Solution structure of the aminofluorene [AF]-intercalated conformer of the syn-[AF]-C8-dG adduct opposite dC in a DNA duplex

Biochemistry

Volumn 37, Issue 1, 1998, Pages 81-94

  Mao, Bing ^a   Hingerty, Brian E ^b   Broyde, Suse ^c   Patel, Dinshaw J ^a  

^a MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c NEW YORK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 FLUORENYLAMINE; DOUBLE STRANDED DNA;

ARTICLE; BASE PAIRING; DNA ADDUCT; DNA DETERMINATION; DNA STRUCTURE; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

CARBON; CARCINOGENS; DEOXYCYTIDINE; DEOXYGUANOSINE; DNA ADDUCTS; FLUORENES; INTERCALATING AGENTS; MAGNETIC RESONANCE SPECTROSCOPY; MATHEMATICAL COMPUTING; MODELS, MOLECULAR; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HETERODUPLEXES; PHOSPHORUS; PROTONS; SOLUTIONS;

EID: 0032488634     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi972257o     Document Type: Article

References (53)

1. Heflich, R. H., and Neft, R. E. (1994) Mutat. Res.: Rev. Genet. Toxicol. 318, 73-174.
2. Bichara, M., and Fuchs, R. P. P. (1985) J. Mol. Biol. 183, 341-351.
3. Gupta, P. K., Lee, M. S., and King, C. M. (1988) Carcinogenesis 9, 1337-1345.
4. Carothers, A. M., Urlaub, G., Mucha, J., Yuan, W., Chasin, L. A., and Grunberger, D. (1993) Carcinogenesis 14, 2181-2184 .
5. Melchoir, W. B. Jr., Marques, M. M., and Beland, F. A. (1994) Carcinogenesis 15, 889-899.
6. Tebbs, R. S., and Romano, L. J. (1994) Biochemistry 33, 8998-9006.
7. Ross, J., Doisy, R., and Tang, M. S. (1988) Mutat. Res. 201, 203-212.
8. Shibutani, S., and Grollman, A. P. (1993) J. Biol. Chem. 268, 11703-11710.
9. Hoffmann, G. R., and Fuchs, R. P. P. (1997) Chem. Res. Toxicol. 10, 347-359.
10. Norman, D., Abuaf, P., Hingerty, B. E., Live, D., Grunberger, D., Broyde, S., and Patel, D. J. (1989) Biochemistry 28, 7462-7476.
11. Abuaf, P., Hingerty, B. E., Broyde, S., and Grunberger, D. (1995) Chem. Res. Toxicol. 8, 369-378.
12. Mao, B., Cosman, M., Hingerty, B. E., Broyde, S., and Patel, D. J. (1995) Biochemistry 34, 6226-6238.
13. Mao, B., M., Hingerty, B. E., Broyde, S., and Patel, D. J. (1995) Biochemistry 34, 16641-16653.
14. Eckel, L. M., and Krugh, T. R. (1994) Nat. Struct. Biol. 1, 89-94.
15. Eckel, L. M., and Krugh, T. R. (1994) Biochemistry 33, 13611-13624.
16. Cho, B. P. Beland, F. A., and Marques, M. M. (1994) Biochemistry 33, 1373-1384.
17. Zhou, L., Rajabzadeh, M., Traficante, D. D., and Cho, B. P. (1997) J. Am. Chem. Soc. 119, 5384-5389.
18. Mao, B., M., Hingerty, B. E., Broyde, S., and Patel, D. J. (1998) Biochemistry 37, 95-106.
19. Marion, D., Ikura, M., Tschudin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
20. Patel, D. J., Kozlowski, S. A., Nordheim, A., and Rich, A. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 1413-1417.
21. van der Yen, F. J., and Hilbers, C. W. (1988) Eur. J. Biochem. 178, 1-38.
22. Hingerty, B. E., Figueroa, S., Hayden, T., and Broyde, S. (1989) Biopolymers 28, 1195-1222.
23. Taylor, E. R., and Olson, W. K. (1983) Biopolymers 22, 2667-2702.
24. Hingerty, B. E., and Broyde, S. (1982) Biochemistry 21, 3243-3252.
25. Broyde, S., and Hingerty, B. E. (1983) Biopolymers 22, 2423-2441.
