A dynamic model of the Escherichia coli phosphate-starvation response

Journal of Theoretical Biology

Volumn 190, Issue 1, 1998, Pages 37-49

  Van Dien, Stephen J ^a   Keasling, J D ^a  

^a University of California   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE PHOSPHATASE; PHOSPHATE;

ARTICLE; BACTERIAL GENE; CELL SURFACE; DISSOCIATION CONSTANT; DYNAMICS; ESCHERICHIA COLI; GENE INDUCTION; MATHEMATICAL MODEL; PHOSPHATE METABOLISM; PHOSPHATE TRANSPORT; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN PHOSPHORYLATION; REGULON; SIGNAL TRANSDUCTION; STARVATION; TRANSCRIPTION REGULATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0032491829     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1997.0524     Document Type: Article

References (29)

1. BAILEY, J. E. & OLLIS, D. F. (1987). Biochemical Engineering. New York: McGraw-Hill.
2. BLANCH, H. W. & CLARK, D. S. (1996). Biochemical Engineering. New York: Marcel Dekker.
3. DOEDEL, E. J., WANG, X. J. & FAIRGRIEVE, T. F. Center for Research on Parallel Computing, California Institute of Technology. (1995). AUTO94 software for continuation and bifurcation problems in ordinary differential equations. CRPC-95-2.
4. DOIGE, C. A. & AMES, G. F.-L. (1993). ATP-dependent transport systems in bacteria and humans: relevance to cystic fibrosis and multidrug resistance. Annu. Rev. Microbiol. 47, 291-319.
5. FARRELL, R. E. (1993). RNA Methodologies, San Diego, CA: Academic Press.
6. HIGGINS, C. F. (1992). ABC transporters: from microorganisms to man. Annu. Rev. Cell Biol. 8, 67-113.
7. LEE, S. B. & BAILEY, J. E. (1984). Genetically structured models for lac promoter-operator function in the Escherichia coli chromosome and in multicopy plasmids: lac operator function. Biotechnol. Bioeng. 26, 1372-1382.
8. LOHMAN, T. M., WENSLEY, C. G., CINA, J., BURGESS, R. R. & THOMAS RECORD, M. I. (1980). Use of Difference Boundary Sedimentation Velocity to Investigate Nonspecific Protein-Nuclei Acid Interactions . Biochemistry 19, 3516-3522.
9. +-ATPase by protein kinase C. Biochim. Biophys. Acta 1052, 143-151.
10. LUBKE, C., BOIDOL, W. & PETRI, T. (1995). Analysis and optimization of recombinant protein production in Escherichia coli using the inducible phoA promoter of the E. coli alkaline phosphatase. Enzyme Microb. Technol. 17, 923-928.
11. MAKINO, K., AMEMURA, M., KIM, S.-K., SHINAGAWA, H. & NAKATA, A. (1992). Signal transduction of the phosphate regulon in Escherichia coli mediated by phosphorylation. In: Adenine Nucleotides in Cellular Energy Transfer and Signal Transduction (Papa, S., Azzi, A. & Tager, J. M., eds). Basel: Birkhaeuser Verlag.
12. MAKING, K., SHINAGAWA, H., AMEMURA, M., KIMURA, S., NAKATA, A. & ISHIHAMA, A. (1988). Regulation of the phosphate regulon of Escherichia coli: activation of pstS transcription by PhoB protein in vitro. J. Mol. Biol. 203, 85-95.
13. MAKINO, K., SHINAGAWA, H., AMEMURA, M. & NAKATA, A. (1986). Nucleotide sequence of the phoB gene, the positive regulatory gene for the phosphate regulon of Escherichia coli K-12. J. Mol. Biol. 190, 37-44.
14. MCCLEARY, W. R. (1996). The activation of PhoB by acetylphosphate. Mol. Microbiol. 20(6), 1155-1163.
15. MEDVECZKY, N. & ROSENBERG, H. (1971). Phosphate transport in Escherichia coli. Biochim. Biophys. Acta 241, 494-506.
16. NEIDHARDT, F. C., INGRAHAM, J. L. & SCHAECHTER, M. (1990). Physiology of the Bacterial Cell, Sunderland, MA: Sinauer Associates.
17. NEWMAN, E. B., LIN, R. T. & D'ARI, R. (1996). The Leucine/Lrp Regulon. In: Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (Neidhardt, F. C., ed.), pp. 1513-1538. Washington, DC: ASM Press.
18. SHARFSTEIN, S. T., VAN DIEN, S. J. & KEASLING, J. D. (1996). Modulation of the phosphate-starvation response by genetic manipulation of the polyphosphate pathways. Biotechnol. Bioeng. 51, 434-438.
19. SHIN, P. K. & SEO, J.-H. (1990). Analysis of E. coli phoA-lacZ fusion gene expression inserted into a multicopy plasmid and host cell's chromosome. Biotechnol. Bioeng. 36, 1097-1104.
20. VAN VEEN, H. W., ABEE, T., KORTSTEE, G. J. J., KONINGS, W. N. & ZEHNDER, A. J. B. (1994a). Phosphate inorganic transport (Pit) system in Escherichia coli and Acinetobacter johnsonii. In: Phosphate in Microorganisms (Torriani-Gorini, A., Yagil, E. & Silver, S., eds), pp. 43-49. Washington, DC: American Society for Microbiology.
21. VAN VEEN, H. W., ABEE, T., KORTSTEE, G. J. J., KONINGS, W. N. & ZEHNDER, A. J. B. (1994b). Translocation of metal phosphate via the phosphate inorganic transport system of Escherichia coli. Biochemistry 33, 1766-1770.
22. WANNER, B. L. (1990). Phosphorus assimilation and its control of gene expression in Escherichia coli. In: The Molecular Basis of Bacterial Metabolism (Hauska, G. & Thauer, R., eds), pp. 152-163. Heidelberg: Springer-Verlag.
23. WANNER, B. L. (1993). Gene regulation by phosphate in enteric bacteria. J. Cell. Biochem. 51, 47-54.
24. WANNER, B. L. (1995). Signal transduction and cross regulation in the Escherichia coli phosphate regulon by PhoR, CreC, and acetyl phosphate. In: Two-Component Signal Transduction (Hoch, J. A. & Silhavy, T. J., eds). Washington, DC: ASM Press.
25. WANNER, B. L. (1996). Phosphorus assimilation and control of the phosphate regulon. In: Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (Neidhardt, F. C., ed.), pp. 1357-1381. Washington, DC: ASM Press.
26. WILLSKY, G. R., BENNETT, R. L. & MALAMY, M. H. (1973). Inorganic phosphate transport in Escherichia coli: involvement of two genes which play a role in alkaline phosphatase regulation. J. Bacteriol. 113, 529-539.
27. WILLSKY, G. R. & MALAMY, M. H. (1980). Characterization of two genetically separable inorganic phosphate transport systems in Escherichia coli. J. Bacteriol. 144, 356-365.
28. WONG, P., GLADNEY, S. & KEASLING, J. D. (1997). A mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose. Biotechnol. Prog. 13, 132-143.
29. 31P nuclear magnetic resonance of internal Pi during the uptake of sn-glycerol-3-phosphate by the pho regulon-dependent Ugp system and the glp regulon-dependent GlpT system. J. Bacteriol. 177(3), 699-704.