sechley K.A., Yamaya T., Oaks A. Compartmentation of nitrogen assimilation in higher plants. Int. Rev. Cytol. 134:1992;85-163.
32. Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:1993;3507-3517.
33. Stephens P.E., Lewis H.M., Darlison M.G., Guest J.R. Nucleotide sequence of the lipoamide dehydrogenase gene of Escherichia coli K12. Eur. J. Biochem. 135:1983;519-527.
34. Suzuki A., Rothstein S. Structure and regulation of ferredoxin-dependent glutamate synthase from Arabidopsis thaliana. Cloning of cDNA expression in different tissues of wild-type and gltS mutant strains, and light induction. Eur. J. Biochem. 243:1997;708-718.
35. Tso J.Y., Zalkin H., van Cleemput M., Yanofsky C., Smith J.M. Nucleotide sequence of Escherichia coli purF and deduced amino acid sequence of glutamine phosphoribosylpyrophosphate amidotransferase. J. Biol. Chem. 257:1982;3525-3531.
36. 2 fixation. Plant J. 8:1995;345-358.
37. Watanabe S., Sakai T., Goto S., Yaginuma T., Hayakawa T., Yamaya T. Expression of NADH-dependent glutamate synthase in response to the supply of nitrogen in rice cells in suspension culture. Plant Cell Physiol. 37:1996;1034-1037.
38. Yamaya T., Hayakawa T., Tanasawa K., Kamachi K., Mae T., Ojima K. Tissue distribution of glutamate synthase and glutamine synthetase in rice leaves. Occurrence of NADH-dependent glutamate synthase protein and activity in the unexpanded non-green leaf blades. Plant Physiol. 100:1992;1427-1432.
39. Yamaya T., Tanno H., Hirose N., Watanabe S., Hayakawa T. A supply of nitrogen causes increase in the level of NADH-dependent glutamate synthase protein and in the activity of the enzyme in roots of rice seedlings. Plant Cell Physiol. 36:1995;1197-1204.
40. Zehnacker C., Becker T.W., Suzuki A., Carrayol E., Caboche M., Hirel B. Purification and properties of tobacco ferredoxin-dependent glutamate synthase, and isolation of corresponding cDNA clones. Planta. 187:1992;266-274.