26. Schlick, T., Hingerty, B. E., Peskin, C. S., Overton, M. L., and Broyde, S. (1990) in Theoretical Chemistry and Molecular Biophysics (Beveridge, D., and Lavery, R., Eds.) pp 39-58, Academic Press, New York.
27. Cosman, M., de los Santos, C., Fiala, R., Hingerty, B. E., Ibanez, V., Luna, E., Harvey, R., Geacintov, N. E., Broyde, S., and Patel, D. J. (1993) Biochemistry 32, 4145-4155.
28. Mao, B., Vyas, R. R., Hingerty, B. E., Broyde, S., Basu, A. K., and Patel, D. J. (1996) Biochemistry, 35, 12659-12670.
29. Patel, D. J., Shapiro, L., and Hare, D. (1987) Annu. Rev. Biophys. Chem. 16, 423-454.
30. Cosman, M., Hingerty, B. E., Geacintov, N. E., Broyde, S., and Patel, D. J. (1995) Biochemistry, 34, 15334-15350.
31. Kettani, A., Kumar, R. A., and Patel, D. J. (1995) J. Mol. Biol. 254, 638-656.
32. Wang, Y., and Patel, D. J. (1995) J. Mol. Biol. 251,76-94.
33. Ghose, R., Marino, J. P., Wiberg, K. B., and Prestegard, J. H. (1994) J. Am. Chem. Soc. 116, 8827-8828.
34. Greene, K. L., Wang, Y., and Live, D. (1995) J. Biomol. NMR 5, 333-338.
35. Arnott, S., Bond, P. J., Selsing, E., and Smith, P. J. (1976) Nucleic Acids Res. 2, 2459-2470.
36. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S. H., Srinivasan, A. R., and Schneider, B. (1992) Biophys. J. 63, 751-759.
37. Ippel, J. H., Lanzotti, V., Galeone, A., Mayol, L., Van den Boogaart, J. E., Pikkemaat, J. A., and Altona, C. (1995) Biopolymers 36, 681-694.
38. O'Handley, F. F., Sanford, D. G., Xu, R., Lester, C. C., Hingerty, B. E., Broyde, S., and Krugh, T. R. (1993) Biochemistry 32, 2481-2497.
39. Milhé, C., Fuchs, R. P. P., and Lefevre, J.-F. (1996) Eur. J. Biochem. 235, 120-127.
40. Fuchs, R. P. P., Schwartz, N., and Daune, M. P. (1981) Nature 294, 657-659.
41. Fuchs, R. P. P. (1983) J. Mol. Biol. 177, 173-180.
42. Koffel-Schwartz, N., Verdier, J. M., Bichara, M., Freund, A. M., Daune, M. P., and Fuchs, R. P. P. (1984) J. Mol. Biol. 177, 33-51.
43. Burnouf, D., Koehl, P., and Fuchs, R. P. P. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 4147-4151.
44. Grunberger, D., Nelson, J. H., Cantor, C. R., and Weinstein, I. B. (1970) Proc. Natl. Acad. Sci. U.S.A. 66, 488-494.
45. Fuchs, R. P. P., and Daune, M. (1971) FEBS Lett. 34, 295-298.
46. Basu, A. K., and Essigmann, J. M. (1988) Chem. Res. Toxicol. 1, 1-18.
47. Gupta, P. K., Johnson, D. L., Reid, T. M., Lee, M.-S., Romano, L. J., and King, C. M. (1989) J. Biol. Chem. 264, 20120-20130.
48. Mao, B., Gu, Z., Gorin, A., Hingerty, B. E., Broyde, S., and Patel, D. J. (1998) Biochemistry (in press).
49. Lipkowitz, K. B., Chevalier, T., Widdifield, M., and Beland, F. A. (1982) Chem.-Biol. Interact. 40, 57-76.
50. Shapiro, R., Sidawi, D., Miao, Y. S., Hingerty, B. E., Schmidt, K. E., Moskowitz, J., and Broyde, S. (1994) Chem. Res. Toxicol. 7, 239-253.
51. Beland, F. A., and Kadlubar, F. F. (1990) in Handbook of Experimental Pharmacology. Vol. 94/I: Chemical Carcinogenesis and Mutagenesis (Cooper, C. S., and Grover, P. L., Eds.) pp 267-325, Springer-Verlag, Heidelberg.
52. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
53. Altona, C., and Sundaralingam, M. (1972) J. Am. Chem. Soc. 94, 8205-8212.