Crystallographic study of steps along the reaction pathway of D-amino acid aminotransferase

Biochemistry

Volumn 37, Issue 14, 1998, Pages 4958-4967

  Peisach, Daniel ^a   Chipman, David M ^b   Van Ophem, Peter W ^c   Manning, James M ^c   Ringe, Dagmar ^a  

^a BRANDEIS UNIVERSITY   (United States)

^b BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

^c NORTHEASTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE DERIVATIVE; AMINOTRANSFERASE; ASPARTATE AMINOTRANSFERASE; CARBOXYL GROUP; DEXTRO AMINO ACID; HYDROGEN; PYRIDOXAL 5 PHOSPHATE; PYRIDOXAMINE PHOSPHATE;

ARTICLE; BACILLUS; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; HYDROGEN BOND; NONHUMAN; PRIORITY JOURNAL; STEREOSPECIFICITY;

ALANINE TRANSAMINASE; BACILLUS; BINDING SITES; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; D-ALANINE TRANSAMINASE; DIAZONIUM COMPOUNDS; MOLECULAR STRUCTURE; PYRIDINES; PYRIDOXAL PHOSPHATE; PYRIDOXAMINE; SUBSTRATE SPECIFICITY;

BACILLUS SP.; BACILLUS SP. YM-1;

EID: 0032492728     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi972884d     Document Type: Article

References (27)

1. Soda, K., and Esaki, S. (1985) in Transaminases (Christen, P., and Metzler, D. E., Eds.) pp 463-469, Wiley and Sons, New York.
2. Tunizawa, K., Masu, Y., Asano, S., Tanaka, H., and Soda, K. (1989) J. Biol. Chem. 264, 2445-2449.
3. Sugio, S., Petsko, G. A., Manning, J. M., Soda, K., and Ringe, D. (1995) Biochemistry 34, 9661-9669.
4. Tanizawa, K., Asano, S., Masu, Y., Kuramitsu, S., Kagamiyama, H., Tanaka, H., and Soda, K. (1989) J. Biol. Chem. 264, 2450-2454.
5. Okada, K., Hirotsu, K., Sato, M., Hayashi, H., and Kagamiyama, H. (1997) J. Biochem. (Tokyo) 121, 637-641.
6. Kirsch, J. F., Eichele, G., Ford, G. C., Vincent, M. G., Jansonius, J. N., Gehring, H., and Christen, P. (1984) J. Mol. Biol. 174, 491-525.
7. Malashkevich, V. N., Toney, M. D., and Jansonius, J. N. (1993) Biochemistry 32, 13451-13462.
8. Toney, M. D., and Kirsch, J. F. (1993) Biochemistry 32, 1471-1479.
9. Martinez Del Pozo, A., Merola, M., Ueno, H., Manning, J. M., Tanizawa, K., Nishimura, K., Asano, S., Tanaka, H., Soda, K., Ringe, D., and Petsko, G. A. (1989) Biochemistry 28, 510-516.
10. Yoshimura, T., Nishimura, K., and Ito, J. (1993) J. Am. Chem. Soc. 115, 3897-3900.
11. Yonaha, K., Misono, H., Yamamoto, T., and Soda, K. (1975) J. Biol. Chem. 250, 6983-6989.
12. Izard, T., Fol, B., Pauptit, R. A., and Jansonius, J. N. (1990) J. Mol. Biol 215, 341-344.
13. Malashkevich, V. N., Jager, J., and Ziak, M. (1995) Biochemistry 34, 405-414.
14. Korytnyk, W., and Paul, B. (1970) J. Med. Chem. 13, 187-191.
15. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497.
16. Navaza, J. (1990) Acta Crystallogr. A46, 619-620.
17. Brünger, A. T., Karplus, M., and Petsko, G. A. (1989) Acta Crystallogr. A45, 50-61.
18. Brünger, A. T., Kuriyan, J., and Karplus, M. (1987) Science 235, 458-460.
19. Jones, T. A., Zhou, J.-Y., and Cowan, S. W. (1991) Acta Crystallogr. A47, 110-119.
20. Navaza, J. (1994) Acta Crystallogr. D50, 760-763.
21. Peisach, D., Chipman, D. M., Van Ophem, P. W., Manning, J. M., and Ringe, D. (1998) J. Am. Chem. Soc. 120, 2268-2274.
22. Derewenda, Z. S., Lee, L., and Derewenda, U. (1995) J. Mol. Biol. 252, 248-262.
23. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
24. McPhalen, C. A., Vincent, M. G., and Jansonius, J. N. (1992) J. Mol. Biol. 225, 495-517.
25. Jager, J., Moser, M., Sauder, U., and Jansonius, J. N. (1994) J. Mol. Biol. 239, 285-305.
26. Picot, D., Sandmeier, E., Thaller, C., Vincent, M. G., Christen, P., and Jansonius, J. N. (1991) Eur. J. Biochem. 196, 329-341.
27. Bhatia, M. B., Martinez del Pozo, A., Ringe, D., Yoshimura, T., Soda, K., and Manning, J. M. (1993) J. Biol. Chem. 268, 17687-17694.